mRNA_P-littoralis_Contig89.45.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig89.45.1
Unique NamemRNA_P-littoralis_Contig89.45.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig89.45.1 vs. uniprot
Match: D7FZ90_ECTSI (Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ90_ECTSI)

HSP 1 Score: 188 bits (478), Expect = 1.340e-51
Identity = 114/209 (54.55%), Postives = 132/209 (63.16%), Query Frame = 3
Query:   24 MANLLKMASKGDVEGVRKYLKKSGAKINSTDSDGQTALHCGAKGGHVDVCRELLASVANVDAEDSKHRTSLLIAVENNRAKVAKLLCEAGASTSVACP-ADGYTPLHIAAKKGFVECAEVLLQHGAPIDGNPDKWGNLPEDSCAVSEIRVLITMARQERATADAAGC------PPPYNPHAATAPPPTEEYKRDMN-NHHASSPEASPS 626
            M NL  +ASKGD+EGVRK+L +S AKIN+TD  GQT LH  AKGGHV+VCR                              VA++LCEAGASTS     +DG +PLHIAA KGFVECAEVLLQHGAPID + ++WGNLPE+ C VSEIR LI  ARQER   DAAG         PYNP+AA+APPP EE K  +      SSP+A PS
Sbjct:    1 MVNLHDLASKGDLEGVRKFLARSAAKINNTDKAGQTPLHIAAKGGHVEVCRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAQVLCEAGASTSAGLQTSDGRSPLHIAANKGFVECAEVLLQHGAPIDTSRNRWGNLPEEDCVVSEIRTLIAAARQER---DAAGPVAGVAGSSPYNPYAASAPPPMEERKEGVGFPPGCSSPQAPPS 206          
BLAST of mRNA_P-littoralis_Contig89.45.1 vs. uniprot
Match: A0A6P7FUW9_DIAVI (ankyrin-1-like n=1 Tax=Diabrotica virgifera virgifera TaxID=50390 RepID=A0A6P7FUW9_DIAVI)

HSP 1 Score: 66.6 bits (161), Expect = 2.580e-9
Identity = 47/126 (37.30%), Postives = 73/126 (57.94%), Query Frame = 3
Query:   36 LKMASK-GDVEGVRKYLKKSGAKINSTDSDGQTALHCGAKGGHVDVCRELLASVANVDA-EDSKHRTSLLIAVENNRAKVAKLLCEAGASTSVACPADGYTPLHIAAKKGFVECAEVLLQHGAPID 407
            L +AS+ G+++ V++ ++  GA+IN  DS G TALH      H  V + LLA  A+++A E  +  T L I+   N  ++ +LL EAGA+        G  P+HIAAKKG++   E  L++G  +D
Sbjct:   55 LHLASRLGNLDAVQQLIE-GGAEINEVDSSGLTALHVATFSQHKKVAKYLLAHGADLNAIETYQQETPLNISTGINDHEMVRLLIEAGANMQCL-DISGNMPIHIAAKKGYLNIVECFLENGINVD 178          
BLAST of mRNA_P-littoralis_Contig89.45.1 vs. uniprot
Match: UPI001D06E399 (ankyrin-1-like n=1 Tax=Chrysoperla carnea TaxID=189513 RepID=UPI001D06E399)

HSP 1 Score: 62.8 bits (151), Expect = 5.230e-8
Identity = 40/91 (43.96%), Postives = 54/91 (59.34%), Query Frame = 3
Query:  129 TALHCGAKGGHVDVCRELLASVANVDAEDSKHR-TSLLIAVENNRAKVAKLLCEAGASTSVACPADGYTPLHIAAKKGFVECAEVLLQHGA 398
            T LH  AK G++D+  +LL   A+++      R T +  AVEN  + V  +L   GA+  V    DG TPLHIAAK+GF++ AE LL HGA
Sbjct:    2 TPLHIAAKLGYIDIVEDLLNHGASINFLTLTERYTPIHFAVENGTSVVITMLLSRGANFDVQ-GEDGMTPLHIAAKQGFIDIAEDLLNHGA 91          
BLAST of mRNA_P-littoralis_Contig89.45.1 vs. uniprot
Match: A0A553HIN4_9PEZI (BZIP domain-containing protein n=1 Tax=Xylaria flabelliformis TaxID=2512241 RepID=A0A553HIN4_9PEZI)

HSP 1 Score: 61.2 bits (147), Expect = 1.310e-7
Identity = 42/133 (31.58%), Postives = 61/133 (45.86%), Query Frame = 3
Query:   36 LKMASKGDVEGVRKYLKKSGAKINSTDSDGQTALHCGAKGGHVDVCRELLASVANVDAEDSKHRTSLLIAVENNRAKVAKLLCEAGASTSVA---CPADGYTPLHIAAKKGFVECAEVLLQHGAPIDGNPDKW 425
            L MA++   + + + L +  A  N  D DG T L     GG+ +    LL+  A ++  D K R++L  A    R  V ++L + G         C   G TPLHIA    F    ++LLQ GA + G   KW
Sbjct:  168 LHMAARKGRDKIVRTLLQHNADCNQRDGDGLTPLLHAVIGGYCETVTLLLSHGARIELVDHKSRSALHWAAAQKREAVLRVLLQNGGDRLPVMNKCDDSGMTPLHIAVDSDFEAGVQLLLQFGASVSGQKQKW 300          
BLAST of mRNA_P-littoralis_Contig89.45.1 vs. uniprot
Match: A0A1S3ZBC6_TOBAC (serine/threonine-protein kinase STY17-like isoform X1 n=9 Tax=Solanaceae TaxID=4070 RepID=A0A1S3ZBC6_TOBAC)

HSP 1 Score: 61.2 bits (147), Expect = 1.670e-7
Identity = 41/105 (39.05%), Postives = 56/105 (53.33%), Query Frame = 3
Query:   33 LLKMASKGDVEGVRKYLKKSGAKINSTDSDGQTALHCGAKGGHVDVCRELLASVANVDAEDSKHRTSLLIAVENNRAKVAKLLCEAGASTSVACPADGYTPLHIA 347
            LL +A KGDV+GV+  L +    +NS D DG+TALH  A  GHV+V + LL+  AN+DA D    T+   A      +V  +L   GA      P    TP+ +A
Sbjct:   78 LLFLACKGDVKGVKDLLDEDDVDVNSIDLDGRTALHIAACEGHVEVVKLLLSRKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKV----PKTRNTPMTVA 178          
BLAST of mRNA_P-littoralis_Contig89.45.1 vs. uniprot
Match: A0A442MDY3_9HYPH (C-type cytochrome n=1 Tax=Mesorhizobium sp. TaxID=1871066 RepID=A0A442MDY3_9HYPH)

HSP 1 Score: 60.5 bits (145), Expect = 2.100e-7
Identity = 45/122 (36.89%), Postives = 63/122 (51.64%), Query Frame = 3
Query:   45 ASKGDVEGVRKYLKKSGAKINSTDSDGQTA-LHCGAKGGHVDVCRELLASVANVDAEDSKHRTSLLIAVENNRAKVAKLLCEAGASTSVACPADGYTPLHIAAKKGFVECAEVLLQHGAPID 407
            A KGDV  +   L  +GA +N  +SDG  A LH      H+D  R LL   A+V A      T L+ AV  NR +   LL   GA  ++   A    PLH+A KKG ++C + L++ GA ++
Sbjct:   27 AKKGDVAAIAAALD-AGANVN--ESDGLAAPLHYAVNRQHLDAARLLLERGADVKAVSKLGGTPLMAAVAKNRPEFITLLLAHGADPNLT--AGKQAPLHVAVKKGCLDCVKALVEAGADVN 143          
BLAST of mRNA_P-littoralis_Contig89.45.1 vs. uniprot
Match: A0A1S3Z4T3_TOBAC (integrin-linked protein kinase homolog pat-4-like isoform X1 n=5 Tax=Nicotiana TaxID=4085 RepID=A0A1S3Z4T3_TOBAC)

HSP 1 Score: 60.1 bits (144), Expect = 3.680e-7
Identity = 41/105 (39.05%), Postives = 56/105 (53.33%), Query Frame = 3
Query:   33 LLKMASKGDVEGVRKYLKKSGAKINSTDSDGQTALHCGAKGGHVDVCRELLASVANVDAEDSKHRTSLLIAVENNRAKVAKLLCEAGASTSVACPADGYTPLHIA 347
            LL +A KGDV+GV+  L +    +NS D DG+TALH  A  GHV+V + LL+  AN+DA D    T+   A      +V  +L   GA      P    TP+ +A
Sbjct:   78 LLFLACKGDVKGVKDLLDEDDVDVNSIDLDGRTALHIAACEGHVEVVKLLLSRKANLDARDRWGSTAAADAKYYGNVEVYNILKARGAKI----PKTRNTPMTVA 178          
BLAST of mRNA_P-littoralis_Contig89.45.1 vs. uniprot
Match: UPI001F1E9B70 (ankyrin repeat domain-containing protein n=1 Tax=Mesorhizobium muleiense TaxID=1004279 RepID=UPI001F1E9B70)

HSP 1 Score: 58.5 bits (140), Expect = 9.830e-7
Identity = 44/133 (33.08%), Postives = 68/133 (51.13%), Query Frame = 3
Query:   45 ASKGDVEGVRKYLKKSGAKINSTDSDGQTA-LHCGAKGGHVDVCRELLASVANVDAEDSKHRTSLLIAVENNRAKVAKLLCEAGASTSVACPADGYTPLHIAAKKGFVECAEVLLQHGAPIDGNP-DKWGNLP 437
            A KGD+  +   L  +GA +N  +SDG  A LH      H+D  + L+   A+V+A      T L+ AV  NR +   LL   GA+ +    A   TPLH+A K+G ++C + L++ GA ++    D +   P
Sbjct:   27 AKKGDIAAIAAALD-AGANVN--ESDGLAAPLHYAVNRQHLDAAKLLIGRGADVNAVSKIGGTPLMAAVAKNRFEFITLLLAHGANPNST--AGKQTPLHLAVKRGCLDCVKALVEAGADVNARTADSFARTP 154          
BLAST of mRNA_P-littoralis_Contig89.45.1 vs. uniprot
Match: A0A2P4YM66_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YM66_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 1.030e-6
Identity = 38/104 (36.54%), Postives = 55/104 (52.88%), Query Frame = 3
Query:  123 GQTALHCGAKGGHVDVCRELLA-----SVANVDAEDSKHRTSLLIAVENNRAKVAKLLCEAGASTSVACPADGYTPLHIAAKKGFVECAEVLLQHGAPIDGNPD 419
            G T L   A  GH D+ ++LL       V  ++ + +K  T+L +A    R  V +LL + G +   A    GYTPL +AAK+G+VE  +VLL  GA I+   D
Sbjct:  241 GLTPLMYAAMYGHADIVKDLLPLSCQRDVDTIETKCNKKCTALYLAASQRRKTVCELLLDVGRAAVDARDWKGYTPLMVAAKRGYVEIVQVLLSRGANIEAVND 344          
BLAST of mRNA_P-littoralis_Contig89.45.1 vs. uniprot
Match: A0A6S7J881_PARCT (Transient receptor potential cation channel subfamily A member 1-like (Fragment) n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7J881_PARCT)

HSP 1 Score: 58.5 bits (140), Expect = 1.420e-6
Identity = 47/140 (33.57%), Postives = 70/140 (50.00%), Query Frame = 3
Query:   69 VRKYLKKSGAKINSTDSDGQTALHCGAKGGHVDVCRELLASVANVDAEDSKHRTSLLIAVENNRAKVAKLLCEAGASTSVACPA---DGYTPLHIAAKKGFVECAEVLLQHGAPIDGNPDKWGN-----LPEDSCAVSEI 464
            VR    KS   +N T  + QTAL   A+ GH  V  +LL   A+    D   RT L  A+E    ++ KLL +    + +   A   DGYTP+H AA +GF+E   +LL++GA ++   +   +     +   SCAV E+
Sbjct:   63 VRFIGSKSKRFVNETTENSQTALVLAAQCGHTSVVEQLLDLKADFTISDDSDRTVLHYAIEYP--EMLKLLLKKKDLSRLLINAKEKDGYTPVHNAALRGFIESVRILLEYGAELNVFTNTSRSPLHCAVSSQSCAVVEL 200          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig89.45.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZ90_ECTSI1.340e-5154.55Chain A, 4ank: A Designed Ankyrin Repeat Protein W... [more]
A0A6P7FUW9_DIAVI2.580e-937.30ankyrin-1-like n=1 Tax=Diabrotica virgifera virgif... [more]
UPI001D06E3995.230e-843.96ankyrin-1-like n=1 Tax=Chrysoperla carnea TaxID=18... [more]
A0A553HIN4_9PEZI1.310e-731.58BZIP domain-containing protein n=1 Tax=Xylaria fla... [more]
A0A1S3ZBC6_TOBAC1.670e-739.05serine/threonine-protein kinase STY17-like isoform... [more]
A0A442MDY3_9HYPH2.100e-736.89C-type cytochrome n=1 Tax=Mesorhizobium sp. TaxID=... [more]
A0A1S3Z4T3_TOBAC3.680e-739.05integrin-linked protein kinase homolog pat-4-like ... [more]
UPI001F1E9B709.830e-733.08ankyrin repeat domain-containing protein n=1 Tax=M... [more]
A0A2P4YM66_9STRA1.030e-636.54Uncharacterized protein n=1 Tax=Phytophthora palmi... [more]
A0A6S7J881_PARCT1.420e-633.57Transient receptor potential cation channel subfam... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig89contigP-littoralis_Contig89:237126..238609 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FZ90
PFAMsAnk_2,Ank_5,Helo_like_N,Macro,PARP,PNP_UDP_1,WWE
Model size626
Max annot lvl2759|Eukaryota
KEGG koko:K15261
Hectar predicted targeting categoryother localisation
Exons3
Evalue2.2e-52
EggNOG OGsCOG0666@1|root,KOG4177@2759|Eukaryota
EC2.4.2.30
Descriptionspectrin binding
Cds size624
COG categoryI
BRITEko00000,ko01000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791777.49333-UTR-P-littoralis_Contig89:237125..2371271680791777.49333-UTR-P-littoralis_Contig89:237125..237127Pylaiella littoralis U1_48UTRP-littoralis_Contig89 237126..237127 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791777.5106447-CDS-P-littoralis_Contig89:237127..2372791680791777.5106447-CDS-P-littoralis_Contig89:237127..237279Pylaiella littoralis U1_48CDSP-littoralis_Contig89 237128..237279 +
1680791777.523189-CDS-P-littoralis_Contig89:237501..2377681680791777.523189-CDS-P-littoralis_Contig89:237501..237768Pylaiella littoralis U1_48CDSP-littoralis_Contig89 237502..237768 +
1680791777.5368083-CDS-P-littoralis_Contig89:238404..2386091680791777.5368083-CDS-P-littoralis_Contig89:238404..238609Pylaiella littoralis U1_48CDSP-littoralis_Contig89 238405..238609 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig89.45.1prot_P-littoralis_Contig89.45.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig89 237128..238609 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig89.45.1

>prot_P-littoralis_Contig89.45.1 ID=prot_P-littoralis_Contig89.45.1|Name=mRNA_P-littoralis_Contig89.45.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=208bp
MVYLHGLMANLLKMASKGDVEGVRKYLKKSGAKINSTDSDGQTALHCGAK
GGHVDVCRELLASVANVDAEDSKHRTSLLIAVENNRAKVAKLLCEAGAST
SVACPADGYTPLHIAAKKGFVECAEVLLQHGAPIDGNPDKWGNLPEDSCA
VSEIRVLITMARQERATADAAGCPPPYNPHAATAPPPTEEYKRDMNNHHA
SSPEASPS
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mRNA from alignment at P-littoralis_Contig89:237126..238609+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig89.45.1 ID=mRNA_P-littoralis_Contig89.45.1|Name=mRNA_P-littoralis_Contig89.45.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1484bp|location=Sequence derived from alignment at P-littoralis_Contig89:237126..238609+ (Pylaiella littoralis U1_48)
TAATGGTCTACCTTCATGGTCTGATGGCCAACCTGCTCAAAATGGCTAGC AAAGGGGACGTAGAGGGTGTCCGTAAATATCTTAAAAAATCAGGGGCGAA GATCAATTCTACGGATAGCGACGGGCAGACGGCGCTTCACTGCGGCGCGA AGGGGTGAGAATGCAGCGGTATCGTATCTTATGGATACAACTATGCATCA TGATAAAGTGCATCGTAAAACTTAAACAACTTTGCGCACCTGCTCTGCCT CAAGATTTTTGGAAAGGTGAACCGCTCTTTTTTACCCTCGACGACCGATC ACTCGTGTGATACCGACTTCGTTTTGTTGGACCGTTGCTTGTTTTTACCT AAATTATACCGTCGCCGCTTTCTCAGCGGTCACGTTGATGTCTGCCGAGA GCTCCTCGCTTCGGTGGCAAACGTGGATGCCGAGGACTCAAAGCACAGAA CATCTCTACTGATCGCCGTCGAGAACAATAGAGCTAAGGTGGCGAAATTG CTGTGCGAGGCAGGGGCATCGACGAGCGTAGCGTGCCCCGCAGACGGGTA TACACCGCTGCATATCGCGGCGAAGAAGGGCTTTGTCGAGTGTGCCGAAG TCCTGCTTCAGCATGGAGCTCCGATTGACGGGAACCCTGATAAGTGAGAG TCAAGCCGTGAAGAAATTAAAAGTCTGTATAATATCATATGTGTCGGCCT TTAGGCTACGGTATCCTACACTCGTATCTGGCGTATTTCTCACGGGGGTG TCAAAGAGGCTCTTTTATATCACGCGCATGGACGGCTCGGACAGCAGTAT ATTTTGATATGATGAGCGTCCCTCCCACGCCTGACTTTTTTCTTTACTAC TCATAAAACGGTACTACATGAGGTCACACTGGCATGACACCACCTTGAGG TCTTCCGGGGGAATCGGGAATCGGGATAAGATATTAAATGATCTTTTCCT AGCGACTATTCCTGGCGATGGCCAGGCGACAGTCAGTCAAAGCATTGGTA TGCCATGGATGAACTCGGAATGCCCGCGTCTTTGCATGGTTGAGTGTACC GCGGAATGATCAGGTCCCGGGGCGACTTCTCGGTAGTATTCTGCGGCAGT CATCAGAAGTAAACTCTCACATACCGTACTCTCTGTAGTTCTTCCAACGA ACCGTTACGCAACAGTAACAATAGCGGAAAGCACTGGATGAACAATATGG TGAAAGAGAACAAATATCAAGCTACAGTAGTGATAGAACTCAAGTACGTG TTGAATTTTTTCTCGGTCATGTACACCAGGTGGGGTAACCTTCCAGAGGA TAGCTGTGCAGTGTCCGAAATACGCGTCCTCATCACGATGGCACGCCAAG AGCGCGCCACCGCTGACGCAGCTGGTTGTCCTCCTCCCTACAATCCGCAC GCCGCAACGGCCCCGCCACCGACGGAAGAATACAAAAGGGACATGAACAA TCATCACGCGTCTTCACCGGAAGCTTCTCCATCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig89:237126..238609+

>mRNA_P-littoralis_Contig89.45.1 ID=mRNA_P-littoralis_Contig89.45.1|Name=mRNA_P-littoralis_Contig89.45.1|organism=Pylaiella littoralis U1_48|type=CDS|length=624bp|location=Sequence derived from alignment at P-littoralis_Contig89:237126..238609+ (Pylaiella littoralis U1_48)
ATGGTCTACCTTCATGGTCTGATGGCCAACCTGCTCAAAATGGCTAGCAA
AGGGGACGTAGAGGGTGTCCGTAAATATCTTAAAAAATCAGGGGCGAAGA
TCAATTCTACGGATAGCGACGGGCAGACGGCGCTTCACTGCGGCGCGAAG
GGCGGTCACGTTGATGTCTGCCGAGAGCTCCTCGCTTCGGTGGCAAACGT
GGATGCCGAGGACTCAAAGCACAGAACATCTCTACTGATCGCCGTCGAGA
ACAATAGAGCTAAGGTGGCGAAATTGCTGTGCGAGGCAGGGGCATCGACG
AGCGTAGCGTGCCCCGCAGACGGGTATACACCGCTGCATATCGCGGCGAA
GAAGGGCTTTGTCGAGTGTGCCGAAGTCCTGCTTCAGCATGGAGCTCCGA
TTGACGGGAACCCTGATAAGTGGGGTAACCTTCCAGAGGATAGCTGTGCA
GTGTCCGAAATACGCGTCCTCATCACGATGGCACGCCAAGAGCGCGCCAC
CGCTGACGCAGCTGGTTGTCCTCCTCCCTACAATCCGCACGCCGCAACGG
CCCCGCCACCGACGGAAGAATACAAAAGGGACATGAACAATCATCACGCG
TCTTCACCGGAAGCTTCTCCATCG
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