mRNA_P-littoralis_Contig901.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig901.1.1
Unique NamemRNA_P-littoralis_Contig901.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig901.1.1 vs. uniprot
Match: A0A6H5L481_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L481_9PHAE)

HSP 1 Score: 130 bits (328), Expect = 7.220e-34
Identity = 67/69 (97.10%), Postives = 69/69 (100.00%), Query Frame = 1 
Query:  103 VPLVYNDYVKTSINLALENKKLFTVKQQMLFIQNVCIVYSCLAVKRNAGVVGTEAKRAAAAQGYREIAV 309
            +PLVYNDYVKTSINLALENKKLFT+KQQMLFIQNVCIVYSCLAVKRNAGVVGTEAKRAAAAQGYREIAV
Sbjct:   11 LPLVYNDYVKTSINLALENKKLFTLKQQMLFIQNVCIVYSCLAVKRNAGVVGTEAKRAAAAQGYREIAV 79
[Close]
BLAST of mRNA_P-littoralis_Contig901.1.1 vs. uniprot
Match: A0A6H5JZ15_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ15_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 4.820e-15
Identity = 36/70 (51.43%), Postives = 52/70 (74.29%), Query Frame = 1 
Query:  100 TVPLVYNDYVKTSINLALENKKLFTVKQQMLFIQNVCIVYSCLAVKRNAGVVGTEAKRAAAAQGYREIAV 309
            ++PL +N Y +T I++  +     T  + +  +QNVCIVY+CLAVKRNAG+V T+AK AA+AQGY++IAV
Sbjct:   11 SLPLEFNSYAETVISMLRDRSSGLTDAKLLKHLQNVCIVYACLAVKRNAGIVSTQAKHAASAQGYKDIAV 80
[Close]
BLAST of mRNA_P-littoralis_Contig901.1.1 vs. uniprot
Match: A0A6H5JXZ8_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXZ8_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 1.060e-14
Identity = 36/70 (51.43%), Postives = 51/70 (72.86%), Query Frame = 1 
Query:  100 TVPLVYNDYVKTSINLALENKKLFTVKQQMLFIQNVCIVYSCLAVKRNAGVVGTEAKRAAAAQGYREIAV 309
            ++PL +N Y +T I++  +     T  + +  +QNVCIVY+CLAVKRNAG+V T+AK AAA QGY++IAV
Sbjct:   11 SLPLEFNSYAETVISMLRDRSSGLTDAKLLKHLQNVCIVYACLAVKRNAGIVSTQAKHAAAPQGYKDIAV 80
[Close]
BLAST of mRNA_P-littoralis_Contig901.1.1 vs. uniprot
Match: A0A6H5KDP2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDP2_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 1.550e-14
Identity = 39/69 (56.52%), Postives = 52/69 (75.36%), Query Frame = 1 
Query:  103 VPLVYNDYVKTSINLALENKKLFTVKQQMLFIQNVCIVYSCLAVKRNAGVVGTEAKRAAAAQGYREIAV 309
            +PL +N YV+ ++ L L  K L  +K  +  +QNVCIVY+CLAVKRNAG+V TEAK  AAA+GY++IAV
Sbjct:   12 LPLEFNGYVEGTLELLLGGKGLSQIKL-LKHLQNVCIVYACLAVKRNAGIVSTEAKYKAAAKGYKDIAV 79
[Close]
BLAST of mRNA_P-littoralis_Contig901.1.1 vs. uniprot
Match: A0A6H5JUY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUY9_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 6.820e-14
Identity = 39/69 (56.52%), Postives = 52/69 (75.36%), Query Frame = 1 
Query:  103 VPLVYNDYVKTSINLALENKKLFTVKQQMLFIQNVCIVYSCLAVKRNAGVVGTEAKRAAAAQGYREIAV 309
            +PL +N YV+ ++ L L  K L  +K  +  +QNVCIVY+CLAVKRNAG+V TEAK  AAA+GY++IAV
Sbjct:   12 LPLEFNGYVEGTLELLLGGKGLSQIKL-LKHLQNVCIVYACLAVKRNAGIVSTEAKYKAAAKGYKDIAV 79
[Close]
BLAST of mRNA_P-littoralis_Contig901.1.1 vs. uniprot
Match: A0A6H5JZP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZP4_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 7.490e-14
Identity = 39/69 (56.52%), Postives = 52/69 (75.36%), Query Frame = 1 
Query:  103 VPLVYNDYVKTSINLALENKKLFTVKQQMLFIQNVCIVYSCLAVKRNAGVVGTEAKRAAAAQGYREIAV 309
            +PL +N YV+ ++ L L  K L  +K  +  +QNVCIVY+CLAVKRNAG+V TEAK  AAA+GY++IAV
Sbjct:   12 LPLEFNGYVEGTLELLLGGKGLSQIKL-LKHLQNVCIVYACLAVKRNAGIVSTEAKYKAAAKGYKDIAV 79
[Close]
BLAST of mRNA_P-littoralis_Contig901.1.1 vs. uniprot
Match: A0A6H5K889_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K889_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 9.430e-14
Identity = 35/70 (50.00%), Postives = 50/70 (71.43%), Query Frame = 1 
Query:  100 TVPLVYNDYVKTSINLALENKKLFTVKQQMLFIQNVCIVYSCLAVKRNAGVVGTEAKRAAAAQGYREIAV 309
            ++ L +N Y +T I++  +     T  + +  +QNVCIVY+CLAVKRNAG+V T+AK AAA QGY++IAV
Sbjct:   11 SLSLEFNSYAETVISMLRDRSSGLTDAKLLKHLQNVCIVYACLAVKRNAGIVSTQAKHAAAVQGYKDIAV 80
[Close]
BLAST of mRNA_P-littoralis_Contig901.1.1 vs. uniprot
Match: A0A6H5JF32_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF32_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 1.140e-13
Identity = 36/70 (51.43%), Postives = 51/70 (72.86%), Query Frame = 1 
Query:  100 TVPLVYNDYVKTSINLALENKKLFTVKQQMLFIQNVCIVYSCLAVKRNAGVVGTEAKRAAAAQGYREIAV 309
            ++PL +N Y +T I++  +     T  + +  +QNVCIVY+CLAVKRNAG+V T+AK A AAQGY++IAV
Sbjct:   11 SLPLKFNSYAETVISMLRDRSSGLTDAKLLKPLQNVCIVYACLAVKRNAGMVFTQAKHATAAQGYKDIAV 80
[Close]
BLAST of mRNA_P-littoralis_Contig901.1.1 vs. uniprot
Match: A0A6H5JJR6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJR6_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 4.850e-13
Identity = 35/71 (49.30%), Postives = 52/71 (73.24%), Query Frame = 1 
Query:  100 TVPLVYNDYVKTSINLALENKKLFTVKQQML-FIQNVCIVYSCLAVKRNAGVVGTEAKRAAAAQGYREIAV 309
            ++PL +N Y +T I++  + +       ++L  +QNVCIVY+CLAVKRNAG+V T+AK AA A+GY++IAV
Sbjct:   11 SLPLEFNSYAETVISMLRDKRSSGLTDTKLLKHLQNVCIVYACLAVKRNAGIVSTQAKHAAVAKGYKDIAV 81
[Close]
BLAST of mRNA_P-littoralis_Contig901.1.1 vs. uniprot
Match: D7FPI6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPI6_ECTSI)

HSP 1 Score: 70.1 bits (170), Expect = 1.990e-12
Identity = 35/71 (49.30%), Postives = 52/71 (73.24%), Query Frame = 1 
Query:  100 TVPLVYNDYVKTSINLALENKKLFTVKQQML-FIQNVCIVYSCLAVKRNAGVVGTEAKRAAAAQGYREIAV 309
            ++PL +N Y +T I++  + +       ++L  +QNVCIVY+CL VKRNAG+V T+AK AAAA+GY++IAV
Sbjct:   11 SLPLEFNSYAETVISMLRDRRSSGLTDAKLLKHLQNVCIVYACLTVKRNAGIVSTQAKHAAAAKGYKDIAV 81
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig901.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A6H5L481_9PHAE7.220e-3497.10Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JZ15_9PHAE4.820e-1551.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXZ8_9PHAE1.060e-1451.43Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDP2_9PHAE1.550e-1456.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUY9_9PHAE6.820e-1456.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZP4_9PHAE7.490e-1456.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K889_9PHAE9.430e-1450.00Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JF32_9PHAE1.140e-1351.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJR6_9PHAE4.850e-1349.30Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
D7FPI6_ECTSI1.990e-1249.30Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig901contigP-littoralis_Contig901:5852..6160 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size311
Hectar predicted targeting categoryother localisation
Exons1
Cds size309
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791809.5545363-CDS-P-littoralis_Contig901:5851..61601680791809.5545363-CDS-P-littoralis_Contig901:5851..6160Pylaiella littoralis U1_48CDSP-littoralis_Contig901 5852..6160 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig901.1.1prot_P-littoralis_Contig901.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig901 5852..6160 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig901.1.1

>prot_P-littoralis_Contig901.1.1 ID=prot_P-littoralis_Contig901.1.1|Name=mRNA_P-littoralis_Contig901.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=103bp
MLKRVNSDSADGTQSNPSSTAHHSHGHQRRRSTTVPLVYNDYVKTSINLA
LENKKLFTVKQQMLFIQNVCIVYSCLAVKRNAGVVGTEAKRAAAAQGYRE
IAV
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mRNA from alignment at P-littoralis_Contig901:5852..6160+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig901.1.1 ID=mRNA_P-littoralis_Contig901.1.1|Name=mRNA_P-littoralis_Contig901.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=309bp|location=Sequence derived from alignment at P-littoralis_Contig901:5852..6160+ (Pylaiella littoralis U1_48)
ATGCTCAAACGCGTCAACAGCGATTCAGCAGACGGCACACAGAGCAACCC
GAGCAGTACGGCGCACCACAGCCATGGACATCAACGTAGACGAAGTACTA
CCGTCCCCCTGGTGTATAATGATTACGTCAAGACGTCGATCAACCTCGCG
CTAGAGAACAAGAAATTGTTCACCGTGAAGCAACAGATGCTGTTCATCCA
GAACGTATGCATCGTGTACTCCTGCTTGGCGGTCAAGCGCAATGCTGGCG
TGGTGGGCACCGAAGCGAAGCGCGCTGCTGCTGCCCAAGGCTACAGAGAG
ATCGCTGTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig901:5852..6160+

>mRNA_P-littoralis_Contig901.1.1 ID=mRNA_P-littoralis_Contig901.1.1|Name=mRNA_P-littoralis_Contig901.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=309bp|location=Sequence derived from alignment at P-littoralis_Contig901:5852..6160+ (Pylaiella littoralis U1_48)
ATGCTCAAACGCGTCAACAGCGATTCAGCAGACGGCACACAGAGCAACCC
GAGCAGTACGGCGCACCACAGCCATGGACATCAACGTAGACGAAGTACTA
CCGTCCCCCTGGTGTATAATGATTACGTCAAGACGTCGATCAACCTCGCG
CTAGAGAACAAGAAATTGTTCACCGTGAAGCAACAGATGCTGTTCATCCA
GAACGTATGCATCGTGTACTCCTGCTTGGCGGTCAAGCGCAATGCTGGCG
TGGTGGGCACCGAAGCGAAGCGCGCTGCTGCTGCCCAAGGCTACAGAGAG
ATCGCTGTG
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