mRNA_P-littoralis_Contig924.9.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig924.9.2
Unique NamemRNA_P-littoralis_Contig924.9.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig924.9.2 vs. uniprot
Match: D7FSH3_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSH3_ECTSI)

HSP 1 Score: 244 bits (623), Expect = 1.510e-72
Identity = 153/261 (58.62%), Postives = 176/261 (67.43%), Query Frame = 1 
Query:    1 MKERLASLTEAPLQDAEVIMAKHGLYSICFQELILFADAINPGLSLALEDLQGAHHDLLQDVPGIVQRTIDEYQQ------------EISGLRANKEREAKEAEELVEAAHALERETIAHHQELRQLHQRLNALEEENASLKNNIPTGHASLLTRPRTPLHNIATNGFTGATDASGRKPPLAVADLSTTLC---DGRGGXXXXXNRGMTPKPSSESV-TTRVAWGDGGSGVTADGQQAVAVEAAAAVTIDDHRELSLKQLH 735
            MKERLASLTE PLQDAEV+MAKHGLYSICFQELI    A NP LS ALE L+ AH  LLQDVPGIVQRT+DE QQ            EIS LR +KE EA+EA ELV+AA ALERET+AHHQELRQLH+RLN LE+ENA+LK     GH+SL +RPRTPLH    +GFT +T +S R+   A+   S T     +G GG       G+TP+PS E V T    W  GG G TADG+   A   A A+ I+  RELSLKQLH
Sbjct:  105 MKERLASLTEGPLQDAEVVMAKHGLYSICFQELISITCATNPDLSCALESLRDAHDGLLQDVPGIVQRTLDENQQGVSSTCVTRSLQEISSLRDSKESEAREAGELVQAAQALERETVAHHQELRQLHRRLNELEDENAALKTTHYAGHSSLQSRPRTPLHKPIPDGFTCSTTSSAREKHHALPSASITRYHGGEGEGGGITP-EEGITPEPSLEHVRTVWFRWDQGGDGETADGK--AAPTPAVAMAINGTRELSLKQLH 362
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BLAST of mRNA_P-littoralis_Contig924.9.2 vs. uniprot
Match: A0A6H5L113_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L113_9PHAE)

HSP 1 Score: 184 bits (468), Expect = 2.570e-50
Identity = 127/260 (48.85%), Postives = 148/260 (56.92%), Query Frame = 1 
Query:    1 MKERLASLTEAPLQDAEVIMAKHGLYSICFQELILFADAINPGLSLALEDLQGAHHDLLQDVPGIVQRTIDEYQQ------------EISGLRANKEREAKEAEELVEAAHALERETIAHHQELRQLHQRLNALEEENASLKNNIPTGHASLLTRPRTPLHNIATNGFTGATDASGRKPPLAVADLSTTLCDGR--GGXXXXXNRGMTPKPSSE-SVTTRVAWGDGGSGVTADGQQAVAVEAAAAVTIDDHRELSLKQLH 735
            MKERLASLTE PLQDAEV+MAK+GLYSICFQELI      NP LS AL  L+ AH  LLQDVPGIVQRT+DE QQ            EIS LR +KEREA+EAEELV+  + +              H+     E+ENA+LK     GH+SL +RPRTPLH    +GFT +T         A+   STT   G   GG       G+TP P  E   T    W  GG G   DG+ A  +  A AV I+  RELSLKQLH
Sbjct:  106 MKERLASLTEGPLQDAEVVMAKYGLYSICFQELISITRGTNPDLSCALGSLRDAHDSLLQDVPGIVQRTLDENQQGVSSTCVTRSLQEISSLRDSKEREAREAEELVQRFNGV-------------YHKLWLPPEDENAALKTTHDAGHSSLQSRPRTPLHKPIPDGFTCSTTXXXXXKHHALPSASTTRYQGGEGGGRGITPEDGVTPDPFLEHGRTVGFRWDQGGDGEATDGKAASTL--AEAVAINGTRELSLKQLH 350
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BLAST of mRNA_P-littoralis_Contig924.9.2 vs. uniprot
Match: A0A7S2FJM3_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FJM3_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 1.640e-14
Identity = 45/124 (36.29%), Postives = 73/124 (58.87%), Query Frame = 1 
Query:    1 MKERLASLTEAPLQDAEVIMAKHGLYSICFQELILFADAINPGLSLALEDLQGAHHDLLQDVPGIVQRTIDEYQQEISGLRANKEREAKEAEELVEAAHALERETIAHHQELRQLHQRLNALEE 372
            + +RL S+ ++  +  E+IMAKHGLY +CFQE+I FA + NP LS A+  + G H +L + +  +V R++ + ++    L  + E+  +E  EL+EAA  LE+E   H     QL   +  L+E
Sbjct:  262 LNDRLESIEDSAQRQMEIIMAKHGLYDVCFQEIISFAHSANPQLSAAVRQISGVHAELFESMEAVVSRSVTDRER----LHVDLEKSRQETTELLEAAETLEKEAEQHQVRTAQLEDEIKRLKE 381
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig924.9.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FSH3_ECTSI1.510e-7258.62EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5L113_9PHAE2.570e-5048.85EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
A0A7S2FJM3_9STRA1.640e-1436.29Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig924contigP-littoralis_Contig924:41205..44592 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FSH3
Model size759
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons6
Evalue2.47e-73
EggNOG OGs28P70@1|root,2QVTY@2759|Eukaryota
Cds size759
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig924.9.2prot_P-littoralis_Contig924.9.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig924 41205..44592 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791836.5973573-CDS-P-littoralis_Contig924:41204..415941680791836.5973573-CDS-P-littoralis_Contig924:41204..41594Pylaiella littoralis U1_48CDSP-littoralis_Contig924 41205..41594 -
1680791836.6101754-CDS-P-littoralis_Contig924:42132..422131680791836.6101754-CDS-P-littoralis_Contig924:42132..42213Pylaiella littoralis U1_48CDSP-littoralis_Contig924 42133..42213 -
1680791836.6200023-CDS-P-littoralis_Contig924:42469..425321680791836.6200023-CDS-P-littoralis_Contig924:42469..42532Pylaiella littoralis U1_48CDSP-littoralis_Contig924 42470..42532 -
1680791836.6329446-CDS-P-littoralis_Contig924:42956..430471680791836.6329446-CDS-P-littoralis_Contig924:42956..43047Pylaiella littoralis U1_48CDSP-littoralis_Contig924 42957..43047 -
1680791836.6475246-CDS-P-littoralis_Contig924:43653..437451680791836.6475246-CDS-P-littoralis_Contig924:43653..43745Pylaiella littoralis U1_48CDSP-littoralis_Contig924 43654..43745 -
1680791836.6596334-CDS-P-littoralis_Contig924:44550..445921680791836.6596334-CDS-P-littoralis_Contig924:44550..44592Pylaiella littoralis U1_48CDSP-littoralis_Contig924 44551..44592 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig924.9.2

>prot_P-littoralis_Contig924.9.2 ID=prot_P-littoralis_Contig924.9.2|Name=mRNA_P-littoralis_Contig924.9.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=253bp
MKERLASLTEAPLQDAEVIMAKHGLYSICFQELILFADAINPGLSLALED
LQGAHHDLLQDVPGIVQRTIDEYQQEISGLRANKEREAKEAEELVEAAHA
LERETIAHHQELRQLHQRLNALEEENASLKNNIPTGHASLLTRPRTPLHN
IATNGFTGATDASGRKPPLAVADLSTTLCDGRGGGGGGGNRGMTPKPSSE
SVTTRVAWGDGGSGVTADGQQAVAVEAAAAVTIDDHRELSLKQLHMDPGY
PQ*
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mRNA from alignment at P-littoralis_Contig924:41205..44592-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig924.9.2 ID=mRNA_P-littoralis_Contig924.9.2|Name=mRNA_P-littoralis_Contig924.9.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=3388bp|location=Sequence derived from alignment at P-littoralis_Contig924:41205..44592- (Pylaiella littoralis U1_48)
ATGAAGGAGCGGTTGGCCTCGCTGACAGAGGCCCCTCTGCAGGCAAGCAG
CTGACTACAAAAAAGGTGGTAGTTTAATCAGGAGAAGGTCGCAAGTTCTT
CCGATGTCCGATGTCCGATGTCCGATGTCCGATGTCTGATGTCCGATGTG
ACTGGCAGACCGCACCCGGTTTTTGTGTGTTAGTGACGAGTTTCACCTTC
TTTACCAGTGTATCTTGAAGCTTCCACACTGTGCCATCTTGCTACTCGTA
AATAGCATAAATCATTGCTCGGCCGTCTTTTTCTGACATCAACGGCCGTC
ACGAAGCGAGAGAGGCCGACGTCATCGTCTTCTCTCTGCGCGCGCTTGTC
GTGCCGTGTACTGTTCGTGCTGGGCCTCCTAGAGCTCGTCGGCCACGTCC
CCTCCCGCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
TCCCCGATGCCCCCTCCCTCTCTTGCTCGGCGGAGACACGCACCAGCGTT
GACTCGCAACCTGCGCGAGCAACCTGTGCGTCGGCAGGAAACGCTCGTCT
GCGGTGGCTGGGTAAACCGCATGTTGCGCTGCATCCGCTGCATGCACCGT
TTGACGCGTTCGACAACCTTGTAGCCGTGGAACTAAGTTTTGGTGAATGT
TCATGATTTTTTATCACCCCATCGAATCTGGTCGGTCAAAATTCGGCGCG
GTGCCCCGTCCACGCTTTGAAAGGGCGCGAGGGAATATGACTTCGCACCA
TGATTATGCTTGATGAGTGAGTGAGCACGTACACTCCGGCACTCCCTACC
TCTCGCGCGCCTCTCTCCCGGCCCCGCACTGCCATTTTTCGTCGAAGGAC
GCTGAGGTGATCATGGCGAAGCATGGTCTCTACAGCATCTGTTTCCAGGA
GCTGATTTTGTTCGCGGATGCGATAAATCCCGGCCTAAGGTAAGGCTTGA
GACTCCGCTTCGGCGGGCTTGTCTCTGGGGAGAATCACGTCCATACACCA
CTTTTTGACACGCAACATGAGTGACCAGTAGGCTAGCGTACTGCAGCGGC
CCTCGTTTGTCAAGGATACAGCAAATTGTAGATGTGTACATCAGCGTGCT
GCGGCCCCGCTTGCCAAGGATGCAGCACGTTGTAGATGGGTTTGGTGCGT
CCCATGTATTTCCTCGAACTGCCACAACTTGCGCGTCCGATACGACAACG
TGGAGAAAAAAGCTCCATCGTCAAGCGGCAAGGATGACCCAGCAACATAC
CAGAGGTGGAAAGTACAGCAAAGGTAGCAGCAGATGCCACTTTTATAACC
TTTGCCATACACGTACCTTGCGGACTTGAAATGTGCGCTGTGTACTTTTG
TGCGTTTAGAGCTCTGAGTACCGACATCGAAGCGCGAATTTTGCTTACTG
TTGTTCATGCCGCTTGTTCCTGCTTCTTGCGTCGGGTGGGCGGTAAGACA
CGCTGCCTTCTCCTGCTAAATACGCCAGAAATGCCCCCCCCCCCTCTTTC
TGCGTGCCAATCTGTTGGGTCGGATGTGCCCCTCGTTTACCGCAGTCTCG
CCTTGGAGGACCTTCAAGGCGCGCACCACGACCTTCTGCAAGATGTGCCC
GGAATAGTCCAGCGGACAATCGACGAATATCAACAGGTCGGGAAGCCCGG
CCGTAGCGCGCTCTTCTGGTTGTATTACCCCCTACGCTACAATCACGCGC
TTTCCTTTTTCGTTCCACGTACTATCCCCTCTCACAAGAGAGTGAAGAGT
CAGGCTTGGTATATTGCTGACAGAGCGATAACGTGGAGGGGCTCGTACAG
CTCTTGTACGATATGCGGCCAAGTACCAGCAGGTGCAACAAAGCTCAACG
TTGTTATAAAGGCCTGTAATCCAGGCTCGATTGTTTGAGGGCCGCTCTCT
TGTGAGAGCGGCCTGCCACAGTCTTGTGGCAGACGCACTGTTTCGGGCAT
GTTACATGCCCGCAAAGCCTGCTGCTGTTCTGATCACAAGCTACTGCTGT
TCTCACAACAGCAACTTCTTCGATTGGACATCGTGTGTACTGCTCGCTTG
TTTGTCACAGGAGATCTCCGGTCTGCGCGCCAACAAGGAACGCGAAGCGA
AGGAGGCCGAGGAACTCGTCGAGGTGAGCAGCGCATCAGGGGAACAGGGG
TTCCAAAATGTATATTTGTTGGTCACGAACAATGTTTCGTCGCTTTCTTT
TATTTTCGCCTGCCGATGTGTCATGAAATGGATACATTGTATCCGCAAAC
ACATACAGTACAAGTACACGGGAGTATTGCGGGGTGAAGGTCAGACCCTG
ACGACGATACACGTGCACTTTCACTCTGAATAAACCTAACCTTATTGTTC
GTCATGTCTCGTGGGGGGATGCAAGGCAGGCGGCACATGCACTCGAGAGA
GAGACAATCGCACACCACCAGGAACTGAGACAACTTCATCAACGACTGAA
CGCGCTAGAGGTGAGTCAAGCGAGACTATGATAGCCGAGCAGAGCAGGCA
GCAGTAGCGACGGGAAAAGTTAATACGGCGAGTTTCCTGGTACTATGCTC
ACGAGCGCCGGAATCACCTGTGTTGCGCGATATCTGTCTTCTTGGCCCCT
TGAGATTGTGGCACTCTAAATGTGTTCAGGGACCAACTATATGGAACTTT
GCAAAGGAGAGAGTAAATTGAGGAACGGGAATGTTCGAAGCTACGCCACG
TGTGAGCGAGCCTCCAATTATGACACTTGTTTGCGGGGTAAACAGGTTCC
CGGTGGTCGATCTGAAGGTCTCGAGGCGGGGCAGTGATGATGTAGCGTTC
CAAGTCCGGAACAGACCGGGAACACGTCGGGCTACATCATGGATCTGTAC
TGTATTTTATGTTGTGTATGAAAAGAGTTTATAGGCCGCCATACTAACGA
AGCTACAACGTTCTAGCCCTCTCCCCACAGCAGAGCTTCCCAGCCACTCA
CCCCCACACGCTATACTTCATATTATCCGCCCGTCTAAAATACGACAGGA
GGAAAACGCCTCTCTGAAAAATAATATCCCGACTGGGCATGCCTCGCTCC
TCACAAGGCCCCGAACGCCTTTGCACAACATCGCTACCAACGGGTTCACC
GGTGCCACTGACGCAAGCGGGAGGAAGCCGCCTCTCGCAGTTGCAGATCT
GTCAACGACTCTCTGCGACGGCCGCGGCGGCGGCGGCGGCGGGGGGAATC
GGGGGATGACACCCAAACCTTCCTCGGAAAGCGTAACAACTAGGGTTGCC
TGGGGCGACGGTGGAAGCGGCGTAACTGCGGATGGTCAGCAGGCGGTAGC
GGTGGAAGCGGCGGCGGCGGTGACGATCGATGACCACCGAGAACTCTCCC
TCAAACAGCTCCATATGGACCCAGGTTACCCTCAATAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig924:41205..44592-

>mRNA_P-littoralis_Contig924.9.2 ID=mRNA_P-littoralis_Contig924.9.2|Name=mRNA_P-littoralis_Contig924.9.2|organism=Pylaiella littoralis U1_48|type=CDS|length=759bp|location=Sequence derived from alignment at P-littoralis_Contig924:41205..44592- (Pylaiella littoralis U1_48)
ATGAAGGAGCGGTTGGCCTCGCTGACAGAGGCCCCTCTGCAGGACGCTGA
GGTGATCATGGCGAAGCATGGTCTCTACAGCATCTGTTTCCAGGAGCTGA
TTTTGTTCGCGGATGCGATAAATCCCGGCCTAAGTCTCGCCTTGGAGGAC
CTTCAAGGCGCGCACCACGACCTTCTGCAAGATGTGCCCGGAATAGTCCA
GCGGACAATCGACGAATATCAACAGGAGATCTCCGGTCTGCGCGCCAACA
AGGAACGCGAAGCGAAGGAGGCCGAGGAACTCGTCGAGGCGGCACATGCA
CTCGAGAGAGAGACAATCGCACACCACCAGGAACTGAGACAACTTCATCA
ACGACTGAACGCGCTAGAGGAGGAAAACGCCTCTCTGAAAAATAATATCC
CGACTGGGCATGCCTCGCTCCTCACAAGGCCCCGAACGCCTTTGCACAAC
ATCGCTACCAACGGGTTCACCGGTGCCACTGACGCAAGCGGGAGGAAGCC
GCCTCTCGCAGTTGCAGATCTGTCAACGACTCTCTGCGACGGCCGCGGCG
GCGGCGGCGGCGGGGGGAATCGGGGGATGACACCCAAACCTTCCTCGGAA
AGCGTAACAACTAGGGTTGCCTGGGGCGACGGTGGAAGCGGCGTAACTGC
GGATGGTCAGCAGGCGGTAGCGGTGGAAGCGGCGGCGGCGGTGACGATCG
ATGACCACCGAGAACTCTCCCTCAAACAGCTCCATATGGACCCAGGTTAC
CCTCAATAG
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