mRNA_P-littoralis_Contig888.25.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig888.25.1
Unique NamemRNA_P-littoralis_Contig888.25.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig888.25.1 vs. uniprot
Match: A0A6H5JR14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR14_9PHAE)

HSP 1 Score: 254 bits (650), Expect = 3.400e-77
Identity = 124/185 (67.03%), Postives = 149/185 (80.54%), Query Frame = 1
Query:    1 MRFFEKWRCNLEEKTTLGDVTWKKHFITEYSWTDIRVSILGFVSMCRYLFEDDSRFKVSRLRDTPRYVNPRHHCQDVVENRFGHMRDGLGSHRNPTATQAKERAARGDLNRSLHGRSRANHNRNARRGQDYIASGYRARIMLPITEGERSATMRPSSWNTPAAVLFPRYISYDRPRAAPVVEGSA 555
            +RFF+KWR +L+EKTT+GD TWKKHFITE+SWTDIRV ILGFVSMCRYLFE+DSRFKVS  R  P ++N R+  QDV+E+ FGHMR GLGSHRNPTA QAKER ARGD+ R LHG  RAN+NRNAR+G+D++ASGYRA +MLP+ EGERS  +R  + ++  AVL P YIS   P A PV +GSA
Sbjct:  585 VRFFDKWRSSLQEKTTMGDETWKKHFITEFSWTDIRVCILGFVSMCRYLFEEDSRFKVSPRRPWPHFINQRNCGQDVIEHCFGHMRQGLGSHRNPTAAQAKERGARGDILRGLHGPCRANYNRNARKGRDFVASGYRAEVMLPVGEGERSVRIRARTKDSDEAVLSPWYISVAAPGATPVADGSA 769          
BLAST of mRNA_P-littoralis_Contig888.25.1 vs. uniprot
Match: A0A6H5JTX6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTX6_9PHAE)

HSP 1 Score: 186 bits (473), Expect = 2.460e-56
Identity = 104/175 (59.43%), Postives = 124/175 (70.86%), Query Frame = 1
Query:    1 MRFFEKWRCNLEEKTTLGDVTWKKHFITEYSWTDIRVSILGFVSMCRYLFEDDSRFKVSRLRDTPRYVNPRHHCQDVVENRFGHMRDGLGSHRNPTATQAKERAARGDLNRSLHGRSRANHNRNARRGQDYIASGYRARIMLPITEGERSATMRPSSWNTPAAVLFPRYISYDRP 525
            +RFF++WR +LE + TLGD  WK HFIT++SWTDIRV ILG VSMCRYLFE DSRFK+  L D P ++N R   QD+VE+R+GHM   LGSH NPTA QAKERAA+ DL RSLHG SRANH   AR+G+D+IASG R RIMLP      S   R   ++  A  L  RY+S D P
Sbjct:   72 LRFFDEWRASLEARPTLGD--WKAHFITDHSWTDIRVCILGTVSMCRYLFEKDSRFKIYPLSDVPHFINLRCIGQDIVEHRYGHMCQCLGSHCNPTAAQAKERAAQEDLQRSLHGISRANH---ARKGEDFIASGIRGRIMLP------SDRRRAVCYD--AGALEERYLSCDVP 233          
BLAST of mRNA_P-littoralis_Contig888.25.1 vs. uniprot
Match: A0A6H5K5I6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5I6_9PHAE)

HSP 1 Score: 152 bits (384), Expect = 2.060e-42
Identity = 87/179 (48.60%), Postives = 119/179 (66.48%), Query Frame = 1
Query:    1 MRFFEKWRCNLEEK---TTLGD-VTWKKHFITEYSWTDIRVSILGFVSMCRYLFEDDSRFKVSRLR-DTPRYVNPRHHCQDVVENRFGHMRDGLGSHRNPTATQAKERAARGDLNRSLHGRSRANHNRN--ARRGQDYIASG--YRARIMLPITEGERSATMRPSSWNTPAAVLFPRYI 510
            + FF+ W+  LE K   +  GD + WKKHFIT  SW D+R+SILGFVSMCRYLFED  RF++  L  +  R+++PR+  QD+ E+RF H+R  LG+HRNPTA +AK+R+A GDL R+ +G+ R N +RN  AR G D+   G   +  I+L +T+ E    +R    NTPA VL PRY+
Sbjct:  100 LEFFDDWQSTLERKHIPSGEGDKLGWKKHFITHQSWFDLRLSILGFVSMCRYLFEDPERFQIDSLSPNCRRFLSPRNCSQDICEHRFSHIRAALGTHRNPTAREAKKRSAVGDLCRATNGKRRRNASRNPNARSGGDFEEHGDSEKKAIILAVTKVETGKEVRAWCRNTPAEVLCPRYM 278          
BLAST of mRNA_P-littoralis_Contig888.25.1 vs. uniprot
Match: A0A6H5K5X1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5X1_9PHAE)

HSP 1 Score: 152 bits (385), Expect = 7.470e-40
Identity = 76/112 (67.86%), Postives = 90/112 (80.36%), Query Frame = 1
Query:  226 DVVENRFGHMRDGLGSHRNPTATQAKERAARGDLNRSLHGRSRANHNRNARRGQDYIASGYRARIMLPITEGERSATMRPSSWNTPAAVLFPRYISYDRPRAAPVVEGSASQ 561
            D+ E+R+GHM  GLGSH NPT  +AKERA RGDL RSLHG SRA HN+NAR+G+D+IASG R RI+LP+T+ ERSATMR  S N  +AV+FPRYIS D+P A PVV GSASQ
Sbjct:  530 DIEEHRYGHMHQGLGSHSNPTCAEAKERAERGDLQRSLHGVSRAKHNQNARKGEDFIASGIRGRIILPVTDAERSATMRAPSKNPASAVMFPRYISIDKPHADPVVGGSASQ 641          
BLAST of mRNA_P-littoralis_Contig888.25.1 vs. uniprot
Match: A0A6H5K630_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K630_9PHAE)

HSP 1 Score: 139 bits (351), Expect = 2.660e-39
Identity = 72/103 (69.90%), Postives = 83/103 (80.58%), Query Frame = 1
Query:  253 MRDGLGSHRNPTATQAKERAARGDLNRSLHGRSRANHNRNARRGQDYIASGYRARIMLPITEGERSATMRPSSWNTPAAVLFPRYISYDRPRAAPVVEGSASQ 561
            MR GLGSHRNPTATQAKERAARGDLNR L G SRANHNR +R+G D+IASG R +I+LP+T+ ERSATMR  S N  +AV+F RY+S  +PRA P VEG ASQ
Sbjct:    1 MRQGLGSHRNPTATQAKERAARGDLNRGLRGGSRANHNRTSRKGSDFIASGVRGQIILPVTDEERSATMRAPSRNPASAVMFSRYLSVVKPRADPTVEGGASQ 103          
BLAST of mRNA_P-littoralis_Contig888.25.1 vs. uniprot
Match: A0A6H5L2C2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2C2_9PHAE)

HSP 1 Score: 140 bits (352), Expect = 6.460e-39
Identity = 70/101 (69.31%), Postives = 83/101 (82.18%), Query Frame = 1
Query:  223 QDVVENRFGHMRDGLGSHRNPTATQAKERAARGDLNRSLHGRSRANHNRNARRGQDYIASGYRARIMLPITEGERSATMRPSSWNTPAAVLFPRYISYDRP 525
            +D VE+RFGH R GLGSHRNPTATQAKERAARGDLNR L G SRANHNR +R+G D+IASG R +I+LP+T+ ERSATMR  S N  +AV+FPRY+S  +P
Sbjct:   66 RDPVEHRFGHTRQGLGSHRNPTATQAKERAARGDLNRGLQGGSRANHNRTSRKGNDFIASGVRGQIILPVTDEERSATMRAPSRNPASAVMFPRYLSVVKP 166          
BLAST of mRNA_P-littoralis_Contig888.25.1 vs. uniprot
Match: A0A6H5JS87_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS87_9PHAE)

HSP 1 Score: 137 bits (346), Expect = 3.870e-38
Identity = 68/100 (68.00%), Postives = 83/100 (83.00%), Query Frame = 1
Query:  226 DVVENRFGHMRDGLGSHRNPTATQAKERAARGDLNRSLHGRSRANHNRNARRGQDYIASGYRARIMLPITEGERSATMRPSSWNTPAAVLFPRYISYDRP 525
            D+VE+R+ HMR  LGS+ NPTA QAKERAARGDL RSLHG SRANHN+N R+G+++IASG R RIMLP+T+ ERSATMR  S N+ +AV+FPRYIS  +P
Sbjct:   57 DIVEHRYAHMRQSLGSNSNPTAAQAKERAARGDLYRSLHGVSRANHNKNERKGEEFIASGIRGRIMLPVTDAERSATMRAPSRNSVSAVMFPRYISIHKP 156          
BLAST of mRNA_P-littoralis_Contig888.25.1 vs. uniprot
Match: A0A6H5KB63_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB63_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 1.170e-35
Identity = 65/91 (71.43%), Postives = 74/91 (81.32%), Query Frame = 1
Query:  253 MRDGLGSHRNPTATQAKERAARGDLNRSLHGRSRANHNRNARRGQDYIASGYRARIMLPITEGERSATMRPSSWNTPAAVLFPRYISYDRP 525
            MR  LGSH NP A QAKER ARGDL RSLHG SRANHN+NAR+G+D+IASG R RIMLP+T+ ERSATMR  S N  +AV+FPRYIS D+P
Sbjct:    1 MRQSLGSHSNPIAAQAKERTARGDLQRSLHGVSRANHNKNARKGEDFIASGIRGRIMLPVTDAERSATMRAPSRNPVSAVMFPRYISIDKP 91          
BLAST of mRNA_P-littoralis_Contig888.25.1 vs. uniprot
Match: A0A6H5K6I9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6I9_9PHAE)

HSP 1 Score: 122 bits (306), Expect = 4.560e-30
Identity = 66/108 (61.11%), Postives = 80/108 (74.07%), Query Frame = 1
Query:  223 QDVVENRFGHMRDGLGSHRNPTATQAKERAARGDLNRSLHGRSRANHNRNARRGQDYIASGYRARIMLPITEGERSATMRPSSWNTPAAVLFPRYISYDRPRAAPVVE 546
            Q ++E+RF  +R GLG+ RNPTA QAKER+ RGDLNR LHG SRAN NRNAR G D+I S YR+RIML +T+ E +  +R  S N+P AVL PRYIS +   AAPVVE
Sbjct:  237 QIILEHRFKDVRAGLGTLRNPTAAQAKERSVRGDLNRGLHGGSRANFNRNARSGNDFIDSDYRSRIMLAVTQAEAAENVRARSRNSPNAVLCPRYISVEPLAAAPVVE 344          
BLAST of mRNA_P-littoralis_Contig888.25.1 vs. uniprot
Match: A0A6H5K7Z3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Z3_9PHAE)

HSP 1 Score: 119 bits (298), Expect = 7.590e-28
Identity = 65/155 (41.94%), Postives = 90/155 (58.06%), Query Frame = 1
Query:    1 MRFFEKWRCNLEEKTTLGDVTWKKHFITEYSWTDIRVSILGFVSMCRYLFEDDSRFKVSRLRDTPRYVNPRHHCQDVVENRFGHMRDGLGSHRNPTATQAKERAARGDLNRSLHGRSRANHNRNARRGQDY-IASGYRARIMLPITEGERSATMR 462
            + FF+ W+ +LE     G   W  HFIT+YSWTD+R +ILGFV+MCRY+F+D+       L    R++ PR   QD++E+RF H+R G G+H+NPTA QA E A  GD  R  HG  R N +R+A  G  + +      R   P    ER+  +R
Sbjct:  509 LEFFDSWQVSLEAH--FGPKEWANHFITDYSWTDMRTTILGFVAMCRYVFKDED------LVSGGRFLYPRMFSQDILEHRFAHIRSGRGTHKNPTAMQAIEAARAGDTARMFHGTRRRNSSRSA--GMAFQLEDSQGVRAAFPANASERAQVVR 653          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig888.25.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
A0A6H5JR14_9PHAE3.400e-7767.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTX6_9PHAE2.460e-5659.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5I6_9PHAE2.060e-4248.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5X1_9PHAE7.470e-4067.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K630_9PHAE2.660e-3969.90Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L2C2_9PHAE6.460e-3969.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JS87_9PHAE3.870e-3868.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KB63_9PHAE1.170e-3571.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6I9_9PHAE4.560e-3061.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7Z3_9PHAE7.590e-2841.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig888contigP-littoralis_Contig888:78891..79598 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size561
Hectar predicted targeting categoryother localisation
Exons2
Cds size561
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791775.2185242-CDS-P-littoralis_Contig888:78890..792261680791775.2185242-CDS-P-littoralis_Contig888:78890..79226Pylaiella littoralis U1_48CDSP-littoralis_Contig888 78891..79226 -
1680791775.2290068-CDS-P-littoralis_Contig888:79373..795981680791775.2290068-CDS-P-littoralis_Contig888:79373..79598Pylaiella littoralis U1_48CDSP-littoralis_Contig888 79374..79598 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig888.25.1prot_P-littoralis_Contig888.25.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig888 78891..79598 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig888.25.1

>prot_P-littoralis_Contig888.25.1 ID=prot_P-littoralis_Contig888.25.1|Name=mRNA_P-littoralis_Contig888.25.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=187bp
MRFFEKWRCNLEEKTTLGDVTWKKHFITEYSWTDIRVSILGFVSMCRYLF
EDDSRFKVSRLRDTPRYVNPRHHCQDVVENRFGHMRDGLGSHRNPTATQA
KERAARGDLNRSLHGRSRANHNRNARRGQDYIASGYRARIMLPITEGERS
ATMRPSSWNTPAAVLFPRYISYDRPRAAPVVEGSASQ
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mRNA from alignment at P-littoralis_Contig888:78891..79598-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig888.25.1 ID=mRNA_P-littoralis_Contig888.25.1|Name=mRNA_P-littoralis_Contig888.25.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=708bp|location=Sequence derived from alignment at P-littoralis_Contig888:78891..79598- (Pylaiella littoralis U1_48)
ATGCGTTTTTTCGAGAAGTGGCGGTGCAATCTGGAGGAGAAGACGACGCT GGGCGACGTCACCTGGAAGAAGCACTTCATCACGGAGTACTCGTGGACCG ACATCCGGGTGTCCATCCTTGGCTTCGTCAGTATGTGCCGATACTTGTTC GAGGATGATTCGAGGTTCAAGGTCTCCCGCCTGCGCGACACGCCCCGCTA CGTCAACCCGCGGCACCATTGCCAGGTATCATGTGCACACAGCGTACTAT GTTGTGGCTGATTCTGCCTGTGGGTCTAGTGTGCGTCCGGTCCGACTCCG AGGAGCATTTTCTGAAATTGCGTCGACCTCTCCCCCCCCTGTTTTCCACC ACTTCGCCTTCTAACCCCACAGGATGTCGTGGAGAACCGCTTCGGGCACA TGCGCGACGGCCTTGGGTCGCACAGAAACCCGACGGCTACGCAAGCGAAG GAGAGGGCAGCACGGGGGGACCTGAATCGTAGTCTGCACGGGCGTTCCCG CGCAAACCACAATCGGAATGCGCGGAGAGGACAGGACTACATCGCGTCCG GATACCGGGCACGGATCATGCTCCCAATAACGGAAGGAGAGCGGTCTGCT ACCATGCGGCCTAGCTCCTGGAACACTCCCGCAGCTGTTCTGTTCCCGCG GTACATCAGCTACGACAGACCCCGCGCGGCCCCTGTGGTAGAGGGTAGTG CATCCCAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig888:78891..79598-

>mRNA_P-littoralis_Contig888.25.1 ID=mRNA_P-littoralis_Contig888.25.1|Name=mRNA_P-littoralis_Contig888.25.1|organism=Pylaiella littoralis U1_48|type=CDS|length=561bp|location=Sequence derived from alignment at P-littoralis_Contig888:78891..79598- (Pylaiella littoralis U1_48)
ATGCGTTTTTTCGAGAAGTGGCGGTGCAATCTGGAGGAGAAGACGACGCT
GGGCGACGTCACCTGGAAGAAGCACTTCATCACGGAGTACTCGTGGACCG
ACATCCGGGTGTCCATCCTTGGCTTCGTCAGTATGTGCCGATACTTGTTC
GAGGATGATTCGAGGTTCAAGGTCTCCCGCCTGCGCGACACGCCCCGCTA
CGTCAACCCGCGGCACCATTGCCAGGATGTCGTGGAGAACCGCTTCGGGC
ACATGCGCGACGGCCTTGGGTCGCACAGAAACCCGACGGCTACGCAAGCG
AAGGAGAGGGCAGCACGGGGGGACCTGAATCGTAGTCTGCACGGGCGTTC
CCGCGCAAACCACAATCGGAATGCGCGGAGAGGACAGGACTACATCGCGT
CCGGATACCGGGCACGGATCATGCTCCCAATAACGGAAGGAGAGCGGTCT
GCTACCATGCGGCCTAGCTCCTGGAACACTCCCGCAGCTGTTCTGTTCCC
GCGGTACATCAGCTACGACAGACCCCGCGCGGCCCCTGTGGTAGAGGGTA
GTGCATCCCAG
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