mRNA_P-littoralis_Contig890.5.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig890.5.1
Unique NamemRNA_P-littoralis_Contig890.5.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig890.5.1 vs. uniprot
Match: A0A6H5KVF4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF4_9PHAE)

HSP 1 Score: 192 bits (488), Expect = 1.400e-53
Identity = 89/109 (81.65%), Postives = 96/109 (88.07%), Query Frame = 1
Query:    1 LSTDYIQRMLVMVMRFLMVAHPDKAFDVVATVCDGAAEHCSFQTHAAILGFVHWIKGPNEGSFASFNIGFRHPVHLHEVFNMSDPMHILKKIVNALWHSDIPCQAAPVG 327
            LSTDYIQRML+ VMR+L +AHPDKAFDVVAT+CDGA EH SFQTHAAILGF HWIKGP EGSFA F +GF HPVHLHEVFNMSDPMHILKKIVNALWHSDIP +   +G
Sbjct:  710 LSTDYIQRMLIRVMRYLAMAHPDKAFDVVATICDGAPEHRSFQTHAAILGFCHWIKGPKEGSFAGFKVGFLHPVHLHEVFNMSDPMHILKKIVNALWHSDIPAKQRQLG 818          
BLAST of mRNA_P-littoralis_Contig890.5.1 vs. uniprot
Match: D7FZI2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZI2_ECTSI)

HSP 1 Score: 188 bits (478), Expect = 3.870e-52
Identity = 87/109 (79.82%), Postives = 94/109 (86.24%), Query Frame = 1
Query:    1 LSTDYIQRMLVMVMRFLMVAHPDKAFDVVATVCDGAAEHCSFQTHAAILGFVHWIKGPNEGSFASFNIGFRHPVHLHEVFNMSDPMHILKKIVNALWHSDIPCQAAPVG 327
            LSTDYIQRML+  MR+L +AHPDKAFDV+AT CDGA EH SFQTHAAILGF HWIKGP EGSFA F +GF HPVHLHEVFNMSDPMHILKKIVNALWHSDIP +   +G
Sbjct:  619 LSTDYIQRMLIRAMRYLAMAHPDKAFDVIATECDGAPEHRSFQTHAAILGFCHWIKGPKEGSFAGFKVGFLHPVHLHEVFNMSDPMHILKKIVNALWHSDIPAKQRQLG 727          
BLAST of mRNA_P-littoralis_Contig890.5.1 vs. uniprot
Match: A0A6H5L5M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5M0_9PHAE)

HSP 1 Score: 157 bits (396), Expect = 2.890e-41
Identity = 83/149 (55.70%), Postives = 91/149 (61.07%), Query Frame = 1
Query:    1 LSTDYIQRMLVMVMRFLMVAHPDKAFDVVATVCDGAA----------------------------------------EHCSFQTHAAILGFVHWIKGPNEGSFASFNIGFRHPVHLHEVFNMSDPMHILKKIVNALWHSDIPCQAAPVG 327
            LSTD+IQRML+ VMR L +AHPDKAFDV+ATVCDGA                                         +  SFQTHAAI GF  WIKGP EGSF SF +G  HPVHLHEVFNMSDPMHILKKIVNALWHSDIP +   +G
Sbjct:  477 LSTDFIQRMLIRVMRSLAMAHPDKAFDVIATVCDGAPGQLGEVTLVVAKWMTLERPCVEPYFMIGPFPLVAPSRTPLDSRSFQTHAAISGFCRWIKGPQEGSFTSFKVGILHPVHLHEVFNMSDPMHILKKIVNALWHSDIPAKQRQLG 625          
BLAST of mRNA_P-littoralis_Contig890.5.1 vs. uniprot
Match: D8LK65_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK65_ECTSI)

HSP 1 Score: 113 bits (282), Expect = 2.450e-27
Identity = 56/104 (53.85%), Postives = 69/104 (66.35%), Query Frame = 1
Query:    1 LSTDYIQRMLVMVMRFLMVAHPDKAFDVVATVCDGAAEHCSFQTHAAILGFVHWIKGPN--EGSFASFNIGFRHPVHLHEVFNMSDPMHILKKIVNALWHSDIP 306
            L+   + RML  +M  L  AH DK FDV+ TVCDGAAEH SFQ + A + F  W +G +  E     F + F+HP H   VFNMSDP+H+LKK+VNALWHSDIP
Sbjct:   81 LTGPKLARMLDDIMTSLYQAHSDKNFDVIGTVCDGAAEHRSFQKYLAEIAFSEWARGDSAFEKRMGDFKVAFKHPSHGGPVFNMSDPVHLLKKVVNALWHSDIP 184          
BLAST of mRNA_P-littoralis_Contig890.5.1 vs. uniprot
Match: A0A6H5KFP1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFP1_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 7.100e-22
Identity = 53/103 (51.46%), Postives = 64/103 (62.14%), Query Frame = 1
Query:    1 LSTDYIQRMLVMVMRFLMVAHPDKAFDVVATVCDGAAEHCSFQTHAAILGFVHWIKGPN--EGSFASFNIGFRHPVHLHEVFNMSDPMHILKKIVNALWHSDI 303
            LS   I RML  +   L  AH DK FDV+ TVCDGAAEH SFQ H A   F  W K  +  E     + + F+HP H   VFNMSDP+H+LKK+VNALW+S +
Sbjct:  467 LSGPKISRMLDEITNKLYEAHEDKKFDVIGTVCDGAAEHRSFQQHFATTTFSEWAKSDSVFEQRHKDYPVAFKHPHHDGPVFNMSDPVHLLKKVVNALWYSGL 569          
BLAST of mRNA_P-littoralis_Contig890.5.1 vs. uniprot
Match: A0A6H5JR14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR14_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 6.370e-13
Identity = 34/77 (44.16%), Postives = 53/77 (68.83%), Query Frame = 2
Query:  308 AKQRQLGMWCVTDQDELEFSQFSLKTAQRVYNDVEYDNDSMTPEERAATLTIFPGIPVAAFNRTNFTCMNVKLSAKV 538
            +K+R+L MWC  ++   +  +FSL TA+RVYN VE D ++++ EE+ A++T F  +  + FNR ++ CMNV  SAKV
Sbjct:  405 SKKRELAMWCGDEEGNTDLVRFSLATAERVYNQVENDGNTLSQEEKVASITTFRKVVPSCFNRNSWNCMNVSYSAKV 481          
BLAST of mRNA_P-littoralis_Contig890.5.1 vs. uniprot
Match: A0A6H5JRH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRH8_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 1.030e-11
Identity = 35/78 (44.87%), Postives = 47/78 (60.26%), Query Frame = 1
Query:  121 SFQTHAAILGFVHWIKGPNEGSFASFNIGFRHPVHLHEVFNMSDPMHILKKIVNALWHSDIPCQAAPVGDVVRHRPGR 354
            SFQ  AA + F  + +G +E SF++F +  RH VHL  +FN+SDP H++KKI N LWHSD+       G   R  P R
Sbjct:  318 SFQLRAATVEFSAFAQGDDEESFSNFPVALRHSVHLGPMFNVSDPPHLVKKIANTLWHSDLTGAIRDDGTYHRADPAR 395          
BLAST of mRNA_P-littoralis_Contig890.5.1 vs. uniprot
Match: D7G5R1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5R1_ECTSI)

HSP 1 Score: 61.6 bits (148), Expect = 3.910e-8
Identity = 30/38 (78.95%), Postives = 32/38 (84.21%), Query Frame = 1
Query:    1 LSTDYIQRMLVMVMRFLMVAHPDKAFDVVATVCDGAAE 114
            LSTDYIQRML   MRFL +AH DK FDVVATVCDGA+E
Sbjct:  236 LSTDYIQRMLTRTMRFLSIAHRDKGFDVVATVCDGASE 273          
BLAST of mRNA_P-littoralis_Contig890.5.1 vs. uniprot
Match: A0A6H5KYD6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYD6_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 9.740e-8
Identity = 23/36 (63.89%), Postives = 29/36 (80.56%), Query Frame = 1
Query:  196 FNIGFRHPVHLHEVFNMSDPMHILKKIVNALWHSDI 303
            F + FRHP H   VFNMS+P+H+LKK+VNALWHS +
Sbjct:    6 FKVAFRHPQHGRPVFNMSEPVHLLKKVVNALWHSGL 41          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig890.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5KVF4_9PHAE1.400e-5381.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZI2_ECTSI3.870e-5279.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L5M0_9PHAE2.890e-4155.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LK65_ECTSI2.450e-2753.85Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KFP1_9PHAE7.100e-2251.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JR14_9PHAE6.370e-1344.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRH8_9PHAE1.030e-1144.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G5R1_ECTSI3.910e-878.95Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KYD6_9PHAE9.740e-863.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig890contigP-littoralis_Contig890:2159..2912 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size538
Hectar predicted targeting categoryother localisation
Exons2
Cds size477
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791779.752013-UTR-P-littoralis_Contig890:2158..21951680791779.752013-UTR-P-littoralis_Contig890:2158..2195Pylaiella littoralis U1_48UTRP-littoralis_Contig890 2159..2195 -
1680791779.7978532-UTR-P-littoralis_Contig890:2888..29121680791779.7978532-UTR-P-littoralis_Contig890:2888..2912Pylaiella littoralis U1_48UTRP-littoralis_Contig890 2889..2912 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791779.7681613-CDS-P-littoralis_Contig890:2195..25801680791779.7681613-CDS-P-littoralis_Contig890:2195..2580Pylaiella littoralis U1_48CDSP-littoralis_Contig890 2196..2580 -
1680791779.7788336-CDS-P-littoralis_Contig890:2796..28881680791779.7788336-CDS-P-littoralis_Contig890:2796..2888Pylaiella littoralis U1_48CDSP-littoralis_Contig890 2797..2888 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig890.5.1prot_P-littoralis_Contig890.5.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig890 2196..2888 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig890.5.1

>prot_P-littoralis_Contig890.5.1 ID=prot_P-littoralis_Contig890.5.1|Name=mRNA_P-littoralis_Contig890.5.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=159bp
MLVMVMRFLMVAHPDKAFDVVATVCDGAAEHCSFQTHAAILGFVHWIKGP
NEGSFASFNIGFRHPVHLHEVFNMSDPMHILKKIVNALWHSDIPCQAAPV
GDVVRHRPGRVGVFSVLLEDRATSVQRRRVRQRQHDSRGTSCHLDHLPRH
TGGRVQQD*
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mRNA from alignment at P-littoralis_Contig890:2159..2912-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig890.5.1 ID=mRNA_P-littoralis_Contig890.5.1|Name=mRNA_P-littoralis_Contig890.5.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=754bp|location=Sequence derived from alignment at P-littoralis_Contig890:2159..2912- (Pylaiella littoralis U1_48)
CTCAGCACGGACTACATCCAACGCATGTTGGTCATGGTCATGCGTTTTCT CATGGTGGCCCACCCGGATAAGGCCTTCGACGTCGTAGCCACCGTATGCG ACGGTGCAGCTGAGCAGTGAGTGCGCGTTTTTTTTTACGTCGAGTCGAAG ACGTCGGGTGTACCCGACGGACTACATGTAGGCTCAGATAGGTCGTATTG GTGATGGCCGAGTGAACGACGTTGGGAACGGCGTACGTGAAGACGTACTT TGCCTTTCGCTGTTTAGGATTAATTTCGACATCCCCATGCCCTTTTTTTC TTTATTGCGCCCTCGCGAACGCCTCTCGACAGCTGTTCTTTCCAGACACA CGCGGCTATTTTAGGGTTTGTGCATTGGATCAAGGGCCCGAACGAGGGCT CCTTCGCTAGCTTCAACATCGGGTTCCGGCACCCCGTTCATCTTCACGAG GTCTTCAACATGAGCGATCCCATGCACATCCTCAAGAAGATCGTCAACGC CCTTTGGCACAGCGACATCCCCTGCCAAGCAGCGCCAGTTGGGGATGTGG TGCGTCACCGACCAGGACGAGTTGGAGTTTTCTCAGTTCTCCTTGAAGAC CGCGCAACGAGTGTACAACGACGTCGAGTACGACAACGACAGCATGACTC CCGAGGAACGAGCTGCCACCTTGACCATCTTCCCAGGCATACCGGTGGCC GCGTTCAACAGGACTAATTTCACCTGCATGAACGTCAAGCTTTCTGCGAA GGTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig890:2159..2912-

>mRNA_P-littoralis_Contig890.5.1 ID=mRNA_P-littoralis_Contig890.5.1|Name=mRNA_P-littoralis_Contig890.5.1|organism=Pylaiella littoralis U1_48|type=CDS|length=477bp|location=Sequence derived from alignment at P-littoralis_Contig890:2159..2912- (Pylaiella littoralis U1_48)
ATGTTGGTCATGGTCATGCGTTTTCTCATGGTGGCCCACCCGGATAAGGC
CTTCGACGTCGTAGCCACCGTATGCGACGGTGCAGCTGAGCACTGTTCTT
TCCAGACACACGCGGCTATTTTAGGGTTTGTGCATTGGATCAAGGGCCCG
AACGAGGGCTCCTTCGCTAGCTTCAACATCGGGTTCCGGCACCCCGTTCA
TCTTCACGAGGTCTTCAACATGAGCGATCCCATGCACATCCTCAAGAAGA
TCGTCAACGCCCTTTGGCACAGCGACATCCCCTGCCAAGCAGCGCCAGTT
GGGGATGTGGTGCGTCACCGACCAGGACGAGTTGGAGTTTTCTCAGTTCT
CCTTGAAGACCGCGCAACGAGTGTACAACGACGTCGAGTACGACAACGAC
AGCATGACTCCCGAGGAACGAGCTGCCACCTTGACCATCTTCCCAGGCAT
ACCGGTGGCCGCGTTCAACAGGACTAA
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