mRNA_P-littoralis_Contig89.34.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig89.34.1
Unique NamemRNA_P-littoralis_Contig89.34.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig89.34.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig89contigP-littoralis_Contig89:197505..198268 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size726
Hectar predicted targeting categoryother localisation
Exons2
Cds size558
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791776.2409813-UTR-P-littoralis_Contig89:197504..1976701680791776.2409813-UTR-P-littoralis_Contig89:197504..197670Pylaiella littoralis U1_48UTRP-littoralis_Contig89 197505..197670 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791776.2538273-CDS-P-littoralis_Contig89:197670..1977521680791776.2538273-CDS-P-littoralis_Contig89:197670..197752Pylaiella littoralis U1_48CDSP-littoralis_Contig89 197671..197752 +
1680791776.267838-CDS-P-littoralis_Contig89:197792..1982681680791776.267838-CDS-P-littoralis_Contig89:197792..198268Pylaiella littoralis U1_48CDSP-littoralis_Contig89 197793..198268 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig89.34.1prot_P-littoralis_Contig89.34.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig89 197671..198268 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig89.34.1

>prot_P-littoralis_Contig89.34.1 ID=prot_P-littoralis_Contig89.34.1|Name=mRNA_P-littoralis_Contig89.34.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=186bp
MHTRCGKEKKRHESCVRAALCTKQHFPRGGRVDGAFVGTRKAGMKVLVRT
RYRARWIDKWGTELYHDCCGQPAWKSTQTKNVTKHTRNIEYSRCFGAITA
AHILSCNTSSSVEMFFFFLDPPPPSPAPRPAISLPHRHLLASSLCAHRHN
VLTTTTTTTTTIIIRVTRYVTASSRHNHSDLVQPAW
back to top

mRNA from alignment at P-littoralis_Contig89:197505..198268+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig89.34.1 ID=mRNA_P-littoralis_Contig89.34.1|Name=mRNA_P-littoralis_Contig89.34.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=764bp|location=Sequence derived from alignment at P-littoralis_Contig89:197505..198268+ (Pylaiella littoralis U1_48)
TGGTGGTGGTGGTAGGGATGGTGGGTAAACCAATAGCGGAGAGCCGTTTG
AAAACGTGGACTTCACCTGGTACAGTTTGGTGCTCGATTCGTCGCTCTCT
TGTTCGTGGAGTTTTCGAGCGCTCTAATTCAGTCTGGTGGGAGATGGGGG
CAACTCAAGAGAAATTATGCACACGAGATGCGGAAAGGAAAAAAAAAGAC
ACGAGTCATGTGTACGAGCAGCACTTTGCACAAAGCAGCATTTTCCGAGT
GGTGGGGAAAATAGGTAGGTGTGGAGACTGAGGAGAAGGGGGGGGGAGAG
TTGACGGTGCTTTTGTTGGCACGAGGAAGGCTGGAATGAAAGTGTTGGTG
AGAACCCGATATAGGGCTCGTTGGATTGATAAGTGGGGGACGGAATTATA
TCATGATTGCTGTGGGCAGCCAGCCTGGAAGTCTACACAAACAAAAAACG
TCACGAAACACACAAGAAATATTGAGTACTCTCGCTGCTTCGGAGCAATA
ACTGCCGCGCATATTTTATCGTGCAATACCTCCTCTTCGGTAGAAATGTT
CTTCTTCTTTCTTGACCCACCTCCCCCCTCCCCCGCACCCCGTCCGGCAA
TCTCGTTACCTCACCGTCACTTGCTTGCTTCGTCACTTTGTGCGCACCGG
CACAACGTTCTCACCACGACTACGACCACCACCACCACCATCATCATTCG
CGTCACGCGCTACGTCACCGCATCGTCACGTCACAACCACAGCGATTTGG
TCCAGCCAGCGTGG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig89:197505..198268+

>mRNA_P-littoralis_Contig89.34.1 ID=mRNA_P-littoralis_Contig89.34.1|Name=mRNA_P-littoralis_Contig89.34.1|organism=Pylaiella littoralis U1_48|type=CDS|length=558bp|location=Sequence derived from alignment at P-littoralis_Contig89:197505..198268+ (Pylaiella littoralis U1_48)
ATGCACACGAGATGCGGAAAGGAAAAAAAAAGACACGAGTCATGTGTACG
AGCAGCACTTTGCACAAAGCAGCATTTTCCGAGGGGGGGGAGAGTTGACG
GTGCTTTTGTTGGCACGAGGAAGGCTGGAATGAAAGTGTTGGTGAGAACC
CGATATAGGGCTCGTTGGATTGATAAGTGGGGGACGGAATTATATCATGA
TTGCTGTGGGCAGCCAGCCTGGAAGTCTACACAAACAAAAAACGTCACGA
AACACACAAGAAATATTGAGTACTCTCGCTGCTTCGGAGCAATAACTGCC
GCGCATATTTTATCGTGCAATACCTCCTCTTCGGTAGAAATGTTCTTCTT
CTTTCTTGACCCACCTCCCCCCTCCCCCGCACCCCGTCCGGCAATCTCGT
TACCTCACCGTCACTTGCTTGCTTCGTCACTTTGTGCGCACCGGCACAAC
GTTCTCACCACGACTACGACCACCACCACCACCATCATCATTCGCGTCAC
GCGCTACGTCACCGCATCGTCACGTCACAACCACAGCGATTTGGTCCAGC
CAGCGTGG
back to top