mRNA_P-littoralis_Contig891.1.59 (mRNA) Pylaiella littoralis U1_48
|
Overview
Homology
BLAST of mRNA_P-littoralis_Contig891.1.59 vs. uniprot
Match: D7FZJ2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZJ2_ECTSI) HSP 1 Score: 159 bits (401), Expect = 1.250e-35 Identity = 171/302 (56.62%), Postives = 189/302 (62.58%), Query Frame = 3
Query: 4620 RGGGWGEG-AVSTGTERFRVNFSTAAVDGAAANGHLEVVLWLFLHRAEGGTSGXXXXXXXXXXXXXXXXLKQNTPL------RADF-GGGSPLNPSALDRXXXXXXXXXXXXFHLNSKASSAAPVPAAVNKRNGXXXXXXXXXXXXXXKRNGGGSSNADDFDGFTYRLMDEAASNGHLQICQWLHQHRSEGCSWNXXXXXXXXXXXXXXXXXDGHYRSVGPSAVXXXXXXXXXXXXXXXXXLRCYPENAESGCMWAFQELSEASGNEPLTGPKRNWTLDPEVLELLKLARSSHHSR-RWSLS 5498
RG G EG AV G RFRV ST AVD AA NGHLEVV WL+LHRAEGGT+G XXXXXXXXXXXXL +NTPL RA+F G S LNPSALD XXXXXXXXXXXX + +R+G DGFTYRLM L QHRSEGCSWN XXXXXXXXXXXXXXXXD HY +VGPSAV XXXXXXXXXXXXXXXXLR +P A +GCMWA QELS ++P TG KR W +DPEVLEL++ A S+ +R W +S
Sbjct: 520 RGAGDAEGLAVGAGRNRFRVAMSTDAVDRAAGNGHLEVVRWLYLHRAEGGTAGAITAXXXXXXXXXXXXLARNTPLMVTNTRRANFFRGTSVLNPSALDXXXXXXXXXXXXXXXXXXPKN---------RRRSGE--------------------------DGFTYRLMXXXXXXXXXXXXXXLRQHRSEGCSWNAXXXXXXXXXXXXXXXXDRHYHAVGPSAVAXXXXXXXXXXXXXXXXLRRHPGEARAGCMWATQELSPTPASDPTTGAKRTWKVDPEVLELVRTAWDSYRARVPWGIS 786
BLAST of mRNA_P-littoralis_Contig891.1.59 vs. uniprot
Match: A0A6H5K9B3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9B3_9PHAE) HSP 1 Score: 152 bits (383), Expect = 7.150e-33 Identity = 403/1075 (37.49%), Postives = 443/1075 (41.21%), Query Frame = 3
Query: 2508 WGA---STVSGSRCSRRAFEGACEAGDYATALWLASERSAEVEEASHCVDRAAKSGNLDLVTWLSSSRVWNPSIGHKDRWARATTAAMDDAAAGGHVKVVRWLHDHRPEGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWTLLGGAQAAARNGNLATLSYLLLGGKDDDDVDGYDDGFGGFARADGGSPAPSASSPRFSSTDFGGAPCAGGVRRAGGCGGDCDDSCGGGGRDDRGDKTDCCCASRAERLGGCGRGCGCAPDGRFYGGDGGGWACGCXXXXXXXXXLLRPFPSVVSTADEGXXXXXXXXXXXXXXXXXXXXXXGGDRNDVDGLVLAGGGSVPVSGAATLDLDEAAAAGRLDVLMWARRATMGISASSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------------------------GR-SSLEQAXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGGLSHRPP-------PTRRGGHSRSRCRRCRK-------ADHRR----------------------------HSRSGSVSLPSTVAAXXXXXXXXXXXXXXXXXXXXXXXADLSPDAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSNTVE---DHNGWKTQPWSNLVSRCGCGGGRRLLVGAGGERGGGWGEGAVSTGTERFRVNFSTAAVDGAAANGHLEVVLWLFLHRAEGGTSGXXXXXXXXXXXXXXXXLKQNTPLRAD-------FGGGSPLNPSALDRXXXXXXXXXXXXFHLNSKASSAAPVPAAVNKRNGXXXXXXXXXXXXXXKRNGGGSSNADDFDGFTYRLMDEAASNGHLQICQWLHQHRSEGCSWNXXXXXXXXXXXXXXXXXDGHYRSVGPSAVXXXXXXXXXXXXXXXXXLRCYPENAESGCMWAFQELSEASGNEPLTGPKR--NWTLDPEVLELLKLARSSHHSR 5483
WGA SG RCSR A E ACEAG ++TA+WLAS+RSAEVE A C+ WNPS RWA ATT AMDDAAAG RWLH HRPEG XXXXXXXXXXXXXX XXXXXXXXXXXXXXX WTL GGAQ AAR G LA LSYLLLG +D +DDGFG AP S P + AG A+ AE GG G D +GGD G ++ A XXXXXXXXXXXXXXXXXXXXXX + +DGL+LAGG V + TLDLDEAAA GRL VL WARRATM + S XXXXXXX GR S E+ XXX P GG+ A+ +R H RSGSV+L + AA A XXXXXXXXXXXXXXXXXXXXXX S+T DH G G GG L VGAG RFRV ST AVD AA NGHLEVV WL+LHRAEGGT+G XXXXXXXXXXXXL +NTPL A F G S LNPSALDRXXXXXXXXXXXX A +R+G DGFTYRLM L QHRSEGCSWNXXXXXXXXXXXXXXXXX Y +VGPSAV XXXXXXXXXXXXXXLR +P A +GCMWA QELS ++ G KR +W +DPEVLEL++ A S+ +R
Sbjct: 499 WGAVGSGAGSGKRCSRAALERACEAGHFSTAVWLASKRSAEVERAYDCIRXXXXXXXXXXXXXXXXXXSWNPSASFAGRWAGATTTAMDDAAAGXXXXXXRWLHAHRPEGXXXXXXXXXXXXXXXHVADRPSDDELNSLITAACXXXXXXXXXXXXXXXRTLEWLRRNRAEG----------------------WTLGGGAQRAARCGQLAALSYLLLGDRDSSAAV-FDDGFG----------APXXXXXLLS-------PLEAALFAAG--------------------------AAGAE-TGGAG-----VVDAHVHGGDDG---------------------DDMAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXADVIDGLLLAGGEGV--AAVVTLDLDEAAAEGRLAVLQWARRATMDGAPSPPSCGARHRFSLDTRLSKMPPLPPPPRLLRPAGLGNLSRSSAQXXXXXXXXXXXXXFPRDAPGGGCYCCCDCGEEGRIGSAEEKRRGPEYSGEAEEDFSYNLPFLPCGGXXXXXXXXXXXPWGEEEKTQEDAGGYGEXXXXXXXXXXXXXXGAEEKRDSFPXXXXXXXXXXXXXXXXXXXXXXXVHGRSGSVTLAYSTAAMERTRAVV---------------ASXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSVPFRSPGGNDAAAAATAGRCDHCRCCCCEVDTRATPSSSVDDSGWRGRQHRCPSSTRRFYGDHGGGVAAEHRRRPEARGAGGAAGLAVGAG---------------RNRFRVTMSTDAVDRAAGNGHLEVVRWLYLHRAEGGTAGAITAXXXXXXXXXXXXLARNTPLMATTTGRVSFFRGTSVLNPSALDRXXXXXXXXXXXXXXXXY---------ANNGRRSGE--------------------------DGFTYRLMXXXXXXXXXXXXXXLRQHRSEGCSWNXXXXXXXXXXXXXXXXXXXXYHAVGPSAVAFIXXXXXXXXXXXXXXLRRHPGEARAGCMWAVQELSPTPASDLTAGAKRQVSWKVDPEVLELVRTAWDSYRTR 1413
BLAST of mRNA_P-littoralis_Contig891.1.59 vs. uniprot
Match: D7FZJ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZJ3_ECTSI) HSP 1 Score: 118 bits (295), Expect = 1.480e-24 Identity = 56/89 (62.92%), Postives = 69/89 (77.53%), Query Frame = 3
Query: 333 VLSYQDGLAGAIYGDGDRASRLGHLGLIKMQFSRVCCSTRSMTPTKERATPLYFTPAAMDGAASSGHLEVIRWLHHQRQEGGTSRAIIE 599
+LS+QDG+AG YGDGDRASRLGHL LIKMQ ++ CCS+ S + A L FTPAAMDGAAS G+L+V+RWLHH R EGGTS +++
Sbjct: 1 MLSFQDGMAGTDYGDGDRASRLGHLELIKMQATKCCCSSSSDARWDDCAESLTFTPAAMDGAASKGYLDVVRWLHHNRLEGGTSEGLLQ 89 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig891.1.59 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig891.1.59 >prot_P-littoralis_Contig891.1.59 ID=prot_P-littoralis_Contig891.1.59|Name=mRNA_P-littoralis_Contig891.1.59|organism=Pylaiella littoralis U1_48|type=polypeptide|length=1800bp MAEPPGAAGGSSAGLHPQGKASLHLPQLQQHSSDIVAVAGGQGTSSKNLAback to top mRNA from alignment at P-littoralis_Contig891:4680..54779- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig891.1.59 ID=mRNA_P-littoralis_Contig891.1.59|Name=mRNA_P-littoralis_Contig891.1.59|organism=Pylaiella littoralis U1_48|type=mRNA|length=50100bp|location=Sequence derived from alignment at P-littoralis_Contig891:4680..54779- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig891:4680..54779- >mRNA_P-littoralis_Contig891.1.59 ID=mRNA_P-littoralis_Contig891.1.59|Name=mRNA_P-littoralis_Contig891.1.59|organism=Pylaiella littoralis U1_48|type=CDS|length=5400bp|location=Sequence derived from alignment at P-littoralis_Contig891:4680..54779- (Pylaiella littoralis U1_48)back to top |