mRNA_P-littoralis_Contig9.76.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig9.76.1
Unique NamemRNA_P-littoralis_Contig9.76.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig9.76.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig9contigP-littoralis_Contig9:318426..319048 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size623
Hectar predicted targeting categorymitochondrion
Exons1
Cds size315
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791787.0718126-UTR-P-littoralis_Contig9:318425..3186851680791787.0718126-UTR-P-littoralis_Contig9:318425..318685Pylaiella littoralis U1_48UTRP-littoralis_Contig9 318426..318685 -
1680791787.0932488-UTR-P-littoralis_Contig9:319000..3190481680791787.0932488-UTR-P-littoralis_Contig9:319000..319048Pylaiella littoralis U1_48UTRP-littoralis_Contig9 319001..319048 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791787.0821867-CDS-P-littoralis_Contig9:318685..3190001680791787.0821867-CDS-P-littoralis_Contig9:318685..319000Pylaiella littoralis U1_48CDSP-littoralis_Contig9 318686..319000 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig9.76.1prot_P-littoralis_Contig9.76.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig9 318686..319000 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig9.76.1

>prot_P-littoralis_Contig9.76.1 ID=prot_P-littoralis_Contig9.76.1|Name=mRNA_P-littoralis_Contig9.76.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=105bp
MRKRICRWTHGRVIFCPPSGGKKGNTGHKNSQSCLVARAQTVVCFKTPCV
QLEKSNDLETPTRMFTLDFSDGSNFSTLVAASKYARSTTEVNTTQLKVET
FNQV*
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mRNA from alignment at P-littoralis_Contig9:318426..319048-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig9.76.1 ID=mRNA_P-littoralis_Contig9.76.1|Name=mRNA_P-littoralis_Contig9.76.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=623bp|location=Sequence derived from alignment at P-littoralis_Contig9:318426..319048- (Pylaiella littoralis U1_48)
GCATGTTCATTCTCTAGTTCGAACCGTCATGCCTCGTCCGTGTGTAATAT
GCGCAAACGAATCTGTCGCTGGACGCACGGCAGGGTTATTTTTTGCCCGC
CAAGCGGTGGGAAAAAAGGAAACACCGGGCATAAAAATAGTCAATCATGC
CTCGTGGCGCGAGCGCAGACCGTCGTGTGCTTCAAAACCCCATGTGTACA
ACTCGAAAAATCCAACGACCTAGAGACACCAACCCGCATGTTCACGCTGG
ATTTCAGCGATGGTTCTAATTTTTCAACCTTAGTTGCAGCTTCCAAATAT
GCACGGTCAACGACTGAAGTAAATACCACACAGCTGAAGGTAGAAACCTT
CAACCAAGTTTGATGACGCAGAATCCATGTGCTCGTGCGCACAACTACCT
TGCCTCACGCTCTCTCTTCTCGGAAAGACGACGGAGACGGGGCGGGGACG
AATGACACTGGGAATGAATCCGCAAAAAAAAAAGAGAGCAAAATCTCGGA
CCACCTTCAGACGCGCAAAATGGAGGCTAGATTGCGCAGGAGAAATGACG
AAAGCCACAGCAGTTCTTGCGAATAAAAAAAATACTTCGTACAAAGAAAC
ACAAGATATATTTGACTAAAAAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig9:318426..319048-

>mRNA_P-littoralis_Contig9.76.1 ID=mRNA_P-littoralis_Contig9.76.1|Name=mRNA_P-littoralis_Contig9.76.1|organism=Pylaiella littoralis U1_48|type=CDS|length=315bp|location=Sequence derived from alignment at P-littoralis_Contig9:318426..319048- (Pylaiella littoralis U1_48)
ATGCGCAAACGAATCTGTCGCTGGACGCACGGCAGGGTTATTTTTTGCCC
GCCAAGCGGTGGGAAAAAAGGAAACACCGGGCATAAAAATAGTCAATCAT
GCCTCGTGGCGCGAGCGCAGACCGTCGTGTGCTTCAAAACCCCATGTGTA
CAACTCGAAAAATCCAACGACCTAGAGACACCAACCCGCATGTTCACGCT
GGATTTCAGCGATGGTTCTAATTTTTCAACCTTAGTTGCAGCTTCCAAAT
ATGCACGGTCAACGACTGAAGTAAATACCACACAGCTGAAGGTAGAAACC
TTCAACCAAGTTTGA
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