mRNA_P-littoralis_Contig900.8.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig900.8.1
Unique NamemRNA_P-littoralis_Contig900.8.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig900.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig900contigP-littoralis_Contig900:8446..9311 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size558
Hectar predicted targeting categoryother localisation
Exons2
Cds size351
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791808.8683789-UTR-P-littoralis_Contig900:8445..84711680791808.8683789-UTR-P-littoralis_Contig900:8445..8471Pylaiella littoralis U1_48UTRP-littoralis_Contig900 8446..8471 +
1680791808.908993-UTR-P-littoralis_Contig900:9130..93111680791808.908993-UTR-P-littoralis_Contig900:9130..9311Pylaiella littoralis U1_48UTRP-littoralis_Contig900 9131..9311 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791808.8802176-CDS-P-littoralis_Contig900:8471..85821680791808.8802176-CDS-P-littoralis_Contig900:8471..8582Pylaiella littoralis U1_48CDSP-littoralis_Contig900 8472..8582 +
1680791808.8930502-CDS-P-littoralis_Contig900:8890..91301680791808.8930502-CDS-P-littoralis_Contig900:8890..9130Pylaiella littoralis U1_48CDSP-littoralis_Contig900 8891..9130 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig900.8.1prot_P-littoralis_Contig900.8.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig900 8472..9130 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig900.8.1

>prot_P-littoralis_Contig900.8.1 ID=prot_P-littoralis_Contig900.8.1|Name=mRNA_P-littoralis_Contig900.8.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=117bp
MPNEDVAAYFMKEVGQTWSPALKTLIAVSLLKESGLPIQVGSSAPRSGTT
KAVAGSRAVYSQACHLVLPFLHGITSHPAWKTPAIVDQHAVVKAAYLLYK
EGGGELNKAQSSGKNS*
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mRNA from alignment at P-littoralis_Contig900:8446..9311+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig900.8.1 ID=mRNA_P-littoralis_Contig900.8.1|Name=mRNA_P-littoralis_Contig900.8.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=866bp|location=Sequence derived from alignment at P-littoralis_Contig900:8446..9311+ (Pylaiella littoralis U1_48)
AGGACATTGCACGCAAGTCCAAGACCATGCCGAATGAGGACGTCGCCGCG
TACTTCATGAAAGAAGTGGGGCAGACGTGGTCTCCGGCGCTCAAGACGTT
GATCGCCGTCAGCCTCCTCAAGGAGTCAGGGCTACCTGTAAGTGCTGGTG
TTGCTCCAGCGGTTTTCACTCAAGCGCCCCCCCGCCAAACGCGTGTCTTT
ATTATTTCAACCAAATGAGTTACCATCGTGCTTAAGAATTATGAACTGGT
CGGCAAGCAGCGGAAGATATGATGCCGTGTGTAGCGAGATGGCGTGTATC
GTTCTTTCATGGCTTTAATGGTACCCCAATCCAGGCGATGCTGGGCCGTT
CCAGCTCGGTACATGTATTTACGGTCATGCGCTCCCCCGGCTATAACCTT
ACCCCTATGCTTGCTATTGTCATTTTGTTTTTCGCACTGCGACAGATCCA
GGTAGGTTCTTCTGCCCCCCGCTCTGGCACCACAAAGGCTGTGGCGGGGT
CCAGGGCTGTTTACAGCCAAGCCTGCCACCTGGTACTGCCGTTCTTGCAT
GGGATTACGTCCCACCCGGCATGGAAGACCCCTGCCATTGTCGATCAACA
TGCTGTCGTAAAGGCAGCATACCTCCTCTACAAGGAGGGCGGTGGCGAGC
TCAACAAAGCTCAATCTTCCGGTAAGAACTCTTAATAACCTTTCAGAGCA
ACATGACCTGCTTTGTGCAGCCATGGATTCCACTTATTCTCACCGCTTGC
TGTGAAGTTTGGTGCTTCCCGTGAAGACGTGTGGCACATCCTCGATAAGG
AGTGTGTAGCAAGGCCTACACGACGAGTAGACGAGCTTTGCTTTCGCCCC
CCCCAGCACACACACG
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Coding sequence (CDS) from alignment at P-littoralis_Contig900:8446..9311+

>mRNA_P-littoralis_Contig900.8.1 ID=mRNA_P-littoralis_Contig900.8.1|Name=mRNA_P-littoralis_Contig900.8.1|organism=Pylaiella littoralis U1_48|type=CDS|length=351bp|location=Sequence derived from alignment at P-littoralis_Contig900:8446..9311+ (Pylaiella littoralis U1_48)
ATGCCGAATGAGGACGTCGCCGCGTACTTCATGAAAGAAGTGGGGCAGAC
GTGGTCTCCGGCGCTCAAGACGTTGATCGCCGTCAGCCTCCTCAAGGAGT
CAGGGCTACCTATCCAGGTAGGTTCTTCTGCCCCCCGCTCTGGCACCACA
AAGGCTGTGGCGGGGTCCAGGGCTGTTTACAGCCAAGCCTGCCACCTGGT
ACTGCCGTTCTTGCATGGGATTACGTCCCACCCGGCATGGAAGACCCCTG
CCATTGTCGATCAACATGCTGTCGTAAAGGCAGCATACCTCCTCTACAAG
GAGGGCGGTGGCGAGCTCAACAAAGCTCAATCTTCCGGTAAGAACTCTTA
A
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