mRNA_P-littoralis_Contig896.22.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig896.22.2
Unique NamemRNA_P-littoralis_Contig896.22.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig896.22.2 vs. uniprot
Match: A0A6H5JXX9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXX9_9PHAE)

HSP 1 Score: 195 bits (495), Expect = 2.280e-57
Identity = 86/157 (54.78%), Postives = 111/157 (70.70%), Query Frame = 3
Query:  222 ELPTPDADGYVGGNSQACHAQFIEFVEADSSSRDSESDLYRAFAFEIASQVGGRYCRHVEEPPALEDMSLAKKKKAAANHPGLCGVHHAAVIAGVKTQDVVDKWGTTTANKYRNQACFDGAVALNARGAGVQLPRAQCFAEACGALWPGGDEMPACV 692
            ++PTPD +GY  GN+ ACH Q +  + A++ + +  S L RAFAFE+A++VG  YC H   P  +  M+LA  KKAAA HPGLCGVHHA +IA V+T+DV  + G T ANK+RNQAC+DG +A+N RG GVQL RA CF  AC A+WPG +EM A V
Sbjct:    2 DMPTPDVEGYKAGNTMACHGQRVSLIAANTPAEEGTSTLLRAFAFEVAAKVGAEYCHHDTAPEPMPSMALAAAKKAAAEHPGLCGVHHAHIIAAVRTEDVTSRSGFTAANKFRNQACYDGGMAMNTRGKGVQLKRADCFTHACRAVWPGNEEMEASV 158          
BLAST of mRNA_P-littoralis_Contig896.22.2 vs. uniprot
Match: A0A6H5KUP8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUP8_9PHAE)

HSP 1 Score: 187 bits (474), Expect = 1.440e-54
Identity = 83/152 (54.61%), Postives = 110/152 (72.37%), Query Frame = 3
Query:  225 LPTPDADGYVGGNSQACHAQFIEFVEADSSSRDSESDLYRAFAFEIASQVGGRYCRHVEEPPALEDMSLAKKKKAAANHPGLCGVHHAAVIAGVKTQDVVDKWGTTTANKYRNQACFDGAVALNARGAGVQLPRAQCFAEACGALWPGGDEM 680
            +PTPD +G   GN+ ACH Q +  + A++ + +  S L RAFAFE+A++VG  YC H   P  +  M+LA  KKAAA HPGLCGV+HA +IA V+T+DV  + G+T ANK+RNQAC+DGA+A+NARG GVQL RA+CF  A  A+WPG +EM
Sbjct:    1 MPTPDVEGCKAGNTMACHEQMVSLIAANTPAEEDTSTLVRAFAFEVAAKVGAEYCHHDTAPEPMPSMALAAAKKAAAEHPGLCGVYHAHIIAAVRTEDVTSRSGSTAANKFRNQACYDGAMAMNARGKGVQLKRAECFTHARRAVWPGNEEM 152          
BLAST of mRNA_P-littoralis_Contig896.22.2 vs. uniprot
Match: A0A6H5JH50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH50_9PHAE)

HSP 1 Score: 185 bits (470), Expect = 7.390e-53
Identity = 85/128 (66.41%), Postives = 101/128 (78.91%), Query Frame = 3
Query:  321 DSESDLYRAFAFEIASQVGGRYCRHVEEPPALEDMSLAKKKKAAANHPGLCGVHHAAVIAGVKTQDVVDKWGTTTANKYRNQACFDGAVALNARGAGVQLPRAQCFAEACGALWPGGDEMPACVIEVF 704
            +  +D+ RAFAFE+AS+VG RYC HV  P  LEDMS AK+KKAAA+HPGLCGV+HA +IA V+TQDV +KW  TT NKYRNQAC++GA A+NARGAGVQLPRA+CF  AC AL PG  EM   V+E F
Sbjct:  104 EENTDVGRAFAFEVASKVGARYCSHVSAPEPLEDMSHAKRKKAAADHPGLCGVYHAHIIAAVRTQDVAEKWNQTTGNKYRNQACYNGAEAVNARGAGVQLPRAECFTRACRALLPGSGEMDPLVVEAF 231          
BLAST of mRNA_P-littoralis_Contig896.22.2 vs. uniprot
Match: A0A6H5K6B0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6B0_9PHAE)

HSP 1 Score: 180 bits (457), Expect = 4.260e-51
Identity = 80/152 (52.63%), Postives = 108/152 (71.05%), Query Frame = 3
Query:  225 LPTPDADGYVGGNSQACHAQFIEFVEADSSSRDSESDLYRAFAFEIASQVGGRYCRHVEEPPALEDMSLAKKKKAAANHPGLCGVHHAAVIAGVKTQDVVDKWGTTTANKYRNQACFDGAVALNARGAGVQLPRAQCFAEACGALWPGGDEM 680
            +P P+ +G   GN+ ACH Q +  + A++ + +  S L RAFAFE+A++VG  YC H   P  +  M+LA  KKAAA HPGLCGV+HA +IA V+T+DV  + G+T ANK+RNQAC+DGA+A+NA G GVQL RA+CF  A  A+WPG +EM
Sbjct:   70 MPPPNVEGCKAGNTMACHEQMVSLIAANTPAEEDTSTLVRAFAFEVAAKVGAEYCHHDTAPEPMPSMALAAAKKAAAEHPGLCGVYHAHIIAAVRTEDVTSQSGSTAANKFRNQACYDGAMAMNAHGKGVQLKRAECFTHARRAVWPGNEEM 221          
BLAST of mRNA_P-littoralis_Contig896.22.2 vs. uniprot
Match: A0A6H5KH61_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH61_9PHAE)

HSP 1 Score: 151 bits (381), Expect = 1.760e-40
Identity = 69/117 (58.97%), Postives = 89/117 (76.07%), Query Frame = 3
Query:  216 MAELPTPDADGYVGGNSQACHAQFIEFVEADSSSRDSESDLYRAFAFEIASQVGGRYCRHVEEPPALEDMSLAKKKKAAANHPGLCGVHHAAVIAGVKTQDVVDKWGTTTANKYRNQ 566
            M +LPTPD + YVGGN QAC+ Q ++ + A  +  ++ +D+ RAFAFE+ S+VG RYC H+  P  LEDMS AK+KKAAA+HPGLCGV+HA +IA V+TQDV +KW  TT NKYRNQ
Sbjct:    1 MEDLPTPDIEAYVGGNQQACYVQLVDVLSALPAGEEN-TDVGRAFAFEVPSKVGARYCSHLSAPEPLEDMSHAKRKKAAADHPGLCGVYHAHIIAAVRTQDVAEKWNQTTGNKYRNQ 116          
BLAST of mRNA_P-littoralis_Contig896.22.2 vs. uniprot
Match: A0A6H5KQB2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB2_9PHAE)

HSP 1 Score: 135 bits (340), Expect = 1.560e-34
Identity = 65/131 (49.62%), Postives = 83/131 (63.36%), Query Frame = 3
Query:  222 ELPTPDADGYVGGNSQACHAQFIEFVEADSSSRDSESDLYRAFAFEIASQVGGRYCRHVEEPPALEDMSLAKKKKAAANHPGLCGVHHAAVIAGVKTQDVVDKWGTTTANKYRNQACFDGAVALNARGAGV 614
            ELP PD + Y  GN++              S   + ++L RAFAFEIA+ VGG YC H+ EP  +  M+ +  K AAA HPGLCGV+HA ++A VKTQDV  + G+T  NKYRNQAC DGA+ +NARG G 
Sbjct:    2 ELPAPDVEAYKAGNTRPATIMVSLIANNPPSEDGTNNNLARAFAFEIAAAVGGEYCDHLTEPEPMPSMAPSAAKVAAAEHPGLCGVYHAHILAAVKTQDVQARSGSTAGNKYRNQACCDGAITMNARGRGA 132          
BLAST of mRNA_P-littoralis_Contig896.22.2 vs. uniprot
Match: A0A6H5JAI4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAI4_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 5.730e-34
Identity = 59/96 (61.46%), Postives = 75/96 (78.12%), Query Frame = 3
Query:  414 LEDMSLAKKKKAAANHPGLCGVHHAAVIAGVKTQDVVDKWGTTTANKYRNQACFDGAVALNARGAGVQLPRAQCFAEACGALWPGGDEMPACVIEV 701
            +  M+LA  KKAAA HPGLCGV+HA +IA V+T+DV  + G+T ANK+RNQAC+DGA+A+NARG GVQL RA+CF  A  A+WPG +EM A V+E 
Sbjct:    1 MPSMALAAAKKAAAEHPGLCGVYHAHIIAAVRTEDVTSRSGSTAANKFRNQACYDGAMAMNARGKGVQLKRAECFTHAGRAVWPGNEEMEASVVEA 96          
BLAST of mRNA_P-littoralis_Contig896.22.2 vs. uniprot
Match: A0A6H5K6T9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6T9_9PHAE)

HSP 1 Score: 128 bits (322), Expect = 6.660e-33
Identity = 59/98 (60.20%), Postives = 70/98 (71.43%), Query Frame = 3
Query:  414 LEDMSLAKKKKAAANHPGLCGVHHAAVIAGVKTQDVVDKWGTTTANKYRNQACFDGAVALNARGAGVQLPRAQCFAEACGALWPGGDEMPACVIEVFS 707
            +  M  A  K AAA HPGLCGV+HA +IA VK QDV+ + G+T ANKYRNQAC+DG +A+NARG GVQL R +CF   C ALWPG  E  A V+E FS
Sbjct:    1 MPSMKAAAAKVAAAEHPGLCGVYHAHIIAAVKIQDVLARSGSTAANKYRNQACYDGEMAMNARGQGVQLKREECFTHPCRALWPGSGESDASVVEAFS 98          
BLAST of mRNA_P-littoralis_Contig896.22.2 vs. uniprot
Match: A0A6H5KGD0_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGD0_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 8.410e-21
Identity = 50/116 (43.10%), Postives = 66/116 (56.90%), Query Frame = 3
Query:  363 ASQVGGRYCRHVEEPPALEDMS-LAKKKKAAANHPGLCGVHHAAVIAGVKTQDVVDK--WGTTTANKYRNQACFDGAVALNARGAGVQLPRAQCFAEACGALWPGGDEMPACVIEV 701
            A  VG RYC H   P  L D+S L +++ A   H GLCG +HA  IA +    V ++      T  + RNQAC+D   ALNARG GVQL R +CF +AC A+WP    +PA  + +
Sbjct:   50 AVAVGARYCNHDTPPGPLPDISKLPERQAAVQQHAGLCGKYHAEHIANIDVTRVEERAAGAEITTKRMRNQACYDAGTALNARGRGVQLRRQECFTQACCAVWPDDQPLPAAKLAI 165          
BLAST of mRNA_P-littoralis_Contig896.22.2 vs. uniprot
Match: A0A6H5KUN4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUN4_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 3.100e-10
Identity = 31/51 (60.78%), Postives = 39/51 (76.47%), Query Frame = 3
Query:  414 LEDMSLAKKKKAAANHPGLCGVHHAAVIAGVKTQDVVDKWGTTTANKYRNQ 566
            +  M +A  K AAA HPGLCGV+HA +IA VK+QDV+ + G+T ANKYRNQ
Sbjct:    1 MPSMKVAAAKVAAAEHPGLCGVYHAHIIAVVKSQDVLARSGSTAANKYRNQ 51          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig896.22.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A6H5JXX9_9PHAE2.280e-5754.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KUP8_9PHAE1.440e-5454.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JH50_9PHAE7.390e-5366.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6B0_9PHAE4.260e-5152.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KH61_9PHAE1.760e-4058.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQB2_9PHAE1.560e-3449.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JAI4_9PHAE5.730e-3461.46Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6T9_9PHAE6.660e-3360.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KGD0_9PHAE8.410e-2143.10Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KUN4_9PHAE3.100e-1060.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig896contigP-littoralis_Contig896:61129..63058 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1215
Hectar predicted targeting categoryother localisation
Exons2
Cds size498
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791784.4331977-UTR-P-littoralis_Contig896:61128..616301680791784.4331977-UTR-P-littoralis_Contig896:61128..61630Pylaiella littoralis U1_48UTRP-littoralis_Contig896 61129..61630 -
1680791784.4767787-UTR-P-littoralis_Contig896:62843..630581680791784.4767787-UTR-P-littoralis_Contig896:62843..63058Pylaiella littoralis U1_48UTRP-littoralis_Contig896 62844..63058 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791784.447874-CDS-P-littoralis_Contig896:61630..617771680791784.447874-CDS-P-littoralis_Contig896:61630..61777Pylaiella littoralis U1_48CDSP-littoralis_Contig896 61631..61777 -
1680791784.461559-CDS-P-littoralis_Contig896:62492..628431680791784.461559-CDS-P-littoralis_Contig896:62492..62843Pylaiella littoralis U1_48CDSP-littoralis_Contig896 62493..62843 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig896.22.2prot_P-littoralis_Contig896.22.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig896 61631..62843 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig896.22.2

>prot_P-littoralis_Contig896.22.2 ID=prot_P-littoralis_Contig896.22.2|Name=mRNA_P-littoralis_Contig896.22.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=166bp
MAELPTPDADGYVGGNSQACHAQFIEFVEADSSSRDSESDLYRAFAFEIA
SQVGGRYCRHVEEPPALEDMSLAKKKKAAANHPGLCGVHHAAVIAGVKTQ
DVVDKWGTTTANKYRNQACFDGAVALNARGAGVQLPRAQCFAEACGALWP
GGDEMPACVIEVFSL*
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mRNA from alignment at P-littoralis_Contig896:61129..63058-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig896.22.2 ID=mRNA_P-littoralis_Contig896.22.2|Name=mRNA_P-littoralis_Contig896.22.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=1930bp|location=Sequence derived from alignment at P-littoralis_Contig896:61129..63058- (Pylaiella littoralis U1_48)
GCGTTCTAGACTTGAGCATACAAATTCAAGACAATAGCTAAAAAATCATT ACCAGCTATTGATTACCCCCCAAGCACTGTAGCTCCGCTACCACGATATG CACTTCTGTTTTATTTTTATTTTCATGTGGGCTGGTACGTCGGTGCTGCT GCTGCGGCCTGCGGCCGCTCTCCAGTCCAACCCTAACCCAAACAAACCAA TACAAGCTCAAACATATGGCCGAGCTACCCACGCCCGACGCCGATGGCTA CGTGGGCGGCAACTCCCAGGCTTGCCACGCCCAATTCATAGAGTTCGTGG AAGCGGACTCCTCGTCGAGGGACAGCGAGAGCGACCTCTATCGAGCGTTT GCGTTCGAGATTGCCAGCCAAGTTGGCGGGCGCTACTGCCGCCATGTCGA GGAACCGCCCGCCCTTGAAGACATGAGCCTCGCCAAGAAGAAGAAGGCAG CTGCGAACCACCCGGGCCTATGCGGTGTTCACCATGCCGCTGTCATCGCT GGGGTGAAAACGCAAGATGTGGTGGACAAATGGGGAACAACCACGGCTAA CAAGTACAGAAACCAGGTGAGCCCAATACCTGACTGGAACCTATATAATT ATATACGGAGTACCAGGTATACTAAAAAAAAGGCTGCTACTGCTGTACGT TCCCGATACAGCAGCAGTAATATATAGAGTACAGAGTAGCACACATACTG CTGTATGCATTCAATAAATATGACACATACATGCATACAGCAGTATGACT GCTGCTGCTGCTGCTGCTGCTGCTGCTGTTGCTGTTGATAATTGCCAACT CTCTCTTTGTATGTTTATTTCAAACCATAGACTCTAGTCTCGACTAATAA TAAACATGTTGTAGACTACCAGCACAACATATGTATTGCATGTGACAATA GCAGCAGCCATTGTTCTTGCATAGGCTACGTAGTAGTCTATAGCGGTATG GAACAGCAGCAGCAGAAGTCACACTTACTGGATAATTCACATGCCGTATA AATACTTCGAAGCAATACATTTCATACATGACATCAGTGGTGGTTGTAGT ACATATAGAGCTTGTCTCTCCCAGCCTCCTCCCCTGTTTTAGCTGTGTAG GCGCTCGCTGCGACGTCTCTTGTAGATGACCAAATAGAACATACTCAGCA TAATATACTGATGATTTCCAATCGAGCCGCGTTGCATCTTGTACTCATCG TACTGCTGTTCCTGACATATCCAACTGCTGTCTCTCCTGTGCTTGGTACC GCTGTATGATGTATGCATGAATCTTTGACAGGCGTGCTTCGACGGAGCTG TAGCCTTGAACGCTCGCGGTGCGGGCGTACAGCTGCCGAGGGCGCAGTGC TTTGCTGAGGCGTGTGGGGCACTCTGGCCTGGCGGCGACGAGATGCCGGC GTGTGTGATTGAAGTTTTTTCTCTGTAGGGTACAACAAAGTAATTGCCCC GACGCTAATAAATGTCGGCGGGCCATCGTGTGTTGGTTGGCCTTGCTCGT GTTGTCTTGAGCGAAACTGCATGTTGCTATAGGTTGCGCCGCTGCGCTAT CCGACGCGCGACGGCACTCAGCGTGGGCGAGTTGTTTTGTGCCTCCATGC CTTCGTTCTGTGGTGTGCTGTTGTTTGGTATATATGCACACGATGTGGTA AACACGCTTTCGGCTACATTAGTGCATCGTGATTAGCGTCTTGTTGGGGG AACCCATGGTGGATGCAGTGATGCAGGGCATTTGGTACAACATAGACTTG AAGAATACAAGAAGATCGAGGCACATGTGTGCGCTGTCTATGTCTGTCGA GGGAGTTCGTTTTCTGTACGGAGTCACAGCGCGTGGGCGAGCGTGGCAGA AGTGAACCGAACAGGATTCATCAAGTAATACAGGCGGTAGATACGGAAAG GCTTCTACACGCCCATTGCCGCAAAACGAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig896:61129..63058-

>mRNA_P-littoralis_Contig896.22.2 ID=mRNA_P-littoralis_Contig896.22.2|Name=mRNA_P-littoralis_Contig896.22.2|organism=Pylaiella littoralis U1_48|type=CDS|length=498bp|location=Sequence derived from alignment at P-littoralis_Contig896:61129..63058- (Pylaiella littoralis U1_48)
ATGGCCGAGCTACCCACGCCCGACGCCGATGGCTACGTGGGCGGCAACTC
CCAGGCTTGCCACGCCCAATTCATAGAGTTCGTGGAAGCGGACTCCTCGT
CGAGGGACAGCGAGAGCGACCTCTATCGAGCGTTTGCGTTCGAGATTGCC
AGCCAAGTTGGCGGGCGCTACTGCCGCCATGTCGAGGAACCGCCCGCCCT
TGAAGACATGAGCCTCGCCAAGAAGAAGAAGGCAGCTGCGAACCACCCGG
GCCTATGCGGTGTTCACCATGCCGCTGTCATCGCTGGGGTGAAAACGCAA
GATGTGGTGGACAAATGGGGAACAACCACGGCTAACAAGTACAGAAACCA
GGCGTGCTTCGACGGAGCTGTAGCCTTGAACGCTCGCGGTGCGGGCGTAC
AGCTGCCGAGGGCGCAGTGCTTTGCTGAGGCGTGTGGGGCACTCTGGCCT
GGCGGCGACGAGATGCCGGCGTGTGTGATTGAAGTTTTTTCTCTGTAG
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