mRNA_P-littoralis_Contig899.4.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig899.4.1
Unique NamemRNA_P-littoralis_Contig899.4.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig899.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig899contigP-littoralis_Contig899:20532..21363 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size832
Hectar predicted targeting categoryother localisation
Exons1
Cds size465
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791786.6100965-UTR-P-littoralis_Contig899:20531..208781680791786.6100965-UTR-P-littoralis_Contig899:20531..20878Pylaiella littoralis U1_48UTRP-littoralis_Contig899 20532..20878 -
1680791786.635139-UTR-P-littoralis_Contig899:21343..213631680791786.635139-UTR-P-littoralis_Contig899:21343..21363Pylaiella littoralis U1_48UTRP-littoralis_Contig899 21344..21363 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791786.6218576-CDS-P-littoralis_Contig899:20878..213431680791786.6218576-CDS-P-littoralis_Contig899:20878..21343Pylaiella littoralis U1_48CDSP-littoralis_Contig899 20879..21343 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig899.4.1prot_P-littoralis_Contig899.4.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig899 20879..21343 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig899.4.1

>prot_P-littoralis_Contig899.4.1 ID=prot_P-littoralis_Contig899.4.1|Name=mRNA_P-littoralis_Contig899.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=155bp
MIQWGMQNQFKTNDIMTTNNAQVHQELKTGQIQLTTGLLELNTGLQTVAQ
GFTSRFVSLEDSMEDLRKELASNQSSLSDLRKETTSNQFKRGKRSQFLPY
LPVLFDGETGECGWVPTGFTDSSGTYLGRVHGAFLQHRVSCENQRGRDRI
FFHG*
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mRNA from alignment at P-littoralis_Contig899:20532..21363-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig899.4.1 ID=mRNA_P-littoralis_Contig899.4.1|Name=mRNA_P-littoralis_Contig899.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=832bp|location=Sequence derived from alignment at P-littoralis_Contig899:20532..21363- (Pylaiella littoralis U1_48)
CCAATGAGCAACCGGGCACAATGATACAGTGGGGGATGCAAAACCAGTTC
AAGACCAACGACATCATGACGACCAACAACGCCCAGGTGCACCAGGAATT
GAAGACCGGTCAAATCCAGCTGACCACCGGTCTTCTCGAGTTGAACACCG
GTTTACAAACTGTGGCCCAAGGCTTCACTTCGAGGTTCGTATCTCTAGAG
GATAGTATGGAGGACTTGCGAAAGGAACTCGCCTCCAACCAGTCTTCTCT
GTCGGACTTGCGAAAGGAAACCACCTCCAACCAGTTCAAGCGTGGGAAGC
GATCCCAGTTCCTGCCGTACTTGCCGGTCTTGTTTGACGGGGAGACGGGT
GAGTGTGGGTGGGTACCCACTGGGTTCACGGACAGCAGTGGTACGTATCT
CGGCCGGGTACATGGCGCGTTTCTTCAGCACCGAGTGTCGTGCGAAAATC
AGCGAGGCAGAGACCGCATCTTTTTTCACGGCTGAAGACAACTTTCCGCG
GAGCGAGCAACTTGGGTTTAATGACTACTCAAGACTTCTGCTGCAGACGC
CGTTCGTTTTTCTAGCGGTAGGGTCTAGGTGAAACAAAAAAGAAAAGGAT
GGCCGGCACCGCTTCGTCATCACCCCCATGTCGAGCTTCCAGAAGCTTCT
GGAAGACATAGACATCCACCTACCGGACCGCCCCGCCACCCGTGACTTCC
TCAAAAGCCCCAGTCACAAGAATGTAGGCAACGCGTACGCCTACTTGAAC
AAGTCAAGATCAGACCCTTCCACCGGACCAATTGTGGCCATCAAGAAGTC
CCTCTCCCTGGATCAGACACGCCTAATTCCGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig899:20532..21363-

>mRNA_P-littoralis_Contig899.4.1 ID=mRNA_P-littoralis_Contig899.4.1|Name=mRNA_P-littoralis_Contig899.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=465bp|location=Sequence derived from alignment at P-littoralis_Contig899:20532..21363- (Pylaiella littoralis U1_48)
ATGATACAGTGGGGGATGCAAAACCAGTTCAAGACCAACGACATCATGAC
GACCAACAACGCCCAGGTGCACCAGGAATTGAAGACCGGTCAAATCCAGC
TGACCACCGGTCTTCTCGAGTTGAACACCGGTTTACAAACTGTGGCCCAA
GGCTTCACTTCGAGGTTCGTATCTCTAGAGGATAGTATGGAGGACTTGCG
AAAGGAACTCGCCTCCAACCAGTCTTCTCTGTCGGACTTGCGAAAGGAAA
CCACCTCCAACCAGTTCAAGCGTGGGAAGCGATCCCAGTTCCTGCCGTAC
TTGCCGGTCTTGTTTGACGGGGAGACGGGTGAGTGTGGGTGGGTACCCAC
TGGGTTCACGGACAGCAGTGGTACGTATCTCGGCCGGGTACATGGCGCGT
TTCTTCAGCACCGAGTGTCGTGCGAAAATCAGCGAGGCAGAGACCGCATC
TTTTTTCACGGCTGA
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