mRNA_P-littoralis_Contig908.3.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig908.3.1
Unique NamemRNA_P-littoralis_Contig908.3.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig908.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig908contigP-littoralis_Contig908:5083..9433 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size187
Hectar predicted targeting categoryother localisation
Exons2
Cds size186
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791813.2228014-UTR-P-littoralis_Contig908:5082..50831680791813.2228014-UTR-P-littoralis_Contig908:5082..5083Pylaiella littoralis U1_48UTRP-littoralis_Contig908 5083..5083 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791813.234997-CDS-P-littoralis_Contig908:5083..51641680791813.234997-CDS-P-littoralis_Contig908:5083..5164Pylaiella littoralis U1_48CDSP-littoralis_Contig908 5084..5164 -
1680791813.2466424-CDS-P-littoralis_Contig908:9328..94331680791813.2466424-CDS-P-littoralis_Contig908:9328..9433Pylaiella littoralis U1_48CDSP-littoralis_Contig908 9329..9433 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig908.3.1prot_P-littoralis_Contig908.3.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig908 5084..9433 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig908.3.1

>prot_P-littoralis_Contig908.3.1 ID=prot_P-littoralis_Contig908.3.1|Name=mRNA_P-littoralis_Contig908.3.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=62bp
MQNPGLADSGNRCSAFHRGGQACDFRHTRPRTGKKNFTGYEPGRDLGVIL
GRLSESSRKTT*
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mRNA from alignment at P-littoralis_Contig908:5083..9433-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig908.3.1 ID=mRNA_P-littoralis_Contig908.3.1|Name=mRNA_P-littoralis_Contig908.3.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4351bp|location=Sequence derived from alignment at P-littoralis_Contig908:5083..9433- (Pylaiella littoralis U1_48)
ATGCAGAACCCCGGTTTGGCGGATAGCGGGAACCGTTGTAGCGCATTCCA
CAGAGGAGGGCAGGCTTGTGACTTTCGGCACACGAGACCGAGGACCGGGA
AAAAGGTTATGGCTTTCGTCGACGAGGCGGGCTTCGTACGCAGGTTCCCA
GGCTTGCAGTCGAAGGACCTATCCACAAACATGCTGGCACTGTGTAAACG
CGAGGACTGTTTGTTGCCACTGTTAAGGCTGCGCCTGACCCCCCTTCTTG
AGGGTAAAATATGTCCGGAGTTCGTTCCGAAAATGCTGAATAGATTTATT
TTAGCCAATCATATAACAACATTTTGAGTGACGTTTACATCTGTTGGAAT
CGAAGAGCCCAAAGAACAAACCAAAGAACGGCGAGTACGTGTGTGTGCCG
GTGCTGCTGCTGCTCTCACGATTTTCTCTCAAGCGCTCTAGAGGCGCGAT
GCTGATGAAGCAGCAGTAACAGCAGCACTAGCAGTGTGCACTGCTGTGCA
AAGCAGCCGCCTGTGATTCAACAAGCAGCAGTAGCCAGATCACACCATCA
GTGGGCCGCCATGGCCGATAGCGCGCAAGGACGCGGACAGCAGCCCCAGA
GCAATAATCAATCTCAACAAGCAGAGAGCGAGCCTGCTCCTGCTGCTGCT
GCTTCTGCTTTCGATGGCTTCGTCTTTGCTATCCGTATCGGATGTCTCTT
GCACATCCTGCACCTCGCGGTGAATGCGGGGATGCAGTCTCTTTTCTTCA
TGGGCCCCCTCACTCAGGCGTCATGGCACGAGTGGCCAAAGCCTCACCTC
GTCGCTTTACTTGGATCACTTTGGTACAACACCTCCAGGTCGGATTCATC
TTGTATTTCATGGAAAATATTTCAAAACCTGGTGTTTGGAAGCAAAGGGG
TCTTGTGGAAAACAAAATTCATCAGGCCCGCCGAAACGCGGTGGATGGTG
ATTTGGGAGGGCGCAGCCATTCTTGAGGAACGCTGGGAGCAGGTCCGGTG
GCTGTTTGTGGAGTGGGCTGCCAAGGTTCTACTTCGCACCCCGTTTATGT
CGTACTGGTTCAAGGCGACGTGCATGCTCCAAAATCCTCTCATCCGAGTA
CACGCTAAGTTTTGTGGTGCCCTGCACAAGGCGATCCTGAGTTGGGCATA
CAACTGGCTGCGTGGCGAGGGTGGATACTTCTTGAAGGGCCCTGATGGAG
TACCGAAGCGGCTGCCACCTGGGATGCGATTGGTCGAAGTACCTGACTTC
TCCCTCTTGTTACTCTCCCGCCTGATCGAGCTTCGCGAGCACCCATGCAA
GTATTTTCCTGAGCTGCTCTATTTTGCGATGCAGAAGCTGGACGACGAAG
AGGTGAAAAAATGATTTCCCAGCAGCAGCTGTTTTTTATCTGAACAAATG
AATGAAAAAATGTTTTTACAGCAGTCTGAATTTGACTGAAACAAAGAGGG
AAAAATGATTTTTTTCCAAATCAAGAAAGAGAAGGCTGAGCAAAACTTTT
TGCGGAACATCTTCTGCTGCTGTTTGCCTGCTCTCTTTCTCTGCTATCTC
TGTCGTCTCCTGCTCGCGAGCGCCGGCTCGCATGCGTTGTGACTGGACTT
TCACTACCACCGTTCGCAAGCCTCACGAGTTTCCTGTATTTCGCCTACCC
CTGCGTTCTCTATTCTCCTGACGCGTGCTGCTCGACCAGTTCGAGGCATT
TTTGCAAAATTTCGAAGAAGGTGGCGGCTTTTTTTGGGAGATGGAGCAGC
GGTGGATCAAATGGACGGACAGGCACCAGCACCTTCCCTCAGCATGGCGC
GCCTGGGGTGTAGTTCTTTTTACGAAGGAAAGTGGGCTGGGTCGGAGAAG
GCTTTTGACCAGCAGATTCATGGACTGCAGCTCCCTTTTCCTTTGGCTGG
CCTGCATCCTCGCTTCAAGAACTTGCTGCTTAAGAGTGAGGGCTCGTTGA
GACTCGGCAGCAGGAGTAGCAGCAGCAGCAGCACCAGAGGCAGAGGCAGA
ATTGGTTCCAGGCAAATTACACCCAATCTTCTCCGCCATTGCCTTGATTT
CTTCGTCCATGCTGCCGTTCGCCAGAGACAAGCGCCTCACCTCCTCCGTC
AAACGATGCACCTCCTCACGCTCAGCAGCCAGCTTTTCCTTGGCAGCGTT
GGCCGCGCGTTGCCACCACATGCGATCCGCTGCTGCTGCCGTTACGGCCT
CCTCTCTCAGCTGCTGCTGCTTTTTGGTTTCTCTTTTTTCGTCCTCCAAC
CTTTTTTTTGCATCCTCCAACTTGTTTTTCTCGTCCTTTAAATCTTTTTC
AACCGCTTGACGCGCTGCCGTCTCCTTTCGCCTTTCGCCACGGGCGACTG
CCAACAGAGCGTGCGCGTTACGGTTGCTAAGCTCCAACGCCTCAGAGTCA
GCGCGCCTGATGTTGGCGTCAAGTATCGCTTGCCGACTCCTTTCGGTCAT
GGAGGAGCAGGTTTCAGCAAAAACCTTTGCTCCTTGCTTCGCGAATCGCG
CTTGTCTCTTTTTTTTTACCGAAGCTCCCGTTTTCTTTGTGCGAGCGTTC
GCCATAATAGACGATTCTGCAAGAGGTGCTGCTCGACGTTGCCGTGGAGG
TTTCGTTGACGGTTTGTTGCGTTGGCTCGGCGAAAAGTAGAGCTAAGGTC
TGTTCGCAATCGATTTGCATGTGTCACTGAGCCAGAGCTGGCAGAGAGGC
TTCACCGCTAAAAAAGGCCAAAATAACACTGTTTTAGAGTCGTATGGGCC
CCAGACACAAGCAATTGAAAAACTGTGCGGACAGCCATCAGATCTCCCAT
GTACACAGGTACGTATGCAGTGGAGAGAGCCAGTTGCTCGCCTGAATCGA
GTATTTCTCGATACCGTTTTGTGCAGAAAGCAGTGTTCGTTGAAGTGAAA
CCGATTTTTGGCGTCATCAGCCGCACCGGCGGAATACGAGTATTTCCTGG
TCCCCAGCCAAAAAAAAATCGAATAATCATGCCATATTTTACCCTCAAAA
AGGGGATCAGGCGCAGCCCTAACTGTACAACAAGCACGAGCAGGAGGAGA
GCAAGGAGCGAGTAAGACGCAAAACGAAGCGGAAGCCACGCCACAGCAGG
GTGTGGAGCGCTACCCCGGAACCTGTGAGGCATTTGAAACGCCAGCATCT
TGACCGCTACTGTAATTCACCTAAGGCGGTGGGCGCTTTGCTGAGTGCTG
TTTCTATTACAGGGTGTGTATTAGACATGTGCGGCGAGCCTGGAGACGCC
GTGGCGACGCGGCTTCGAGGGACGTGCGAAGTCATGACGAACGACGTGAA
CTCACGGCAAGGCTACATCTTATGTGTCGAGAACAGCAATACTTTTTGGG
GGCGTTTTGGATAACGTTTCGAACAGGACGTTTTGGAGCGCTCGACCGTA
TACGTCAAAGCTTAACAGGAGGTGGTTTAGAAAACAAATTCCGAAAAAAT
AAAAGCATCCCCTGTTCCTTTGGGGCGGTTTGATGGTTGACAAATTGACA
AAATTGACATTGCACTGATGTAACCGGTTCGCTCTTCTGGTCACCACTCT
CGAACGAATAAAGTCACAGCAATGCTAAAGCCATGCCTCGCGAGCTGTGT
ACATAGTCCTTCTGCGGTGGTCATCTGAGGCCGCGAGGTGTCGATAGGCT
AGCGAAAAAAGTTTGCAGGTATCATCGATGACGTGTGAAGAAAAGAAAAA
ATATCAATACAGCTCCCATTTGGTGGTGTTGATTTCTTCTTTTTTCCACA
CGTCGTCGATTCATGCAATCCTTCTTTACTAGCCTATCGATGCCTAGCTG
CTTCAGATGACCACCGCAGGAGAAAGACCTTGTACAAAGCTCGCGAGGCA
TGGCTTTACCATTGCTGTGGCTTCTTTCGTTCGAGAGCGATGAACGAAAT
TTAGACAAGCGTGAAAGTGTTTACTCGCCCCACCAAATAATATGCTGTAG
CACTATAATGCCGAAGGAGGACAAAAAAAAGTAGACGGGTGTTTTTATGG
AGTGCTGTATATCAGTGTCGTCCTACACTTATTTGGCAACATGTGATGAG
ACGTTTATCGCCTACTCAGAACTCTTTGCCGCAAGGTTGTCTTTCGGTTG
CAATGACTCGTATCCCCCCCCCCCCCCTGTTTGATACTTTGGCACGAGGG
TAAAGGATATTTCACCCTCTTAGGTTCCTCGACAACCGCGCATGCAGAAA
TTCCGTTCTTTTGTGACGCTGTCGTACTTGTCTGTGACTGTTCGTTTCGC
TGTTTTCCCGACATGCCAGAATTTTACCGGATACGAACCTGGACGTGACC
TCGGTGTCATTTTAGGACGACTTTCTGAAAGCTCTCGGAAAACAACCTGA
C
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Coding sequence (CDS) from alignment at P-littoralis_Contig908:5083..9433-

>mRNA_P-littoralis_Contig908.3.1 ID=mRNA_P-littoralis_Contig908.3.1|Name=mRNA_P-littoralis_Contig908.3.1|organism=Pylaiella littoralis U1_48|type=CDS|length=186bp|location=Sequence derived from alignment at P-littoralis_Contig908:5083..9433- (Pylaiella littoralis U1_48)
ATGCAGAACCCCGGTTTGGCGGATAGCGGGAACCGTTGTAGCGCATTCCA
CAGAGGAGGGCAGGCTTGTGACTTTCGGCACACGAGACCGAGGACCGGGA
AAAAGAATTTTACCGGATACGAACCTGGACGTGACCTCGGTGTCATTTTA
GGACGACTTTCTGAAAGCTCTCGGAAAACAACCTGA
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