mRNA_P-littoralis_Contig900.21.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig900.21.1
Unique NamemRNA_P-littoralis_Contig900.21.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig900.21.1 vs. uniprot
Match: A0A6H5KHG3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHG3_9PHAE)

HSP 1 Score: 155 bits (393), Expect = 4.640e-43
Identity = 91/184 (49.46%), Postives = 114/184 (61.96%), Query Frame = 1 
Query:  232 MTARPAGAASPDADDSEFFGDPE---GEELEELLGQTPNIAELPPAVAELEEHACSDPATIRAKIATLAAKLAIGAGCNHATPLVTWKEDKAAASTCGLHQANIIAGIRMQDVLDRQTQRGEDVGYCLETRVRNQVYHEAAKDLGCYGAGNQCKAGKCM-GLLGVFAGKGNAAVPTETVRALCK 771
            MTARP GAA    +D+  F DP    GEELE LL  +P      P +A + +HA   P TIR  I   AA+LA  +GC H  PLVTWK+D+ AA+TCG  QA +++    + VLDRQ     D GYCL  RVRNQVY++ + DL C+G GNQC AG CM   L VFAG+    +P+E VRA+CK
Sbjct:    1 MTARPDGAAEEGGEDT-LFDDPVEVVGEELEGLLRLSPPSTSSTPVLAIITQHAIDSPETIRDFIEETAARLAKESGCQHEAPLVTWKQDREAATTCGRLQAGVLS----RKVLDRQMTHDGDPGYCLAKRVRNQVYYDTSIDLDCHGKGNQCSAGTCMKAALQVFAGEARDGIPSEIVRAMCK 179
[Close]
BLAST of mRNA_P-littoralis_Contig900.21.1 vs. uniprot
Match: A0A6H5KG83_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG83_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 5.950e-28
Identity = 70/149 (46.98%), Postives = 95/149 (63.76%), Query Frame = 1 
Query:  328 QTPNIAELPPAVAELEEHACSDPATIRAKIATLAAKLAIGAGCNHATPLVTWKEDKAAASTCGLHQAN--IIAGIRMQDVLDRQTQRGEDVGYCLETRVRNQVYHEAAKDLGCYGAGNQCKAGKCM-GLLGVFAGKGNAAVPTETVRAL 765
            + P+++    AVA L+ HA   P TI + I   A +LA G  C+H  P V+W+ED +  S CGLHQ+   ++A +R+QDV  R     +D GYC+  RVRNQ Y++ AKDLGC+G GNQ KAG+CM     VFAG GN  +PTE V+A+
Sbjct:   35 EPPSLSSEDTAVAILQ-HARLHPETIGSFIQKKAEELAEGV-CDHHQPPVSWQEDPSTTS-CGLHQSASAVLAAVRLQDVFTRYK---DDPGYCVAKRVRNQGYYDTAKDLGCFGRGNQLKAGECMCAATKVFAGDGNDGLPTEVVKAM 177
[Close]
BLAST of mRNA_P-littoralis_Contig900.21.1 vs. uniprot
Match: A0A6H5KC65_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC65_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 1.050e-18
Identity = 53/110 (48.18%), Postives = 72/110 (65.45%), Query Frame = 1 
Query:  229 SMTARPAGAASPDADDSEFFGDPE-GEELEELLGQTPNIAELPPAVAELEEHACSDPATIRAKIATLAAKLAIGAGCNHATPLVTWKEDKAAASTCGLHQANIIAGIRMQ 555
            SMTAR  GAA P+ +    F DP  GEE+E L+G  P++++    +A + +HA   P T+RA I   A  LAIGAGC H+ PLVTWK+D A+A TCG HQA++I  + +Q
Sbjct:   53 SMTARSRGAA-PEGEPDPIFDDPVVGEEIEGLMGDPPSVSD-DEELAAVRKHAIESPETVRAFIKERARSLAIGAGCPHSLPLVTWKDDPASAVTCGKHQAHLIGNVDLQ 160
[Close]
BLAST of mRNA_P-littoralis_Contig900.21.1 vs. uniprot
Match: A0A6H5L174_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L174_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 1.110e-18
Identity = 53/110 (48.18%), Postives = 72/110 (65.45%), Query Frame = 1 
Query:  229 SMTARPAGAASPDADDSEFFGDPE-GEELEELLGQTPNIAELPPAVAELEEHACSDPATIRAKIATLAAKLAIGAGCNHATPLVTWKEDKAAASTCGLHQANIIAGIRMQ 555
            SMTAR  GAA P+ +    F DP  GEE+E L+G  P++++    +A + +HA   P T+RA I   A  LAIGAGC H+ PLVTWK+D A+A TCG HQA++I  + +Q
Sbjct:   57 SMTARSRGAA-PEGEPDPIFDDPVVGEEIEGLMGDPPSVSD-DEELAAVRKHAIESPETVRAFIKERARSLAIGAGCPHSLPLVTWKDDPASAVTCGKHQAHLIGNVDLQ 164
[Close]
BLAST of mRNA_P-littoralis_Contig900.21.1 vs. uniprot
Match: A0A6H5KC02_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC02_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 4.780e-18
Identity = 51/110 (46.36%), Postives = 71/110 (64.55%), Query Frame = 1 
Query:  229 SMTARPAGAASPDADDSEFFGDPE-GEELEELLGQTPNIAELPPAVAELEEHACSDPATIRAKIATLAAKLAIGAGCNHATPLVTWKEDKAAASTCGLHQANIIAGIRMQ 555
            SMTAR  GAA P+ +    F DP  GEE+E L+G  P++++    +A + +HA   P T+RA I   A  +AIGAGC H+ PLVTWK+D A+A TCG HQA+++    +Q
Sbjct:   10 SMTARSRGAA-PEGEPDPIFDDPVVGEEIEGLMGDPPSVSD-DEELAAVRKHAIESPETVRAFIKERARSVAIGAGCPHSLPLVTWKDDPASAVTCGKHQAHLVGNADLQ 117
[Close]
BLAST of mRNA_P-littoralis_Contig900.21.1 vs. uniprot
Match: A0A6H5KKJ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKJ8_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 2.600e-17
Identity = 42/77 (54.55%), Postives = 53/77 (68.83%), Query Frame = 1 
Query:  547 RMQDVLDRQTQRGEDVGYCLETRVRNQVYHEAAKDLGCYGAGNQCKAGKCM-GLLGVFAGKGNAAVPTETVRALCKF 774
            R QDV  R     +D GYC+  RVRNQVY++ AKDLGC+G GNQ KAG+CM     VFAG GN  +PTE V+A+ ++
Sbjct:   16 RQQDVCTRYK---DDPGYCVAKRVRNQVYYDTAKDLGCFGRGNQLKAGECMRAATKVFAGDGNDGLPTEVVKAMLQY 89
[Close]
BLAST of mRNA_P-littoralis_Contig900.21.1 vs. uniprot
Match: A0A6H5KMD0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMD0_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 8.280e-13
Identity = 36/78 (46.15%), Postives = 52/78 (66.67%), Query Frame = 1 
Query:  322 LGQTPNIAELPPAVAELEEHACSDPATIRAKIATLAAKLAIGAGCNHATPLVTWKEDKAAASTCGLHQANIIAGIRMQ 555
            +G  P++++    +A + +HA   P T+RA I   A  LAIGAGC H+ PLVTWK+D A+A TCG HQA++I  + +Q
Sbjct:    1 MGDPPSVSD-DEELAAVRKHAIESPETVRAFIKERARSLAIGAGCPHSLPLVTWKDDPASAVTCGKHQAHLIGNVDLQ 77
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig900.21.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5KHG3_9PHAE4.640e-4349.46Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KG83_9PHAE5.950e-2846.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KC65_9PHAE1.050e-1848.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L174_9PHAE1.110e-1848.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KC02_9PHAE4.780e-1846.36Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KKJ8_9PHAE2.600e-1754.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KMD0_9PHAE8.280e-1346.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig900contigP-littoralis_Contig900:49718..51573 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size862
Hectar predicted targeting categoryother localisation
Exons2
Cds size747
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791809.1217196-UTR-P-littoralis_Contig900:49717..497471680791809.1217196-UTR-P-littoralis_Contig900:49717..49747Pylaiella littoralis U1_48UTRP-littoralis_Contig900 49718..49747 +
1680791809.1622298-UTR-P-littoralis_Contig900:51488..515731680791809.1622298-UTR-P-littoralis_Contig900:51488..51573Pylaiella littoralis U1_48UTRP-littoralis_Contig900 51489..51573 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791809.135034-CDS-P-littoralis_Contig900:49747..502721680791809.135034-CDS-P-littoralis_Contig900:49747..50272Pylaiella littoralis U1_48CDSP-littoralis_Contig900 49748..50272 +
1680791809.1483812-CDS-P-littoralis_Contig900:51266..514881680791809.1483812-CDS-P-littoralis_Contig900:51266..51488Pylaiella littoralis U1_48CDSP-littoralis_Contig900 51267..51488 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig900.21.1prot_P-littoralis_Contig900.21.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig900 49748..51488 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig900.21.1

>prot_P-littoralis_Contig900.21.1 ID=prot_P-littoralis_Contig900.21.1|Name=mRNA_P-littoralis_Contig900.21.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=249bp
MSTCGSPDAKRPRTDIGGPVGGGDKLKVKASSVPNSPQQIQQQQQQQQQK
PKEDEGNGTGAVAAGPSMTARPAGAASPDADDSEFFGDPEGEELEELLGQ
TPNIAELPPAVAELEEHACSDPATIRAKIATLAAKLAIGAGCNHATPLVT
WKEDKAAASTCGLHQANIIAGIRMQDVLDRQTQRGEDVGYCLETRVRNQV
YHEAAKDLGCYGAGNQCKAGKCMGLLGVFAGKGNAAVPTETVRALCKF*
back to top

mRNA from alignment at P-littoralis_Contig900:49718..51573+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig900.21.1 ID=mRNA_P-littoralis_Contig900.21.1|Name=mRNA_P-littoralis_Contig900.21.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1856bp|location=Sequence derived from alignment at P-littoralis_Contig900:49718..51573+ (Pylaiella littoralis U1_48)
CCAACCAAACAACCGCGGAGAGGCTTGAGGATGAGTACCTGCGGTAGCCC
CGACGCCAAGCGTCCCCGCACAGACATCGGCGGTCCTGTTGGGGGAGGTG
ACAAATTGAAGGTGAAAGCCAGTAGTGTGCCAAATTCGCCGCAACAAATT
CAGCAGCAGCAGCAGCAGCAGCAGCAAAAGCCCAAGGAGGACGAAGGTAA
CGGCACCGGCGCTGTCGCAGCAGGGCCTTCGATGACTGCCAGGCCCGCTG
GGGCCGCCAGTCCTGATGCTGATGACTCCGAGTTCTTCGGCGACCCCGAA
GGCGAGGAGCTCGAGGAGTTGCTGGGGCAGACGCCAAACATCGCGGAGCT
GCCTCCTGCCGTGGCGGAGCTTGAAGAGCATGCCTGTAGCGACCCGGCCA
CGATCCGGGCTAAGATCGCGACACTGGCAGCGAAGCTGGCGATTGGGGCG
GGATGCAACCACGCTACACCTCTTGTAACATGGAAGGAGGATAAGGCCGC
TGCGAGTACTTGTGGGCTTCACCAGGCTAACATCATAGCCGGGATACGCA
TGCAGGTTGGTCAAGAAAAAATTAAAATTATGATCCCCGAACAACAGCAG
CAGCAGAATTTCTTAGTAAACATACCGTTCAATGTATAAATGTATAGTGG
CACATGAACATGAGCATCACGTGTCGTCTACACTGAGACTTCCTTGTAGT
ACATAAACATGTACTGATGTTTGCATGTATATTTATATATCGATATATAT
GTGTGCTGTGTGTGCATTTATCTCTCTATGTTTACAGCACTATGGTATTG
TGGTATTCTTGTTGTATGTTCATTTATGTATGGATCTATGTATGTGTTGT
TTGTGCATTTATCACGTTGTGCCCGTATTTATATTTATCAAATTGTTTAC
AGCAGTATGCACATGGTGTTGTTGTGTCTTCATTTATGTATGGGTCTATG
TATTTTTGTGTGTGTATTTATCACGTTGTCCATTTATCAATAGTAGTACA
GGTATGTATGTACTTCGTATGCATGGCTATACTGCTGTATACTCCTTGTA
TACGTATATGTACGGTTCTACTGCTGTGTGCATATTATACACGCAGTACA
CTTCGTGTACAATGTACTGCTGTATGTTTTGGCCGGACTTGAAAAAGCGG
TGGCGGCAGTGGGAGTACTGCTATAGTACGGCGGTGTCCCAGGTTGCCTG
TCGTTTGCACTATCATAGAGTAAAAATACATCAGCAAAAGAGCATAAACG
TCGAAGTGATGTCTGCTTTTAGTGTATGTAGACAAACTACTCTAGTTGTA
TCCAATTGATATATACCGACAACGAGAGGACATACCGCCTGTACAGCGAT
CCCCCCCCCCCATGTCGTCTCGTTGGTAAAGCAGTGCACAGTCGCCGTTA
GGGTTACTTGTAGCCTCGCATCCAACTGAAAAAAAGTAGTTTGTCCCATG
GTGTTGTGTACTACACACGTGCATCAGGGTTAGTTATCGTCCTCACAAGC
GCACAATTTTCCTATTCCACTGCCCTCCCACGCGCGATTCCTTGAACAGG
ATGTTCTCGACCGGCAGACGCAAAGGGGTGAAGATGTTGGGTATTGCCTC
GAGACGCGTGTGCGCAACCAGGTCTATCACGAGGCCGCAAAGGATCTCGG
GTGCTATGGAGCCGGTAACCAGTGCAAGGCTGGGAAGTGCATGGGCCTTC
TTGGCGTTTTCGCCGGCAAGGGCAATGCCGCCGTCCCGACCGAGACTGTT
CGGGCGCTCTGCAAATTCTAGGTTTTTTTAATCAAGTGCTCGGTCACATA
TGTTTTAGTTCAAGAAATCGTAGGTGTCGTTATCCACGGAGAGCGCGGAT
CATGGC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig900:49718..51573+

>mRNA_P-littoralis_Contig900.21.1 ID=mRNA_P-littoralis_Contig900.21.1|Name=mRNA_P-littoralis_Contig900.21.1|organism=Pylaiella littoralis U1_48|type=CDS|length=747bp|location=Sequence derived from alignment at P-littoralis_Contig900:49718..51573+ (Pylaiella littoralis U1_48)
ATGAGTACCTGCGGTAGCCCCGACGCCAAGCGTCCCCGCACAGACATCGG
CGGTCCTGTTGGGGGAGGTGACAAATTGAAGGTGAAAGCCAGTAGTGTGC
CAAATTCGCCGCAACAAATTCAGCAGCAGCAGCAGCAGCAGCAGCAAAAG
CCCAAGGAGGACGAAGGTAACGGCACCGGCGCTGTCGCAGCAGGGCCTTC
GATGACTGCCAGGCCCGCTGGGGCCGCCAGTCCTGATGCTGATGACTCCG
AGTTCTTCGGCGACCCCGAAGGCGAGGAGCTCGAGGAGTTGCTGGGGCAG
ACGCCAAACATCGCGGAGCTGCCTCCTGCCGTGGCGGAGCTTGAAGAGCA
TGCCTGTAGCGACCCGGCCACGATCCGGGCTAAGATCGCGACACTGGCAG
CGAAGCTGGCGATTGGGGCGGGATGCAACCACGCTACACCTCTTGTAACA
TGGAAGGAGGATAAGGCCGCTGCGAGTACTTGTGGGCTTCACCAGGCTAA
CATCATAGCCGGGATACGCATGCAGGATGTTCTCGACCGGCAGACGCAAA
GGGGTGAAGATGTTGGGTATTGCCTCGAGACGCGTGTGCGCAACCAGGTC
TATCACGAGGCCGCAAAGGATCTCGGGTGCTATGGAGCCGGTAACCAGTG
CAAGGCTGGGAAGTGCATGGGCCTTCTTGGCGTTTTCGCCGGCAAGGGCA
ATGCCGCCGTCCCGACCGAGACTGTTCGGGCGCTCTGCAAATTCTAG
back to top