mRNA_P-littoralis_Contig91.117.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig91.117.1
Unique NamemRNA_P-littoralis_Contig91.117.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig91.117.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig91contigP-littoralis_Contig91:367722..368102 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size371
Hectar predicted targeting categorysignal peptide
Exons2
Cds size198
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791814.4446628-UTR-P-littoralis_Contig91:367721..3678031680791814.4446628-UTR-P-littoralis_Contig91:367721..367803Pylaiella littoralis U1_48UTRP-littoralis_Contig91 367722..367803 +
1680791814.494188-UTR-P-littoralis_Contig91:368011..3681021680791814.494188-UTR-P-littoralis_Contig91:368011..368102Pylaiella littoralis U1_48UTRP-littoralis_Contig91 368012..368102 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791814.460782-CDS-P-littoralis_Contig91:367803..3678041680791814.460782-CDS-P-littoralis_Contig91:367803..367804Pylaiella littoralis U1_48CDSP-littoralis_Contig91 367804..367804 +
1680791814.4827254-CDS-P-littoralis_Contig91:367814..3680111680791814.4827254-CDS-P-littoralis_Contig91:367814..368011Pylaiella littoralis U1_48CDSP-littoralis_Contig91 367815..368011 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig91.117.1prot_P-littoralis_Contig91.117.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig91 367804..368011 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig91.117.1

>prot_P-littoralis_Contig91.117.1 ID=prot_P-littoralis_Contig91.117.1|Name=mRNA_P-littoralis_Contig91.117.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=66bp
MNCIISAMYIICMYISFCFVRMAVFSQRFSVDLSTTAVETSCNEAVNGTR
IAEITPIFLNISDPS*
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mRNA from alignment at P-littoralis_Contig91:367722..368102+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig91.117.1 ID=mRNA_P-littoralis_Contig91.117.1|Name=mRNA_P-littoralis_Contig91.117.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=381bp|location=Sequence derived from alignment at P-littoralis_Contig91:367722..368102+ (Pylaiella littoralis U1_48)
GTTGGGGGTATATATTGGAACTTGTTTGCGTTCATCTTGTGCCTTTTATT
TACGGCCGTATATTTTGCTGTGAGGGTATACCAGTACTCCGAGTGAATTG
TATCATATCTGCAATGTATATAATATGTATGTATATATCATTTTGTTTTG
TGCGTATGGCCGTATTTTCGCAGCGATTCTCCGTCGATCTAAGCACTACA
GCAGTTGAAACCAGCTGCAACGAAGCTGTCAATGGCACGAGAATAGCGGA
AATTACCCCCATATTTTTGAACATTTCCGACCCCTCCTAATAAAAAAGGC
CATATATTTCTGAAAATATGTTTGTTTTTTCGAGTATACCGTTGTCTTTG
CTTGGCCAAACCCCGTCGGATAAAGCTAAAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig91:367722..368102+

>mRNA_P-littoralis_Contig91.117.1 ID=mRNA_P-littoralis_Contig91.117.1|Name=mRNA_P-littoralis_Contig91.117.1|organism=Pylaiella littoralis U1_48|type=CDS|length=198bp|location=Sequence derived from alignment at P-littoralis_Contig91:367722..368102+ (Pylaiella littoralis U1_48)
ATGAATTGTATCATATCTGCAATGTATATAATATGTATGTATATATCATT
TTGTTTTGTGCGTATGGCCGTATTTTCGCAGCGATTCTCCGTCGATCTAA
GCACTACAGCAGTTGAAACCAGCTGCAACGAAGCTGTCAATGGCACGAGA
ATAGCGGAAATTACCCCCATATTTTTGAACATTTCCGACCCCTCCTAA
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