mRNA_P-littoralis_Contig912.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig912.1.1
Unique NamemRNA_P-littoralis_Contig912.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig912.1.1 vs. uniprot
Match: D7FHP4_ECTSI (AP-1 complex subunit gamma n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHP4_ECTSI)

HSP 1 Score: 108 bits (269), Expect = 6.770e-26
Identity = 56/58 (96.55%), Postives = 57/58 (98.28%), Query Frame = 1
Query:   10 MSIKLRELIRAVRACKTAAEERGVVAQECARIRTAFKEEDIEFRNRNVAKLLFIHMLG 183
            MSI+LRELIRAVRACKTAAEERGVVAQECARIRTAFKEED EFRNRNVAKLLFIHMLG
Sbjct:    1 MSIRLRELIRAVRACKTAAEERGVVAQECARIRTAFKEEDTEFRNRNVAKLLFIHMLG 58          
BLAST of mRNA_P-littoralis_Contig912.1.1 vs. uniprot
Match: A0A1Q9EJ89_SYMMI (AP-1 complex subunit gamma-1 n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A1Q9EJ89_SYMMI)

HSP 1 Score: 98.2 bits (243), Expect = 2.240e-22
Identity = 49/61 (80.33%), Postives = 58/61 (95.08%), Query Frame = 1
Query:    1 RNAMSIKLRELIRAVRACKTAAEERGVVAQECARIRTAFKEEDIEFRNRNVAKLLFIHMLG 183
            R+AMSIKLRELIR++RACKTAAEER V+A+ECA IRTAFKE+D +FR+RNVAKLLFIHM+G
Sbjct: 2398 RDAMSIKLRELIRSIRACKTAAEERAVIARECALIRTAFKEDDNQFRHRNVAKLLFIHMMG 2458          
BLAST of mRNA_P-littoralis_Contig912.1.1 vs. uniprot
Match: A0A482RW17_9ARCH (Adaptin_N domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RW17_9ARCH)

HSP 1 Score: 93.6 bits (231), Expect = 5.870e-22
Identity = 48/58 (82.76%), Postives = 53/58 (91.38%), Query Frame = 1
Query:   10 MSIKLRELIRAVRACKTAAEERGVVAQECARIRTAFKEEDIEFRNRNVAKLLFIHMLG 183
            MSIKLR+LIRAVRACKTAAEER V+++ECA IRTA KEED +FR RNVAKLLFIHMLG
Sbjct:    1 MSIKLRDLIRAVRACKTAAEERAVISKECALIRTAIKEEDEQFRQRNVAKLLFIHMLG 58          
BLAST of mRNA_P-littoralis_Contig912.1.1 vs. uniprot
Match: A0A812MR36_SYMPI (Ap1g1 protein n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812MR36_SYMPI)

HSP 1 Score: 95.1 bits (235), Expect = 2.410e-21
Identity = 47/58 (81.03%), Postives = 55/58 (94.83%), Query Frame = 1
Query:   10 MSIKLRELIRAVRACKTAAEERGVVAQECARIRTAFKEEDIEFRNRNVAKLLFIHMLG 183
            MSIKLRELIR++RACKTAAEER V+A+ECA IRTAFKE+D +FR+RNVAKLLFIHM+G
Sbjct:    1 MSIKLRELIRSIRACKTAAEERAVIARECALIRTAFKEDDNQFRHRNVAKLLFIHMMG 58          
BLAST of mRNA_P-littoralis_Contig912.1.1 vs. uniprot
Match: A0A813L6Y0_POLGL (AP-1 complex subunit gamma n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813L6Y0_POLGL)

HSP 1 Score: 95.1 bits (235), Expect = 2.670e-21
Identity = 47/58 (81.03%), Postives = 55/58 (94.83%), Query Frame = 1
Query:   10 MSIKLRELIRAVRACKTAAEERGVVAQECARIRTAFKEEDIEFRNRNVAKLLFIHMLG 183
            MSIKLRELIR++RACKTAAEER V+A+ECA IRTAFKE+D +FR+RNVAKLLFIHM+G
Sbjct:    1 MSIKLRELIRSIRACKTAAEERAVIARECALIRTAFKEDDNQFRHRNVAKLLFIHMMG 58          
BLAST of mRNA_P-littoralis_Contig912.1.1 vs. uniprot
Match: A0A0G4ELK5_VITBC (AP-1 complex subunit gamma n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4ELK5_VITBC)

HSP 1 Score: 94.7 bits (234), Expect = 3.650e-21
Identity = 48/58 (82.76%), Postives = 53/58 (91.38%), Query Frame = 1
Query:   10 MSIKLRELIRAVRACKTAAEERGVVAQECARIRTAFKEEDIEFRNRNVAKLLFIHMLG 183
            MSIKLRELIR +RACKTAAEER V+A+ECA IRTAFKEED  +R+RNVAKLLFIHMLG
Sbjct:    1 MSIKLRELIRNIRACKTAAEERAVIAKECAEIRTAFKEEDNHYRHRNVAKLLFIHMLG 58          
BLAST of mRNA_P-littoralis_Contig912.1.1 vs. uniprot
Match: A0A7S1F0P5_NOCSC (AP-1 complex subunit gamma n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1F0P5_NOCSC)

HSP 1 Score: 94.0 bits (232), Expect = 6.800e-21
Identity = 46/58 (79.31%), Postives = 55/58 (94.83%), Query Frame = 1
Query:   10 MSIKLRELIRAVRACKTAAEERGVVAQECARIRTAFKEEDIEFRNRNVAKLLFIHMLG 183
            MSIKLRELIR++R+CKTAAEER V+A+ECA IRTAFKE+D +FR+RNVAKLLFIHM+G
Sbjct:   20 MSIKLRELIRSIRSCKTAAEERSVIARECALIRTAFKEDDNQFRHRNVAKLLFIHMMG 77          
BLAST of mRNA_P-littoralis_Contig912.1.1 vs. uniprot
Match: A0A0G4HF14_9ALVE (Adaptin_N domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4HF14_9ALVE)

HSP 1 Score: 88.6 bits (218), Expect = 1.300e-20
Identity = 44/58 (75.86%), Postives = 51/58 (87.93%), Query Frame = 1
Query:   10 MSIKLRELIRAVRACKTAAEERGVVAQECARIRTAFKEEDIEFRNRNVAKLLFIHMLG 183
            MS KLR+L+RAVR CKTAAEERGV+A+ECA IRT FK+E   +R+RNVAKLLFIHMLG
Sbjct:    1 MSQKLRDLVRAVRGCKTAAEERGVIAKECAMIRTTFKDESDSYRHRNVAKLLFIHMLG 58          
BLAST of mRNA_P-littoralis_Contig912.1.1 vs. uniprot
Match: A0A662XRJ5_9STRA (Adaptin_N domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XRJ5_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 2.240e-20
Identity = 44/58 (75.86%), Postives = 53/58 (91.38%), Query Frame = 1
Query:   10 MSIKLRELIRAVRACKTAAEERGVVAQECARIRTAFKEEDIEFRNRNVAKLLFIHMLG 183
            MS KLR+LIR+VRACKTAAEER V+A+E A IRTAFK++D ++R+RNVAKLLFIHMLG
Sbjct:    1 MSQKLRDLIRSVRACKTAAEERAVIAKESALIRTAFKDQDKQYRHRNVAKLLFIHMLG 58          
BLAST of mRNA_P-littoralis_Contig912.1.1 vs. uniprot
Match: A0A836CEJ3_9STRA (AP-1 complex subunit gamma n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEJ3_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 2.360e-20
Identity = 48/58 (82.76%), Postives = 53/58 (91.38%), Query Frame = 1
Query:   10 MSIKLRELIRAVRACKTAAEERGVVAQECARIRTAFKEEDIEFRNRNVAKLLFIHMLG 183
            MSIKL+ELIRAVRACKTAA ER VV+QE A IRTAFKEE +E+RNRNVAKLLF+HMLG
Sbjct:    1 MSIKLKELIRAVRACKTAAAERSVVSQELALIRTAFKEEQLEYRNRNVAKLLFMHMLG 58          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig912.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FHP4_ECTSI6.770e-2696.55AP-1 complex subunit gamma n=2 Tax=Ectocarpus TaxI... [more]
A0A1Q9EJ89_SYMMI2.240e-2280.33AP-1 complex subunit gamma-1 n=2 Tax=Symbiodinium ... [more]
A0A482RW17_9ARCH5.870e-2282.76Adaptin_N domain-containing protein (Fragment) n=1... [more]
A0A812MR36_SYMPI2.410e-2181.03Ap1g1 protein n=1 Tax=Symbiodinium pilosum TaxID=2... [more]
A0A813L6Y0_POLGL2.670e-2181.03AP-1 complex subunit gamma n=2 Tax=Polarella glaci... [more]
A0A0G4ELK5_VITBC3.650e-2182.76AP-1 complex subunit gamma n=2 Tax=Vitrella brassi... [more]
A0A7S1F0P5_NOCSC6.800e-2179.31AP-1 complex subunit gamma n=1 Tax=Noctiluca scint... [more]
A0A0G4HF14_9ALVE1.300e-2075.86Adaptin_N domain-containing protein n=1 Tax=Chrome... [more]
A0A662XRJ5_9STRA2.240e-2075.86Adaptin_N domain-containing protein n=1 Tax=Nothop... [more]
A0A836CEJ3_9STRA2.360e-2082.76AP-1 complex subunit gamma n=1 Tax=Tribonema minus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig912contigP-littoralis_Contig912:2667..2861 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FHP4
PFAMsAdaptin_N,Alpha_adaptinC2
Model size195
Max annot lvl2759|Eukaryota
KEGG koko:K11279,ko:K12391
KEGG Pathwayko04142,map04142
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.33e-26
EggNOG OGsCOG4354@1|root,KOG1062@2759|Eukaryota
Descriptionintracellular protein transport
Cds size186
COG categoryG
BRITEko00000,ko00001,ko03036,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791823.5780132-CDS-P-littoralis_Contig912:2666..28521680791823.5780132-CDS-P-littoralis_Contig912:2666..2852Pylaiella littoralis U1_48CDSP-littoralis_Contig912 2667..2852 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791823.595898-UTR-P-littoralis_Contig912:2852..28611680791823.595898-UTR-P-littoralis_Contig912:2852..2861Pylaiella littoralis U1_48UTRP-littoralis_Contig912 2853..2861 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig912.1.1prot_P-littoralis_Contig912.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig912 2667..2852 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig912.1.1

>prot_P-littoralis_Contig912.1.1 ID=prot_P-littoralis_Contig912.1.1|Name=mRNA_P-littoralis_Contig912.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=62bp
MSIKLRELIRAVRACKTAAEERGVVAQECARIRTAFKEEDIEFRNRNVAK
LLFIHMLGEAI*
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mRNA from alignment at P-littoralis_Contig912:2667..2861-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig912.1.1 ID=mRNA_P-littoralis_Contig912.1.1|Name=mRNA_P-littoralis_Contig912.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=195bp|location=Sequence derived from alignment at P-littoralis_Contig912:2667..2861- (Pylaiella littoralis U1_48)
CGTAACGCCATGTCGATCAAGTTGCGCGAGCTTATTCGGGCGGTGCGGGC GTGCAAGACCGCGGCGGAGGAGCGAGGCGTCGTGGCTCAGGAATGTGCAC GCATCCGGACCGCCTTTAAAGAAGAAGATATCGAGTTCCGGAACAGGAAT GTCGCCAAGCTCCTCTTCATCCACATGCTAGGTGAGGCGATATGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig912:2667..2861-

>mRNA_P-littoralis_Contig912.1.1 ID=mRNA_P-littoralis_Contig912.1.1|Name=mRNA_P-littoralis_Contig912.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=186bp|location=Sequence derived from alignment at P-littoralis_Contig912:2667..2861- (Pylaiella littoralis U1_48)
ATGTCGATCAAGTTGCGCGAGCTTATTCGGGCGGTGCGGGCGTGCAAGAC
CGCGGCGGAGGAGCGAGGCGTCGTGGCTCAGGAATGTGCACGCATCCGGA
CCGCCTTTAAAGAAGAAGATATCGAGTTCCGGAACAGGAATGTCGCCAAG
CTCCTCTTCATCCACATGCTAGGTGAGGCGATATGA
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