mRNA_P-littoralis_Contig94.25.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig94.25.1 vs. uniprot
Match: D7FNH1_ECTSI (U3 small nucleolar RNA-associated protein 11 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNH1_ECTSI) HSP 1 Score: 444 bits (1143), Expect = 1.540e-152 Identity = 232/248 (93.55%), Postives = 243/248 (97.98%), Query Frame = 3
Query: 117 MSSLRNAVKRVEHKERAQPASRKKLGLLEKHKDYVLRARNYGKKRDRMQALKLKAAMKNPDEFYFAMHRKKTKGGVHVLDGAESLPHDVVQLLKTQDLGYVSTLRSADERKAGKLRESLHMLEAGPRNKHTIFFDSEKEAKDFDVAKHFDTVPELADRAFNRPRRETLETAQVTGATNRRQLKRVLKKRDASYGELVQRLERADKMKKAEVHLEAQRTVMNSKGTKRKVQEAKDGQPAVYRWKQERSR 860
MSSLRNAVKRVEHKERAQPASR+KLGLLEKHKDYVLRARNYGKKRDRMQALKLKAAMKNPDEFYFAMHRKKT+GGVHVLDGAE+LPHDVVQLLKTQDLGYVST RSADERKA KLRESLHMLEAGPRNKHTIFFDSEKEAK+FDVAKHFDTVPELADRAFNRPR++TLE AQVTGATNRRQLK+VLKKRDASY EL+QRLERA+KMKKAEVHLEAQR VMNSKGTKRKVQEAKDG+PAVYRWK+ERSR
Sbjct: 1 MSSLRNAVKRVEHKERAQPASRRKLGLLEKHKDYVLRARNYGKKRDRMQALKLKAAMKNPDEFYFAMHRKKTEGGVHVLDGAETLPHDVVQLLKTQDLGYVSTHRSADERKAAKLRESLHMLEAGPRNKHTIFFDSEKEAKEFDVAKHFDTVPELADRAFNRPRKDTLEKAQVTGATNRRQLKKVLKKRDASYSELMQRLERAEKMKKAEVHLEAQRKVMNSKGTKRKVQEAKDGRPAVYRWKKERSR 248
BLAST of mRNA_P-littoralis_Contig94.25.1 vs. uniprot
Match: A0A836CK24_9STRA (U3 small nucleolar RNA-associated protein 11 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK24_9STRA) HSP 1 Score: 280 bits (716), Expect = 4.480e-88 Identity = 143/248 (57.66%), Postives = 188/248 (75.81%), Query Frame = 3
Query: 117 MSSLRNAVKRVEHKERAQPASRKKLGLLEKHKDYVLRARNYGKKRDRMQALKLKAAMKNPDEFYFAMHRKKTKGGVHVLDGAESLPHDVVQLLKTQDLGYVSTLRSADERKAGKLRESLHMLEAGPRNKHTIFFDSEKEAKDFDVAKHFDTVPELADRAFNRPRRETLETAQVTGATNRRQLKRVLKKRDASYGELVQRLERADKMKKAEVHLEAQRTVMNSKGTKRKVQEAKDGQPAVYRWKQERSR 860
MSSLRNAVKR HKERAQPASR K GLLEKH DYVLRAR+Y KRDR+ AL+LKA+++NPDEFYF MH+ KTK GVH ++G+ SL H+ +LKTQD+ Y+ R+ D +KA +L+ LHML+A P+N HT+F ++++ + FD A++FDT PELA R FNRPR TLE+ QV GA +R LK+ LK+RDA+Y E+ R ERA KM +A HL AQR +M ++GT KV+ A+ GQP VY+WK++R++
Sbjct: 1 MSSLRNAVKRKTHKERAQPASRSKFGLLEKHSDYVLRARDYNAKRDRLNALRLKASLRNPDEFYFGMHKAKTKEGVHQVEGSSSLDHETAHMLKTQDMAYIHMKRAVDIKKAERLKAGLHMLDAPPQNTHTVFVKNKRQRRAFDAAEYFDTAPELAGRTFNRPRMATLESKQVLGAESRADLKKALKQRDAAYQEVEAREERARKMTRAAAHLAAQRALMTARGTVTKVKGAEKGQPPVYKWKRQRAK 248
BLAST of mRNA_P-littoralis_Contig94.25.1 vs. uniprot
Match: A0A8K1CCZ2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CCZ2_PYTOL) HSP 1 Score: 248 bits (632), Expect = 1.630e-75 Identity = 135/248 (54.44%), Postives = 178/248 (71.77%), Query Frame = 3
Query: 123 SLRNAVKRVEHKERAQPASRKKLGLLEKHKDYVLRARNYGKKRDRMQALKLKAAMKNPDEFYFAMHRKKTKGGVHVLDG--AESLPHDVVQLLKTQDLGYVSTLRSADERKAGKLRESLHMLEAGPRNKHTIFFDSEKEAKDFDVAKHFDTVPELADRAFNRPRRETLETAQVTGATNRRQLKRVLKKRDASYGELVQRLERADKMKKAEVHLEAQRTVMNSKGTKRKVQEAKDGQPAVYRWKQERSR 860
SLRN VKR EHKER Q RKKLGLLEKHKDYVLRAR+Y KK+DR++ +KLKAA +NPDEFYF M+ +T+ GVHV + +E L + +++LKTQDL Y+ R+ D RKA KL + LH ++A NKHT+F DS ++ FDVA HFDT PELADRAFNR R+ETL+T + T+++QL+ + K+RDA Y EL RL RA K+++ L+ +R V +KG KRKVQ+ +P VY+WK+ER +
Sbjct: 2 SLRNVVKRREHKERGQLQERKKLGLLEKHKDYVLRARDYNKKQDRLRTMKLKAAFRNPDEFYFKMNTTRTEDGVHVSENNHSEKLSAEALKVLKTQDLAYLHMKRAVDLRKAEKLTQGLHFIDAPKNNKHTVFVDSSEDLNTFDVATHFDTAPELADRAFNRLRKETLKTTTIQATTDKKQLRALTKERDAVYRELNDRLIRATKIQQMSDRLDLERKVQ-AKGKKRKVQDGDSSRPPVYKWKKERQK 248
BLAST of mRNA_P-littoralis_Contig94.25.1 vs. uniprot
Match: K3WAT9_GLOUD (U3 small nucleolar RNA-associated protein 11 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WAT9_GLOUD) HSP 1 Score: 243 bits (619), Expect = 1.500e-73 Identity = 135/251 (53.78%), Postives = 181/251 (72.11%), Query Frame = 3
Query: 117 MSSLRNAVKRVEHKERAQPASRKKLGLLEKHKDYVLRARNYGKKRDRMQALKLKAAMKNPDEFYFAMHRKKTKGGVHVL--DGAESLPHDVVQLLKTQDLGYVSTLRSADERKAGKLRESLHMLEA-GPRNKHTIFFDSEKEAKDFDVAKHFDTVPELADRAFNRPRRETLETAQVTGATNRRQLKRVLKKRDASYGELVQRLERADKMKKAEVHLEAQRTVMNSKGTKRKVQEAKDGQPAVYRWKQERSR 860
MSSLRN VKR EHKER Q RKKLGLLEKHKDYV RAR+Y KK+D ++AL +KAA +NPDEFYF M+ +T+ GVHV + + L + +++LKTQDL Y+ R+ D RKA KL E LH ++A G NKH +F DS+ E + FDVAKHFDTVPE+ADRAFNR R++TL+T + +++ LK++ +RDA Y EL RL+RA + + L+ +R V +KG K K+++A+DGQPAVYRWK++R +
Sbjct: 1 MSSLRNVVKRREHKERGQLRERKKLGLLEKHKDYVKRARDYNKKQDHLKALAVKAAFRNPDEFYFRMNSTRTEDGVHVSTHNHHKQLSAEALKVLKTQDLAYLHMKRAVDLRKAEKLNEGLHFIDAAGKDNKHVVFVDSKDEVESFDVAKHFDTVPEIADRAFNRLRKDTLKTVSLPAVQDKKTLKKLGIERDAVYRELNDRLQRASTIDRMRAKLDLERKVQ-AKGKKMKIKDAEDGQPAVYRWKKQRQK 250
BLAST of mRNA_P-littoralis_Contig94.25.1 vs. uniprot
Match: A0A5D6XJY8_9STRA (U3 small nucleolar RNA-associated protein 11 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XJY8_9STRA) HSP 1 Score: 239 bits (610), Expect = 3.290e-72 Identity = 129/248 (52.02%), Postives = 174/248 (70.16%), Query Frame = 3
Query: 123 SLRNAVKRVEHKERAQPASRKKLGLLEKHKDYVLRARNYGKKRDRMQALKLKAAMKNPDEFYFAMHRKKTKGGVHVLDG----AESLPHDVVQLLKTQDLGYVSTLRSADERKAGKLRESLHMLEAGPRNKHTIFFDSEKEAKDFDVAKHFDTVPELADRAFNRPRRETLETAQVTGATNRRQLKRVLKKRDASYGELVQRLERADKMKKAEVHLEAQRTVMNSKGTKRKVQEAKDGQPAVYRWKQER 854
SLRN VKR EHKER QP RKKLGLLEKHKDYV RAR+Y K+DR++ ++LKAA +NPDEFYF M+ +T+GGVHV D ++L D +++LKTQD+ Y+ R+ D RKA KL LH ++A NKH +F DSE + FDVA HFDT PELADRAFNR R + L+T + ++ +++K+ ++RD Y EL RLERA + + L+ +R V +KG K K+++A++GQPAVYRWK++R
Sbjct: 2 SLRNVVKRREHKERGQPQERKKLGLLEKHKDYVKRARDYNSKQDRLRTMQLKAAFRNPDEFYFRMNATRTEGGVHVSDNNRLDGKALTADALKVLKTQDVAYLHLKRAVDMRKAEKLNAGLHFIDAPTANKHVVFVDSEAQLAKFDVAAHFDTAPELADRAFNRVRMDALKTLALPAVSSAKEIKKRNRERDGVYRELSDRLERAATLDRMRAKLDLERKVQ-AKGKKMKIKDAENGQPAVYRWKKQR 248
BLAST of mRNA_P-littoralis_Contig94.25.1 vs. uniprot
Match: A0A4D9DA46_9STRA (U3 small nucleolar RNA-associated protein 11 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DA46_9STRA) HSP 1 Score: 236 bits (602), Expect = 5.260e-71 Identity = 135/247 (54.66%), Postives = 176/247 (71.26%), Query Frame = 3
Query: 120 SSLRNAVKRVEHKERAQPASRKKLGLLEKHKDYVLRARNYGKKRDRMQALKLKAAMKNPDEFYFAMHRKKTKGGVHVLDGAE-SLPHDVVQLLKTQDLGYVSTLRSADERKAGKLRESLHMLEAGPRNKHTIFFDSEKEAKDFDVAKHFDTVPELADRAFNRPRRETLET-AQVTGATNRRQLKRVLKKRDASYGELVQRLERADKMKKAEVHLEAQRTVMNSKGTKRKVQEAKDGQPAVYRWKQER 854
+SLRNA+ R +KER+QPA+RKK GLLEKHKDYV RA +Y +K + +L+ KAA +NPDEFYFAM + +TK GVH + AE SLPHD + LLKTQD+ YV+ R+ D +KA KL+ LH L NKHT+F D+E E + FD AKHF T P L RAFNRP+ ETLET V G N +LK+V K R+ +Y EL +RL+R+ K+ H++ ++ VM KG KRKVQEA+DG+PAV++WK+ER
Sbjct: 4 ASLRNAIPRKTNKERSQPAARKKFGLLEKHKDYVQRANDYKRKSKALASLREKAAFRNPDEFYFAMTKGQTKEGVHRVRPAEASLPHDHIALLKTQDMRYVTMKRALDVKKAEKLQAGLHFLTEEAANKHTVFVDTEAEVETFDPAKHFGTDPALVTRAFNRPKLETLETPGAVLGVANVGELKKVRKAREKAYTELGERLKRSLSFKEVLEHMQVEKNVMG-KGRKRKVQEAEDGKPAVFKWKRER 249
BLAST of mRNA_P-littoralis_Contig94.25.1 vs. uniprot
Match: A0A0P1B0R4_PLAHL (U3 small nucleolar RNA-associated protein 11 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B0R4_PLAHL) HSP 1 Score: 230 bits (586), Expect = 1.220e-68 Identity = 131/251 (52.19%), Postives = 177/251 (70.52%), Query Frame = 3
Query: 117 MSSLRNAVKRVEHKERAQPASRKKLGLLEKHKDYVLRARNYGKKRDRMQALKLKAAMKNPDEFYFAMHRKKTKGGVHVL--DGAESLPHDVVQLLKTQDLGYVSTLRSADERKAGKLRESLHMLEAGPRNKHTIFFDSEKEAKDFDVAKHFDTVPELADRAFNRPRRETLETAQVTG-ATNRRQLKRVLKKRDASYGELVQRLERADKMKKAEVHLEAQRTVMNSKGTKRKVQEAKDGQPAVYRWKQERSR 860
MSSLRN VKR EHKER Q R+KLGLLEKHKDYV RA++Y K+ R++ L+LKAA++NPDEFY MH KT+GGVH+ + +SL + ++ LKTQDL Y+ R+ D RKA +L LH ++A NKHT+F D +++ ++FDVA++FDTVPELADRAFNR RR LE ++ A + +Q ++ +RDA Y EL RL RA K+ + L+ +R V +KG KRKV+ A++G PAVYRWKQ+R +
Sbjct: 1 MSSLRNVVKRREHKERGQLRDRRKLGLLEKHKDYVKRAQDYNSKQKRLKMLQLKAALRNPDEFYHRMHNNKTEGGVHISTHNHLKSLSTEALRTLKTQDLAYLHLKRAVDLRKAERLNRGLHFVDAPKDNKHTVFVDDKEQVENFDVAQYFDTVPELADRAFNRIRRRDLEMVELPDMAASPKQKYKMQVERDALYRELRDRLTRAKKIGQMSAKLDLERKVQ-AKGRKRKVKAAENGMPAVYRWKQQRQK 250
BLAST of mRNA_P-littoralis_Contig94.25.1 vs. uniprot
Match: D0NVW8_PHYIT (U3 small nucleolar RNA-associated protein 11 n=14 Tax=Phytophthora TaxID=4783 RepID=D0NVW8_PHYIT) HSP 1 Score: 229 bits (584), Expect = 2.410e-68 Identity = 130/251 (51.79%), Postives = 174/251 (69.32%), Query Frame = 3
Query: 117 MSSLRNAVKRVEHKERAQPASRKKLGLLEKHKDYVLRARNYGKKRDRMQALKLKAAMKNPDEFYFAMHRKKTKGGVHVL--DGAESLPHDVVQLLKTQDLGYVSTLRSADERKAGKLRESLHMLEAGPRNKHTIFFDSEKEAKDFDVAKHFDTVPELADRAFNRPRRETLETAQVTG-ATNRRQLKRVLKKRDASYGELVQRLERADKMKKAEVHLEAQRTVMNSKGTKRKVQEAKDGQPAVYRWKQERSR 860
MSSLRN VKR EHKER Q R+KLGLLEKHKDYV RAR+Y K+ R++ L+LKAA++NPDEFY M KT+GGVHV + +S+ + ++ LKTQDL Y+ R+ D RKA +L LH ++A N HT+F D E++ FDVA+HFDT PEL DRAFNR R+ LETA++ A N +Q ++ ++DA Y EL RL RA+K+ + L+ +R V +KG K+KV+ A++G PAVYRWKQ+R +
Sbjct: 1 MSSLRNVVKRREHKERGQLRERRKLGLLEKHKDYVKRARDYNSKQKRLKTLQLKAALRNPDEFYHRMRGTKTEGGVHVSTHNHIKSVETEALRTLKTQDLAYLHMKRAVDLRKAERLNRGLHFVDAPKNNNHTVFVDDEEQVDSFDVAEHFDTAPELVDRAFNRIRKRDLETAELPDLAANPKQKYKMQVEKDAMYRELRDRLARANKLGQMSAKLDLERKVQ-AKGRKKKVKAAENGMPAVYRWKQQRQK 250
BLAST of mRNA_P-littoralis_Contig94.25.1 vs. uniprot
Match: A0A7S2W8G3_9STRA (U3 small nucleolar RNA-associated protein 11 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W8G3_9STRA) HSP 1 Score: 229 bits (583), Expect = 4.380e-68 Identity = 126/259 (48.65%), Postives = 180/259 (69.50%), Query Frame = 3
Query: 117 MSSLRNAVKRVEHKERAQPASRKKLGLLEKHKDYVLRARNYGKKRDRMQALKLKAAMKNPDEFYFAMHRKKTKGGVHVL---DGAESLPHDVVQLLKTQDLGYVSTLRSADERKAGKLRESLHMLEAGPRNKHTIFFDSEKEAKDFDVAKHFDTVPELADRAFNRPRRETLE--------TAQVTGATNRRQLKRVLKKRDASYGELVQRLERADKMKKAEVHLEAQRTVMNSKGTKRKVQEAKDGQPAVYRWKQERSR 860
M+SLRNA+ R H+ER+Q ASR LGLLEK KDYV RAR++ +K +++ L+ KA +NPDEFYF M +KTK GVHV DGA+ L HD + L+K+QDLGY+S ++ D+RK+ +L+ LHML P N+HT+F D K+ + FD A+HFDT+PELA RAFNRPRR+ E + V +T+ +Q K+++K +D +Y +L +RLER++K++K E ++ VM KG KRKV+ + G P VY+WK++R+R
Sbjct: 1 MASLRNALPRRTHRERSQVASRAHLGLLEKKKDYVERARDFQRKTGKIKNLRKKARERNPDEFYFGMVNQKTKDGVHVAERNDGADKLSHDDILLMKSQDLGYLSMKKAVDDRKSERLQSGLHMLLDKPLNQHTVFLDKSKDVETFDAAEHFDTMPELAGRAFNRPRRKAFEADKEGSIASTPVMTSTSSKQYKKIMKSKDKAYEDLAERLERSEKLRKLIQRKEVEKKVMG-KGRKRKVEGSSSGAPPVYKWKRKRAR 258
BLAST of mRNA_P-littoralis_Contig94.25.1 vs. uniprot
Match: A0A3R7K0P1_9STRA (U3 small nucleolar RNA-associated protein 11 n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7K0P1_9STRA) HSP 1 Score: 226 bits (577), Expect = 5.110e-67 Identity = 129/251 (51.39%), Postives = 173/251 (68.92%), Query Frame = 3
Query: 117 MSSLRNAVKRVEHKERAQPASRKKLGLLEKHKDYVLRARNYGKKRDRMQALKLKAAMKNPDEFYFAMHRKKTKGGVHVL--DGAESLPHDVVQLLKTQDLGYVSTLRSADERKAGKLRESLHMLEAGPRNKHTIFFDSEKEAKDFDVAKHFDTVPELADRAFNRPRRETLETAQVTG-ATNRRQLKRVLKKRDASYGELVQRLERADKMKKAEVHLEAQRTVMNSKGTKRKVQEAKDGQPAVYRWKQERSR 860
MSSLRN VKR EHKER Q R+KLGLLEKHKDYV RA++Y +K+ ++ L+LKA+M+NPDEFY+ M KT+GGVH+ + A+ L + ++ LKTQDL Y+ R+ D RKA KL LH ++ NKHT+F D + + FDVA+HFDT PELADRAFNR R+ LET ++ A + +Q ++ ++DA Y EL RLERA K+ + L+ +R V +KG K KV+ A+DG PAVYRWKQ+R +
Sbjct: 22 MSSLRNVVKRREHKERGQLRERRKLGLLEKHKDYVKRAKDYNQKQKHLRNLQLKASMRNPDEFYYKMIHGKTEGGVHISTHNHAKQLNAEALRTLKTQDLAYLHMKRAVDLRKAEKLNRGLHFIDTPKNNKHTVFVDEDDDVNKFDVAEHFDTAPELADRAFNRLRKADLETMELPDLAADPKQKYKMQVEKDAMYRELRDRLERAKKIGRMSAKLDLERKVQ-AKGKKMKVKGAEDGMPAVYRWKQQRQK 271 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig94.25.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig94.25.1 >prot_P-littoralis_Contig94.25.1 ID=prot_P-littoralis_Contig94.25.1|Name=mRNA_P-littoralis_Contig94.25.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=249bp MSSLRNAVKRVEHKERAQPASRKKLGLLEKHKDYVLRARNYGKKRDRMQAback to top mRNA from alignment at P-littoralis_Contig94:109545..117618- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig94.25.1 ID=mRNA_P-littoralis_Contig94.25.1|Name=mRNA_P-littoralis_Contig94.25.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=8074bp|location=Sequence derived from alignment at P-littoralis_Contig94:109545..117618- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig94:109545..117618- >mRNA_P-littoralis_Contig94.25.1 ID=mRNA_P-littoralis_Contig94.25.1|Name=mRNA_P-littoralis_Contig94.25.1|organism=Pylaiella littoralis U1_48|type=CDS|length=747bp|location=Sequence derived from alignment at P-littoralis_Contig94:109545..117618- (Pylaiella littoralis U1_48)back to top |