mRNA_P-littoralis_Contig888.26.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig888.26.1
Unique NamemRNA_P-littoralis_Contig888.26.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig888.26.1 vs. uniprot
Match: A0A6H5KH17_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH17_9PHAE)

HSP 1 Score: 48.5 bits (114), Expect = 6.980e-5
Identity = 24/28 (85.71%), Postives = 24/28 (85.71%), Query Frame = 3 
Query:  204 YARKKGLDKKAGYITSADDSKLEELMDI 287
            YARK GLDK  GYI SADDSKLEELMDI
Sbjct:   31 YARKNGLDKMVGYIRSADDSKLEELMDI 58
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig888.26.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KH17_9PHAE6.980e-585.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig888contigP-littoralis_Contig888:79599..81935 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size288
Hectar predicted targeting categoryother localisation
Exons3
Cds size270
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791774.8777173-UTR-P-littoralis_Contig888:79598..796151680791774.8777173-UTR-P-littoralis_Contig888:79598..79615Pylaiella littoralis U1_48UTRP-littoralis_Contig888 79599..79615 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791774.8897295-CDS-P-littoralis_Contig888:79615..796821680791774.8897295-CDS-P-littoralis_Contig888:79615..79682Pylaiella littoralis U1_48CDSP-littoralis_Contig888 79616..79682 -
1680791774.9042678-CDS-P-littoralis_Contig888:80723..808441680791774.9042678-CDS-P-littoralis_Contig888:80723..80844Pylaiella littoralis U1_48CDSP-littoralis_Contig888 80724..80844 -
1680791774.9198806-CDS-P-littoralis_Contig888:81853..819351680791774.9198806-CDS-P-littoralis_Contig888:81853..81935Pylaiella littoralis U1_48CDSP-littoralis_Contig888 81854..81935 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig888.26.1prot_P-littoralis_Contig888.26.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig888 79616..81935 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig888.26.1

>prot_P-littoralis_Contig888.26.1 ID=prot_P-littoralis_Contig888.26.1|Name=mRNA_P-littoralis_Contig888.26.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=90bp
DILRVATHFEFCGNTQYRLRTRNRRAPGCRRCFRRRRRMREGRGHDRTPR
PPRVIVHWRATAALRDHDTRARKASTRKRATLHRPTTPN*
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mRNA from alignment at P-littoralis_Contig888:79599..81935-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig888.26.1 ID=mRNA_P-littoralis_Contig888.26.1|Name=mRNA_P-littoralis_Contig888.26.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2337bp|location=Sequence derived from alignment at P-littoralis_Contig888:79599..81935- (Pylaiella littoralis U1_48)
GACATTCTGAGGGTTGCTACGCACTTCGAATTTTGCGGGAACACCCAGTA
TAGGCTGAGAACGCGCAATCGGCGCGCACCAGGTTTGAACTTAAATTTTA
CGTTCCGCCGACGCACACCGGCTCTCTTCATCTTACGCGCCAAAAAGAAA
AACAGATGTACTTCGTGTGTCGCTAGACTGATTAGGTTTTTCCGCGGGCG
CGCGAATCCACGGCCCCCGCGAATCTGCTGGGCCCCTCCTATTTTTTCGC
CGGTGCGCAGCATTGTTCCTCGCAAGCCGTTTCACCAATGTCAGCTGACT
GCGGTTCAGGCTTCCGGGCAATTTCGAATGGGTGTAGACTAGTCTTACAC
GTGACAAATTCTTCGTCCTGCCTGAACTCTTCCTCACTGCCGCGAACATC
GATTGACTTATGCGCACATACTCTATCATTCGAAGATAACAATATGCGGA
CCATGACCATTGCTCCCATTCCCTGTCCTCCACAGCAGTACTTCCTCAAA
GAGGCAGCGTCCCACAAGAGGAAATGACGTAGAATACCACCCCTCTTGCG
CAAATATGAATCTACCGTGCTCGATGTTTCGCGCGCGAGTGGTTTCATAC
TTTCCACCACTATTAATAGCTGTTAATTTGCTTGCATGATTTGCACCCTT
GTTTTGGCGAGCGTTAAAGGCTGTATTTCAGCTGTTGTTTTTGTCACATT
GAAAACCGTTCCGTTCTCTCTATCCAGTACCTCCAGCTGTCCGTGCTCTT
CCAACACTTGCGTCGGGCGATTCCCGTGGTCACAAGCTAACTACCCTAAG
AAAAGGTATTCTAAAATAAAACACAATAAAAAACGGACCACGGAGCCGAA
AGATCAGCAAAGCAGTAGAAAGAAGCAGCAGAAGCATATTTAAAATATAA
CTCAACGCATGCCGTGCTCAAGAGGCGGGGAATGGACGGGGAGTTTGTGC
ATCTTAGGCGATAGGTGTCTCAATGGCAATCAGGTATAACCTCTTGTCGC
GTGAACACATGTGCATGCCTATTCATAAAAGCCGATGAATTTCGAATAGT
TCCCATTTTTATATCGTTCACACCGCAACGGCTACCGACAGGCTGCCGTC
GATGCTTTCGACGCCGGAGAAGGATGAGGGAGGGCCGAGGACACGATCGC
ACACCACGCCCACCACGAGTGATCGTGCATTGGAGAGCGACCGCTGCGCT
CCGAGACCACGAGTAAGCCTACTTCACCATAGAGTCCGGGGTGGGGGTGG
CGGAGCATCTCTCCACCGTGAAGTAATGTTGTTGAGGAACACACAGAGTT
CCTCATAGCTTTTTTAATAGGTGTCCCGCGTAGCACTAGCGTCGAGGGTT
GATGCCTTCATCGACATCTTCAACGGCAAGTGATAGGTGTTCGTATTGTC
GCAGTATGTAGAGGGGCCTGTCGCGTGACTATGTTCCGTGCTCTCCTTTT
TCCCCTGAAGTTTCCCGGCACCCGGGTACACTCTTTCTCTATACAGGGGT
GGTTGTTCCGAAGTCCGGAAATACCGGCAAACGCCCTGCCTCCCGGCGCA
GGTCGTGACGGAGTTTTTTTTTTTTAGCTTGATTGTTGAGTTTTCATGGG
CTAAAAACCCGCCACACTTGTGTTCTAACGGGATTGAACAAATATCGTAA
TTTGCCAATAAAATCAGTTATTATTGTTTTCAAATAAGTATGTTAAACAG
AGATATCGCACCAAAACAGCACATCGAAGACCAATATACTGTTTTATTCG
AGACAACTATTCTTTCGATTTCAAAATAGAGTGCGGCAAACTATTCCTCT
CATCATTGCCGCGAACTGTTTGTGGCGTTGTTGGTGGTGGTGCAGGGGGT
GGTGTTTGTGTCGTTTTTGTGTGATAAAATGTGCTGTGTAATGGCTGCAA
CGGATAGATTTCGTGACATATTATGCGGATGCCGGGGTGCGGAGTGCAGG
ATGGGGGCTCAGTGGTGAGTTTTGGGGCCCCGTGGAACGATTCTCGCAAC
AAATGATGCAATTAGCCAAAAACATAAATAACTCTGCAGCTATGTATCGA
CATATCTCGACGAGGCGATCACTAATATTGTTGTTTCACGTCCCAACGCG
ATTGAACAAAAAGGAGAGCACGGACCTACTTGTTTATACTCCGTATATTT
TTCCTCGCGCAATGTACACACTCTGTGCGCGTCGTTTGTCTCTTCCCACA
CGGCCCCATGTATGTGTATGTGTATATATTCAGGAAACTTCGGCCGCTCG
GAGTACGCGCGCAAGAAAGGCCTCGACAAGAAAGCGGGCTACATTACATC
GGCCGACGACTCCAAACTAGAAGAACTCATGGACATC
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Coding sequence (CDS) from alignment at P-littoralis_Contig888:79599..81935-

>mRNA_P-littoralis_Contig888.26.1 ID=mRNA_P-littoralis_Contig888.26.1|Name=mRNA_P-littoralis_Contig888.26.1|organism=Pylaiella littoralis U1_48|type=CDS|length=270bp|location=Sequence derived from alignment at P-littoralis_Contig888:79599..81935- (Pylaiella littoralis U1_48)
GACATTCTGAGGGTTGCTACGCACTTCGAATTTTGCGGGAACACCCAGTA
TAGGCTGAGAACGCGCAATCGGCGCGCACCAGGCTGCCGTCGATGCTTTC
GACGCCGGAGAAGGATGAGGGAGGGCCGAGGACACGATCGCACACCACGC
CCACCACGAGTGATCGTGCATTGGAGAGCGACCGCTGCGCTCCGAGACCA
CGATACGCGCGCAAGAAAGGCCTCGACAAGAAAGCGGGCTACATTACATC
GGCCGACGACTCCAAACTAG
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