mRNA_P-littoralis_Contig90.130.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig90.130.1
Unique NamemRNA_P-littoralis_Contig90.130.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig90.130.1 vs. uniprot
Match: A0A6H5KWQ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWQ8_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 2.440e-7
Identity = 73/150 (48.67%), Postives = 81/150 (54.00%), Query Frame = 1 
Query:   10 SNNSKTVTRRSFTPPVS-PAFSDGGRSGSRERMLTAETAANEPPIFVTVAQFCTLGVAEEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVTPAILPSLFPQASNNISVGCAAVVSEGVRMVLTSVDHEGGAVAT 456
            S  S  +TR S TPP   P FS  G + S E + TA  A +EPP+F TVAQFCTLGVAEE                  XXXXXXXXXXXXXXXXXXX           A+LP LFP      S      VSEGV+MVL+S   EG   AT
Sbjct:  399 SGGSGALTRGSSTPPSPRPGFSGAGGATS-EDLDTAGAAVSEPPLFATVAQFCTLGVAEESGAAQAAATGETDAAGAPXXXXXXXXXXXXXXXXXXX-----------AMLPLLFPXXXXXXSA-----VSEGVKMVLSSAGREGEGGAT 531
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BLAST of mRNA_P-littoralis_Contig90.130.1 vs. uniprot
Match: D8LHH6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHH6_ECTSI)

HSP 1 Score: 55.1 bits (131), Expect = 7.200e-6
Identity = 28/59 (47.46%), Postives = 37/59 (62.71%), Query Frame = 1 
Query:   10 SNNSKTVTRRSFTPPVSPAFSDGGRSGSRERMLTAETAANEPPIFVTVAQFCTLGVAEE 186
            S  S  + RR  TPP + +      + + E +  A+ AA+EPP+F TVAQFCTLGVAEE
Sbjct: 2114 SGGSGALARRCSTPPSARSGFSAAGAATSEDLNAADAAASEPPLFATVAQFCTLGVAEE 2172
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig90.130.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KWQ8_9PHAE2.440e-748.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LHH6_ECTSI7.200e-647.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig90contigP-littoralis_Contig90:483145..483602 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LHH6
Model size460
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.18e-06
EggNOG OGs28MMI@1|root,2QU5A@2759|Eukaryota
Cds size456
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791807.4374533-CDS-P-littoralis_Contig90:483146..4836021680791807.4374533-CDS-P-littoralis_Contig90:483146..483602Pylaiella littoralis U1_48CDSP-littoralis_Contig90 483147..483602 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig90.130.1prot_P-littoralis_Contig90.130.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig90 483147..483602 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig90.130.1

>prot_P-littoralis_Contig90.130.1 ID=prot_P-littoralis_Contig90.130.1|Name=mRNA_P-littoralis_Contig90.130.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=152bp
NSNSNNSKTVTRRSFTPPVSPAFSDGGRSGSRERMLTAETAANEPPIFVT
VAQFCTLGVAEEGGALLAASAGAAAAKSAVTDVSGGDDAQGAGGQQEEVI
AVGGGGAVTPAILPSLFPQASNNISVGCAAVVSEGVRMVLTSVDHEGGAV
AT
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mRNA from alignment at P-littoralis_Contig90:483145..483602-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig90.130.1 ID=mRNA_P-littoralis_Contig90.130.1|Name=mRNA_P-littoralis_Contig90.130.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=458bp|location=Sequence derived from alignment at P-littoralis_Contig90:483145..483602- (Pylaiella littoralis U1_48)
AACAGCAACAGCAACAACAGCAAGACCGTAACGCGGAGGTCCTTCACGCC
TCCGGTAAGTCCGGCCTTCTCCGACGGCGGCCGGAGCGGCAGCAGAGAGA
GGATGTTGACCGCGGAAACGGCAGCGAATGAGCCACCGATTTTCGTAACC
GTCGCTCAGTTCTGCACGCTGGGGGTGGCAGAGGAGGGCGGCGCCCTGCT
CGCCGCATCTGCAGGAGCAGCGGCGGCAAAGTCCGCGGTGACTGACGTCA
GTGGCGGAGACGATGCCCAAGGGGCTGGTGGGCAGCAGGAGGAAGTGATC
GCCGTGGGTGGAGGGGGCGCGGTAACTCCGGCTATCCTGCCGTCTTTGTT
CCCGCAGGCGAGCAACAACATAAGCGTTGGCTGCGCAGCAGTGGTGTCGG
AAGGGGTTAGGATGGTGCTGACCAGCGTCGATCATGAAGGCGGAGCGGTT
GCAACGGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig90:483145..483602-

>mRNA_P-littoralis_Contig90.130.1 ID=mRNA_P-littoralis_Contig90.130.1|Name=mRNA_P-littoralis_Contig90.130.1|organism=Pylaiella littoralis U1_48|type=CDS|length=456bp|location=Sequence derived from alignment at P-littoralis_Contig90:483145..483602- (Pylaiella littoralis U1_48)
AACAGCAACAGCAACAACAGCAAGACCGTAACGCGGAGGTCCTTCACGCC
TCCGGTAAGTCCGGCCTTCTCCGACGGCGGCCGGAGCGGCAGCAGAGAGA
GGATGTTGACCGCGGAAACGGCAGCGAATGAGCCACCGATTTTCGTAACC
GTCGCTCAGTTCTGCACGCTGGGGGTGGCAGAGGAGGGCGGCGCCCTGCT
CGCCGCATCTGCAGGAGCAGCGGCGGCAAAGTCCGCGGTGACTGACGTCA
GTGGCGGAGACGATGCCCAAGGGGCTGGTGGGCAGCAGGAGGAAGTGATC
GCCGTGGGTGGAGGGGGCGCGGTAACTCCGGCTATCCTGCCGTCTTTGTT
CCCGCAGGCGAGCAACAACATAAGCGTTGGCTGCGCAGCAGTGGTGTCGG
AAGGGGTTAGGATGGTGCTGACCAGCGTCGATCATGAAGGCGGAGCGGTT
GCAACG
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