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Homology
BLAST of mRNA_P-littoralis_Contig901.5.1 vs. uniprot
Match: A0A6H5KUY0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUY0_9PHAE) HSP 1 Score: 159 bits (401), Expect = 6.640e-41 Identity = 73/143 (51.05%), Postives = 98/143 (68.53%), Query Frame = 2
Query: 326 SLNLDVTTYAEWVLNRMKLITWKAQPNISEAELFQVVPGYYAAMTVKESGETFSNEGKMAAAVRHYEAFTAMAFLRWLTETADFSNSPAWLDKDIMGRNSMGEQLLGDARKAGTKGNLFQESSTALWRTRFDDVSKKIRLQWN 754
SL L+ ++WV+NRMK W +PN+ A LFQ +PG+YA M+VKESG+ +S + A AV+ Y++F AFLRWL E DF+ +PAWL KDIMGRNSMG ++L +A GT+G L+ E+ +LWRTRF DV +R WN
Sbjct: 5 SLMLEKNASSDWVINRMKGTNWGDKPNVGHASLFQFLPGFYAGMSVKESGKCYSESDRNAEAVKVYKSFAVPAFLRWLVEKYDFTTTPAWLTKDIMGRNSMGPKILLEAANKGTQGKLYDETEASLWRTRFGDVLLALRSDWN 147
BLAST of mRNA_P-littoralis_Contig901.5.1 vs. uniprot
Match: A0A6H5LQJ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LQJ9_9PHAE) HSP 1 Score: 119 bits (298), Expect = 1.630e-27 Identity = 55/106 (51.89%), Postives = 75/106 (70.75%), Query Frame = 2
Query: 326 SLNLDVTTYAEWVLNRMKLITWKAQPNISEAELFQVVPGYYAAMTVKESGETFSNEGKMAAAVRHYEAFTAMAFLRWLTETADFSNSPAWLDKDIMGRNSMGEQLL 643
SL L+ ++WV+NRMK W +PN+ A LFQ +PG+Y AM+VKESG+ +S + A AV+ Y++F AFLRWL E DF+N+PAWL KDIMG NS+G ++L
Sbjct: 5 SLMLEKNASSDWVINRMKGTNWGDKPNVGHASLFQFLPGFYVAMSVKESGKCYSEPERNAGAVKVYKSFAVPAFLRWLVEEYDFTNTPAWLTKDIMGSNSIGPKVL 110
BLAST of mRNA_P-littoralis_Contig901.5.1 vs. uniprot
Match: A0A6H5KJ61_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ61_9PHAE) HSP 1 Score: 80.9 bits (198), Expect = 1.530e-14 Identity = 38/78 (48.72%), Postives = 52/78 (66.67%), Query Frame = 2
Query: 326 SLNLDVTTYAEWVLNRMKLITWKAQPNISEAELFQVVPGYYAAMTVKESGETFSNEGKMAAAVRHYEAFTAMAFLRWL 559
SL LD ++WV+NRMK W +PN+ A L Q +PG+Y AM+VKESG+ +S + A AV+ Y++F AFLRWL
Sbjct: 5 SLMLDKEASSDWVINRMKGSNWGDKPNVGHASLSQFLPGFYVAMSVKESGKCYSEPDRNAEAVKVYKSFAVPAFLRWL 82
BLAST of mRNA_P-littoralis_Contig901.5.1 vs. uniprot
Match: A0A6H5KB89_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB89_9PHAE) HSP 1 Score: 73.6 bits (179), Expect = 1.160e-10 Identity = 50/135 (37.04%), Postives = 76/135 (56.30%), Query Frame = 3
Query: 1338 SPRSIKDMKKEGEKGAGVPVSRGTKRKEEVVDRRQAKREKEREHMTKTSARVVDLLENPRESEADVVFIGLATELRAKTREDAIRAARAALLQERELEKIELQMQYNLLRGAKQEEEATMVMNELLALLRSPLPE 1742
SP SI+D+KK+G GAG+P SR ++K+ KREK + + +A ++ LL+NP ESEAD V I E++ R+ IR A+ ++ ++R LE L Q L + E + +LLAL +PLP+
Sbjct: 63 SPASIRDLKKQGATGAGIPASRTERKKDXXXXXXXVKREKAAQETKEFNAELLGLLKNPVESEADRVIIDFVREMKKTNRKKDIRLAKKSIQEDRTLEVTTLHEQIALYKEMGNEGQVKETREKLLALYATPLPQ 197
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Stop | 1 |
| Start | 1 |
| Model size | 3520 |
| Hectar predicted targeting category | other localisation |
| Exons | 3 |
| Cds size | 1167 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1680791809.703164-UTR-P-littoralis_Contig901:82684..83346 | 1680791809.703164-UTR-P-littoralis_Contig901:82684..83346 | Pylaiella littoralis U1_48 | UTR | P-littoralis_Contig901 82685..83346 + |
| 1680791809.7229362-UTR-P-littoralis_Contig901:85055..85161 | 1680791809.7229362-UTR-P-littoralis_Contig901:85055..85161 | Pylaiella littoralis U1_48 | UTR | P-littoralis_Contig901 85056..85161 + |
| 1680791809.7335086-UTR-P-littoralis_Contig901:85659..86249 | 1680791809.7335086-UTR-P-littoralis_Contig901:85659..86249 | Pylaiella littoralis U1_48 | UTR | P-littoralis_Contig901 85660..86249 + |
| 1680791809.757563-UTR-P-littoralis_Contig901:87416..88411 | 1680791809.757563-UTR-P-littoralis_Contig901:87416..88411 | Pylaiella littoralis U1_48 | UTR | P-littoralis_Contig901 87417..88411 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1680791809.7472763-CDS-P-littoralis_Contig901:86249..87416 | 1680791809.7472763-CDS-P-littoralis_Contig901:86249..87416 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig901 86250..87416 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig901.5.1 >prot_P-littoralis_Contig901.5.1 ID=prot_P-littoralis_Contig901.5.1|Name=mRNA_P-littoralis_Contig901.5.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=389bp
MKKEGEKGAGVPVSRGTKRKEEVVDRRQAKREKEREHMTKTSARVVDLLE NPRESEADVVFIGLATELRAKTREDAIRAARAALLQERELEKIELQMQYN LLRGAKQEEEATMVMNELLALLRSPLPEPPAPAPIPTREPRTSTKTGVSA ARAGQGGESIDLTAPDGGRFETGGEISGSGEGAPGGIGSSGEEEEEDLSF TADHLELLGGGPRGSESDAGGAAGSGVVLGAESASHSPVVPYSGASVVTE LGVTNRPDTTTAPLMSASTSTSAVAASPSSIGQAQSTLGDAAEMPSASEW PAARVDSYSAQDRMEIKKAEEASAVAYAAHVGRYRQPAATAGSATDKAAS AFTAFMAKGGPAAATTTVMAGDGGSGSRSGGCIQERTI* back to topmRNA from alignment at P-littoralis_Contig901:82685..88411+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-littoralis_Contig901.5.1 ID=mRNA_P-littoralis_Contig901.5.1|Name=mRNA_P-littoralis_Contig901.5.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=5727bp|location=Sequence derived from alignment at P-littoralis_Contig901:82685..88411+ (Pylaiella littoralis U1_48) GCGGGATCTTATGGTCCACGGATGTTGGCCCAAGGATCTTTAAACATATG
AGGGCAAAAATCGTGGGCCGAAAAAAATTACAGGCCATCTTATGGGAAAC
ACGGATTATTGTGGGCACGGATTTTGGCCAGTCCTGGTTTTATACTGTTG
TGAGAAGCATGTTGCAAACAGGGACACGAGCTTCACGTATCATACAGCCG
CGCACGGCAGCGGCGCAACACACACTCGCTCACCGCAAAGCACCGTGGCA
CGGAACTCCACACACACACTGGTGCTTCCACACACAACAACCGAAGTATA
GCAGTTGCAGGCGTCCATGCCGGAATCGTTGAATCTAGATGTCACCACGT
ACGCGGAATGGGTCCTCAACAGGATGAAGCTCATCACATGGAAAGCCCAA
CCAAATATTTCAGAAGCTGAGCTGTTCCAGGTGGTACCCGGGTACTATGC
AGCGATGACCGTGAAGGAGAGTGGCGAAACCTTCAGCAATGAAGGAAAAA
TGGCGGCCGCGGTCCGTCACTACGAGGCCTTCACCGCCATGGCCTTTCTG
CGGTGGTTGACCGAGACCGCCGATTTCTCAAACTCTCCTGCCTGGTTGGA
CAAGGATATCATGGGCCGCAACTCCATGGGAGAGCAGCTCTTGGGCGATG
CCAGGAAAGCAGGTGACACATGCTTCGTAGGCAGAGCATCAGAAAGAGCA
CTGCAACTACTCTGCTGTGCTGTTGTTGTAGAATGCTTTTGAATTCCCTG
CAGACAACCGTGGTGGGGAGTCAGTTGGATTAGCTGCCTCCGACTCGGTG
CAGCTCGGGGGCGGTGACGAAACACACGCTACAAATAAGAGGGATGATCA
GTCACACAGCAGCTTGTTCCTTTGGGCGGCAGCACAGCCCACGCTTTCCT
CCGGTATCGTATCACAGGTATCCCGTAGCTGTTCAATCGCCTCTATCAGA
ACATTACTCAAAATCTGACCAACCCGTGGTGACGCGTAGGGCATAACTTC
TGCGCATGTGATGGTGCGATCGGCACAGCGGCATTGACTGCAACTACGCG
CAGTTTTACCGCGCATGATGCAAGAAAAAAGCAAAACCGCAGCAGTAGAA
GAGTACAGCAGTCCCTGTGCCTGCTGCTGTACAATCATGGCACCGCACGT
TGGGCTTGTCGACACCAACACGAAAACCTAAGAACAACGGCAGCAGTATG
TTTGACCTTGATGAAGCCTGTCGCTGCTATGGTAGATCATATCCTTACTA
CATGGCTTATCCCGGAATTCCTGGAGCTCCGCGTACCCTGCGTAGTGAGT
GTGACCGAAAAAAGATCGAGGTATTATATAACCTCAACACACGCATGATA
GTAGAAGCGCTCAACCACCATCTTGCAACGGCTTGTCCATCCCTGGCGAA
GACTCTTTACTGCTGTTAACCGTAGTTCTTTATCGCCGCTTGCGACACCT
TTAGCATGTTGAACAGCAAAGGGAGAAGTGCATCTATACTGTTGCATCGG
CTGTGTCGCAAATGCTGTGCTGTGCTGCTGGTATATGGTCCATGAAGAAC
TGCTCAAGAACCCTTGTTGTGGTACTATGGCAATATGAGCCTTGGGGAAC
TCGTCGGAGATTATTGTATCGTTTGTTTTGTGGGAGTGGGGGAGCCCATT
CGGGTTTCGGGACGTTCAACTCAATCCGAACTCGCCACGGATTAAACGAT
TTTTTTTCACATGATTTGTGCGGCAAGTTTGTTCACCACCTACCACTGCT
GCTGCATATACAACGTGTGAATGTATGCGGCTGGCGAGTCAGTGGCTCGC
ACACCGAGCAGCAGCATAAACTGTTCGTTCGGGGCATGCTGCAGGATATC
TCACACAATACATGCAGCTTAGATTACATTGCTGCTGTTGGCGCTGCTGC
CGTTGTATTGCAAGTGCTTTTATCGCTCGCACGCATCAATAACATATCGC
ACAGCAGCCGTTTACCACGCACAACCACAAGACATACATGCAGCAGCAAT
AATTCGCACACAGCAGCAACTGGGCATAACTGGGCATAATTGTTTTTGCT
GCTCAGCCAGATCCTACTGTACGTATGATATGATATGATATGATATTATA
TGATGTGCGCCTTTGCATCCACAAGGGTGCCATACAGCTGTTCGGCAGCA
GCACATACAGCAGTTTCACCACTGGAAAAAACAGGAGTACATTTGGTTTG
AATCAGTTGTCGCTTGTGTTTTCGATCAGTGCTCTGTTTGGGGTTTGGGC
CGCCAAGTGGACCCGCCAAAAACGATCGACAATTGGCGATCGCACTCCTC
ACCACCGATGTTCTTGATGTCGCCCGGTGTGAACCAATATATTCGCTGTT
TGCTTGCTCAACTTTAAACAGGCACGAAGGGAAATCTGTTCCAAGAATCG
TCAACGGCGCTCTGGCGAACAAGGTTCGACGACGTTTCGAAGAAAATCCG
GCTCCAGTGGAACCCCATTTGGGACAAGTAAGTGACTCGAAGAAGTGCCA
TCTATGCCGTGATGTGTTGTGGCAGGTTTGCGTCCGGGCAAAACAGCAAC
ATTATCATGAGTCGAAGTACACATCAACAACAGACGGTGATACCCGGGGG
TTTTAGGGATGCTGCTCCTGTTGGCGATACCCGGGAACTTGTGTAGGTTT
GTTTTAGTCGGTGATACCCGAGGACGGGGTGGAAGATAAGCGATGCCATC
GCCCGTAAACCCTCGCGCCACACAATATACAGTTGAAATCCCCCGATTTG
ATACAAACCATTTCGGTGTTCCTTGGGAGGCGGTGTAAATGTCCTTCGAA
TTATGCTTCACGTGGCAAGTGGATCTCGTGGTCTGAGTTAGTTTTGTAGT
TGCACTATTTAACAAGCGCTTCTGTTCATCACTCGTAGCGGCGCCCCTAT
GAAGCCACTTTTGCTAATGATGTAACACAACCTTGTTATTGCTGGACCGA
TGTTGCCGCTGTGTTCCCCATGCAGATTGCACAACACGGACGGCACGAAG
AAGTCAGGGGAACAGGAGGCAGACGTCATGCAGGGTCTCCATGAGGAAAT
CTGGAGGCAGACCCAGGAAGAAAAGAGGATTGCCAGGGATCTCGCCAAAA
GCAACAAGAAGAAGACTGCTATCGCCAAGGCCGCCGAAGCCGCTGGGGAT
GAGGCCCGGGCGGTGTCCTTGGCCGCAGGCAAGACGGAGGAAGAGTCCGA
CGCGGTCGCAGCCGAGGCGAAAGCGGCGTCCTTGGCAGGCGCAGCCGCGC
AGGAGAAGGCACAATTGGCGGCCGTTGCCGGGGCAAAGGCGGCGTTGAAG
GCCAAAGCTGATGCCGGGGATACGGCAGCGTCCTTGGCGATCGCTGCTGC
GGCCAAGGCAAAGGTAGAGGCGGAAGCACCTGGTCCCATGCCACCGAACT
ACGTGCACAAGTACAGCCTCCTCTTCGCCGTGTTGGGGAGGCCGGCGGGG
CCCGGGAAACAGCACCACCAGCTGTCTGCCGCACTTTCTTCTGGCCCAAC
AGCCGCACCCGCGGGGTTGGTGCCGAAAAGGGAGCCGCCTTAAGTCCCCT
CGATCGATCAAGGACATGAAGAAGGAGGGCGAGAAGGGAGCGGGAGTGCC
TGTTAGCAGGGGCACGAAGAGGAAGGAAGAAGTGGTCGACAGGAGGCAGG
CAAAGCGGGAGAAGGAGCGCGAACATATGACCAAAACCAGCGCGCGTGTT
GTCGACTTGCTAGAGAACCCTCGTGAAAGCGAGGCCGATGTCGTCTTCAT
TGGCCTCGCGACGGAGTTGAGGGCGAAAACCCGCGAGGACGCCATTCGTG
CCGCCAGGGCTGCCTTGCTGCAGGAGCGGGAGTTGGAGAAAATCGAGCTC
CAGATGCAGTATAACCTCCTACGTGGGGCCAAGCAGGAAGAGGAGGCAAC
GATGGTGATGAACGAGCTCTTGGCGCTGTTGAGATCGCCTCTTCCGGAAC
CCCCGGCACCGGCACCCATACCGACCCGTGAGCCTAGAACGAGCACGAAG
ACCGGAGTGTCTGCTGCCCGTGCGGGTCAGGGAGGAGAATCCATCGATCT
GACCGCCCCGGATGGCGGCCGCTTTGAGACGGGAGGAGAAATCTCAGGAT
CAGGGGAGGGCGCACCCGGGGGCATTGGGTCCAGCGGAGAGGAGGAAGAA
GAAGACCTGTCCTTCACTGCTGACCACCTCGAACTGCTGGGGGGGGGTCC
GCGGGGCTCTGAATCCGACGCGGGGGGGGCTGCGGGTTCAGGTGTCGTCT
TGGGAGCCGAGAGCGCATCGCATTCACCGGTCGTGCCATATTCGGGTGCA
TCAGTAGTCACCGAGCTAGGGGTGACGAATAGGCCGGACACGACAACTGC
GCCCCTCATGTCAGCATCGACGTCAACGTCTGCCGTTGCGGCGTCACCTT
CTTCGATTGGACAGGCGCAGTCCACGCTCGGGGACGCAGCGGAAATGCCT
TCAGCGTCGGAATGGCCAGCTGCACGGGTGGACTCGTATTCAGCCCAGGA
TCGTATGGAAATAAAAAAAGCGGAGGAGGCGTCGGCGGTCGCGTACGCCG
CCCATGTCGGTCGCTACAGGCAACCGGCTGCGACGGCAGGATCGGCCACG
GATAAGGCGGCGAGCGCGTTCACGGCTTTCATGGCCAAGGGCGGGCCTGC
GGCTGCGACGACGACGGTGATGGCTGGCGACGGCGGGAGCGGGAGCAGGA
GCGGCGGCTGCATACAGGAGAGGACAATCTAGAACCGGTGCCGCACCGAG
CTTCAAAGGGGACACCGGACGGGGGAGGGATCATTGGTCGTTGCGAATCT
CATGGGCGGTTGTTGAGCACTGCGCTGTATGCAGCATCACGGCTTAGATT
TTTGGTTGCGTGACTCGTCTCAGATGCAATGTGAATTGGTTTCATTAATT
GAGATTCTACACATGGTGATGCCCGCCCATCCCTCTCCGATAAGCGTTTC
CGCGCGCAATGACTCGTCTGTTGGGTGACGGTACCCTTCTTAATGGAGCA
AGCCAGTGGCAACCTTGCGGGTGCTCTATGATAGCGTTGACTTTTCTGTT
TTTTTATTTTTGTGCGTATTTTATTTTTGTTGGTGTTGTTCTATTGTTTT
GGGCGTTTCGTATGACTTTCATTAGTGTCGATGGGTAAAACACTCATCAT
TTCGAATACGGGCTCAGTTCTTCCGAGTCAATTTGCTGTTGTGTTGGGGT
GTTTTAGTCACTTTTGGGGGTTGGTTTTGTTTGGCTTTGTTTTGTTGTCC
GTTGATCCTTCAATCTAGCACTTCTGTTGAATGCACCGTTGATCCTTCAA
ACTAGCACTCACTGCTGTTGAATGCAGTTTTGACGAACTCCAGGGGAGGG
GTAACAATCCATTACTCTAATCAACAACAGCTGCAGATGTAGCTTTACGA
AATGTTTTGGTGCCGATTAATGAGTGAGTATGGTGTTCGCTGCACCTACT
ATCGAAGAGCAGCCAGAACTTCGTTCTTTTTTATTGTTAACTCGGCCGTG
ATATTTCAGGGCTGCGGGACTGCTTGTAGTTCGAGAGTGTTCAGATATTC
GAGCTGCAGAATTCGATGGACCATATGTTACTCTTGTCCTGTTTAAATAC
GGATGTTTTCACTTTTGTCGCTACGTTGGAACTTTCTTGAGGTTTTTCGT
GAGTCCGAAGTTCTTGCAGGATTGGTCGATGGGAAAATATATATGTATGG
GTGTGCTGTGTAAATTTATGGTTGTTC back to topCoding sequence (CDS) from alignment at P-littoralis_Contig901:82685..88411+ >mRNA_P-littoralis_Contig901.5.1 ID=mRNA_P-littoralis_Contig901.5.1|Name=mRNA_P-littoralis_Contig901.5.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1167bp|location=Sequence derived from alignment at P-littoralis_Contig901:82685..88411+ (Pylaiella littoralis U1_48) ATGAAGAAGGAGGGCGAGAAGGGAGCGGGAGTGCCTGTTAGCAGGGGCAC GAAGAGGAAGGAAGAAGTGGTCGACAGGAGGCAGGCAAAGCGGGAGAAGG AGCGCGAACATATGACCAAAACCAGCGCGCGTGTTGTCGACTTGCTAGAG AACCCTCGTGAAAGCGAGGCCGATGTCGTCTTCATTGGCCTCGCGACGGA GTTGAGGGCGAAAACCCGCGAGGACGCCATTCGTGCCGCCAGGGCTGCCT TGCTGCAGGAGCGGGAGTTGGAGAAAATCGAGCTCCAGATGCAGTATAAC CTCCTACGTGGGGCCAAGCAGGAAGAGGAGGCAACGATGGTGATGAACGA GCTCTTGGCGCTGTTGAGATCGCCTCTTCCGGAACCCCCGGCACCGGCAC CCATACCGACCCGTGAGCCTAGAACGAGCACGAAGACCGGAGTGTCTGCT GCCCGTGCGGGTCAGGGAGGAGAATCCATCGATCTGACCGCCCCGGATGG CGGCCGCTTTGAGACGGGAGGAGAAATCTCAGGATCAGGGGAGGGCGCAC CCGGGGGCATTGGGTCCAGCGGAGAGGAGGAAGAAGAAGACCTGTCCTTC ACTGCTGACCACCTCGAACTGCTGGGGGGGGGTCCGCGGGGCTCTGAATC CGACGCGGGGGGGGCTGCGGGTTCAGGTGTCGTCTTGGGAGCCGAGAGCG CATCGCATTCACCGGTCGTGCCATATTCGGGTGCATCAGTAGTCACCGAG CTAGGGGTGACGAATAGGCCGGACACGACAACTGCGCCCCTCATGTCAGC ATCGACGTCAACGTCTGCCGTTGCGGCGTCACCTTCTTCGATTGGACAGG CGCAGTCCACGCTCGGGGACGCAGCGGAAATGCCTTCAGCGTCGGAATGG CCAGCTGCACGGGTGGACTCGTATTCAGCCCAGGATCGTATGGAAATAAA AAAAGCGGAGGAGGCGTCGGCGGTCGCGTACGCCGCCCATGTCGGTCGCT ACAGGCAACCGGCTGCGACGGCAGGATCGGCCACGGATAAGGCGGCGAGC GCGTTCACGGCTTTCATGGCCAAGGGCGGGCCTGCGGCTGCGACGACGAC GGTGATGGCTGGCGACGGCGGGAGCGGGAGCAGGAGCGGCGGCTGCATAC AGGAGAGGACAATCTAG back to top
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