mRNA_P-littoralis_Contig90.147.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig90.147.1
Unique NamemRNA_P-littoralis_Contig90.147.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig90.147.1 vs. uniprot
Match: A0A6H5KAN7_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAN7_9PHAE)

HSP 1 Score: 119 bits (298), Expect = 1.070e-27
Identity = 77/208 (37.02%), Postives = 110/208 (52.88%), Query Frame = 1 
Query:    1 MVGHCSHSVCNNDEFKKVQEELEEMCKLLELIRRNDTRWASLHAMLQRVLRLYRALVEYF-NRCGSDRALFPTEWQAVQQVVSVLDDAAATAAQVQGGRHGFVGQSINDFFVLHHSVSAPDQDIRCLD-PWDGP---KTSVTTSQLQPLTRTLLTVMAEDMSERELGSATLSPETINLVLDPRFKSCCSSVCLNGGAALQARVAVDVE 609
            +VG  SHS  NNDE K +Q   EE   + ELIRRNDTRWAS HAM+ R+L+L +A+VEYF +   ++R L   EW    +V S+LD  A    ++QG     + Q++ +   +    S     IR  D P++     K  +    L   T  +  V+   M ++ELG+A +  E I  +LDPR K C     +NG A L+A    DV+
Sbjct:   84 VVGVFSHSAVNNDELKDIQRLQEEFQIIYELIRRNDTRWASQHAMMVRLLKLKKAIVEYFRDNENNNRKLSSREWTVTNEVCSLLDVVAEVTVKIQGATDTHISQTMFNMREIREIFSGDVYKIRVPDQPYNDDSVLKEKIQVDDLMTETCKVREVVLSRMEKKELGAARMPLERICALLDPRRKDCSDEHLVNGSADLKASAIADVK 291
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BLAST of mRNA_P-littoralis_Contig90.147.1 vs. uniprot
Match: A0A6H5KJ52_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ52_9PHAE)

HSP 1 Score: 119 bits (298), Expect = 2.500e-27
Identity = 77/208 (37.02%), Postives = 110/208 (52.88%), Query Frame = 1 
Query:    1 MVGHCSHSVCNNDEFKKVQEELEEMCKLLELIRRNDTRWASLHAMLQRVLRLYRALVEYF-NRCGSDRALFPTEWQAVQQVVSVLDDAAATAAQVQGGRHGFVGQSINDFFVLHHSVSAPDQDIRCLD-PWDGP---KTSVTTSQLQPLTRTLLTVMAEDMSERELGSATLSPETINLVLDPRFKSCCSSVCLNGGAALQARVAVDVE 609
            +VG  SHS  NNDE K +Q   EE   + ELIRRNDTRWAS HAM+ R+L+L +A+VEYF +   ++R L   EW    +V S+LD  A    ++QG     + Q++ +   +    S     IR  D P++     K  +    L   T  +  V+   M ++ELG+A +  E I  +LDPR K C     +NG A L+A    DV+
Sbjct:  412 VVGVFSHSAVNNDELKDIQRLQEEFQIIYELIRRNDTRWASQHAMMVRLLKLKKAIVEYFRDNENNNRKLSSREWTVTNEVCSLLDVVAEVTVKIQGATDTHISQTMFNMREIREIFSGDVYKIRVPDQPYNDDSVLKEKIQVDDLMTETCKVREVVLSRMEKKELGAARMPLERICALLDPRRKDCSDEHLVNGSADLKASAIADVK 619
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BLAST of mRNA_P-littoralis_Contig90.147.1 vs. uniprot
Match: D7G031_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G031_ECTSI)

HSP 1 Score: 63.5 bits (153), Expect = 4.250e-8
Identity = 44/131 (33.59%), Postives = 60/131 (45.80%), Query Frame = 1 
Query:  259 AAATAAQVQGGRHGFVGQSINDFFVLHHSVSAPDQDIR--------------------CLDPWDGPKTSVTTSQLQPLTRTLLTVMAEDMSERELGSATLSPETINLVLDPRFKSCCSSVCLNGGAALQAR 591
            A A A   +  R  F+ +SI     LH S   P QDIR                           P  S   ++L P  + LL  +AE M E  LG A    E ++++LDPRFK CC+S C++GG+AL+ R
Sbjct:  550 AGAAARDKKKPRGIFLAESIELHANLHCSFIYPLQDIRGDALATAATGEGVAAAPAMVAAGAGAAPFCSKRVAELTPEAQALLEAVAEGMEESGLGRAREDTEAVSMLLDPRFKQCCASTCVDGGSALKLR 680
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig90.147.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KAN7_9PHAE1.070e-2737.02Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KJ52_9PHAE2.500e-2737.02Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
D7G031_ECTSI4.250e-833.59Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig90contigP-littoralis_Contig90:582515..583537 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size663
Hectar predicted targeting categoryother localisation
Exons2
Cds size663
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791808.6915565-CDS-P-littoralis_Contig90:582514..5830641680791808.6915565-CDS-P-littoralis_Contig90:582514..583064Pylaiella littoralis U1_48CDSP-littoralis_Contig90 582515..583064 -
1680791808.7165184-CDS-P-littoralis_Contig90:583424..5835371680791808.7165184-CDS-P-littoralis_Contig90:583424..583537Pylaiella littoralis U1_48CDSP-littoralis_Contig90 583425..583537 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig90.147.1prot_P-littoralis_Contig90.147.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig90 582515..583537 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig90.147.1

>prot_P-littoralis_Contig90.147.1 ID=prot_P-littoralis_Contig90.147.1|Name=mRNA_P-littoralis_Contig90.147.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=221bp
MVGHCSHSVCNNDEFKKVQEELEEMCKLLELIRRNDTRWASLHAMLQRVL
RLYRALVEYFNRCGSDRALFPTEWQAVQQVVSVLDDAAATAAQVQGGRHG
FVGQSINDFFVLHHSVSAPDQDIRCLDPWDGPKTSVTTSQLQPLTRTLLT
VMAEDMSERELGSATLSPETINLVLDPRFKSCCSSVCLNGGAALQARVAV
DVEGAFDYFLGYTKAQSEEQG
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mRNA from alignment at P-littoralis_Contig90:582515..583537-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig90.147.1 ID=mRNA_P-littoralis_Contig90.147.1|Name=mRNA_P-littoralis_Contig90.147.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1023bp|location=Sequence derived from alignment at P-littoralis_Contig90:582515..583537- (Pylaiella littoralis U1_48)
ATGGTTGGGCACTGCAGCCACAGTGTGTGCAACAACGACGAGTTCAAGAA
AGTGCAAGAAGAGCTTGAAGAGATGTGCAAGCTCTTGGAGCTCATCCGTC
GGAACGACACAAGGTGAGAGGTGTGCGCGAATGATGTGCGCAGGTTGTAT
TCGGGATTTATTTTGTGTGTTCGTGTCGTCTCGGACAACAGAAAGGTCGA
GGCAGGCGCCGCCGCCCGCCAAGTATGCAGCAACTTGCTTTCGCTTATGG
ATTATTACAAAATCGCCGTGAGTTGCCACGCCCTAAAGAAAAAATTAAAA
AAATTGTAAAATGTCGTTCCTGTGGTGAACGAAGTTGGGAGCAAACGTTC
CGGGTCACTCGTTTAGACACGCAAACTGACGTGCCCCTTCCGCCCCCTCC
CCCGAAGCAAGCACTAACTCGTTTGCAAACGAAATTGCCTCCCATCACCC
GCCACGTTTTGAACGGTTCATAGGTGGGCTTCGCTGCATGCAATGCTCCA
GCGCGTGCTCAGGCTCTACAGAGCTCTCGTCGAGTACTTCAACCGGTGTG
GGAGCGACCGTGCTTTGTTCCCGACGGAGTGGCAAGCAGTGCAGCAGGTG
GTGAGCGTCCTCGACGACGCCGCTGCCACGGCGGCCCAGGTCCAGGGGGG
TCGTCATGGGTTTGTCGGCCAGTCCATCAACGACTTCTTCGTCCTGCACC
ACTCGGTCAGCGCCCCAGACCAGGACATTCGATGCCTGGATCCCTGGGAC
GGCCCCAAAACATCAGTCACCACGAGCCAGCTTCAACCGCTCACGCGGAC
ACTACTGACGGTAATGGCGGAGGACATGTCCGAGAGGGAGCTGGGGTCTG
CGACGCTGTCGCCCGAGACGATCAACCTGGTGCTCGATCCCCGCTTCAAG
TCCTGCTGCTCGAGCGTGTGCTTGAACGGGGGCGCAGCACTTCAAGCGCG
AGTGGCCGTCGACGTCGAGGGGGCCTTCGACTACTTCCTTGGGTACACGA
AGGCGCAGAGTGAGGAACAGGGT
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Coding sequence (CDS) from alignment at P-littoralis_Contig90:582515..583537-

>mRNA_P-littoralis_Contig90.147.1 ID=mRNA_P-littoralis_Contig90.147.1|Name=mRNA_P-littoralis_Contig90.147.1|organism=Pylaiella littoralis U1_48|type=CDS|length=663bp|location=Sequence derived from alignment at P-littoralis_Contig90:582515..583537- (Pylaiella littoralis U1_48)
ATGGTTGGGCACTGCAGCCACAGTGTGTGCAACAACGACGAGTTCAAGAA
AGTGCAAGAAGAGCTTGAAGAGATGTGCAAGCTCTTGGAGCTCATCCGTC
GGAACGACACAAGGTGGGCTTCGCTGCATGCAATGCTCCAGCGCGTGCTC
AGGCTCTACAGAGCTCTCGTCGAGTACTTCAACCGGTGTGGGAGCGACCG
TGCTTTGTTCCCGACGGAGTGGCAAGCAGTGCAGCAGGTGGTGAGCGTCC
TCGACGACGCCGCTGCCACGGCGGCCCAGGTCCAGGGGGGTCGTCATGGG
TTTGTCGGCCAGTCCATCAACGACTTCTTCGTCCTGCACCACTCGGTCAG
CGCCCCAGACCAGGACATTCGATGCCTGGATCCCTGGGACGGCCCCAAAA
CATCAGTCACCACGAGCCAGCTTCAACCGCTCACGCGGACACTACTGACG
GTAATGGCGGAGGACATGTCCGAGAGGGAGCTGGGGTCTGCGACGCTGTC
GCCCGAGACGATCAACCTGGTGCTCGATCCCCGCTTCAAGTCCTGCTGCT
CGAGCGTGTGCTTGAACGGGGGCGCAGCACTTCAAGCGCGAGTGGCCGTC
GACGTCGAGGGGGCCTTCGACTACTTCCTTGGGTACACGAAGGCGCAGAG
TGAGGAACAGGGT
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