mRNA_P-littoralis_Contig887.19.8 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig887.19.8 vs. uniprot
Match: D8LDS4_ECTSI (Pseudouridylate synthase, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDS4_ECTSI) HSP 1 Score: 942 bits (2435), Expect = 0.000e+0 Identity = 528/721 (73.23%), Postives = 563/721 (78.09%), Query Frame = 2
Query: 317 MIGPELPPAPPPAPIYDADGKELSKPTKRKVAIVVGYVGTKFHGWQQSSDAQNVRTVEGELETALWKAGAIADSNYGDLNKIGWGRTSRTDKGVHASKTVAAAKLLLPQETFTKAGMSQYGKDKLNEQLPDDIRCFSVSKVPKSFRGREECTLREYTYYLPKELLPNDEALEKFRALLRLFVGTHSFHNYASTKGRQLKEVRKRVQASIDLKKAGGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESGSK----KRWLSKEEWRTYRHKKKSTVDQKAEDAWFGK-----------------------------SKEEGEEGSAAVAAVEVAGGEQGSXXXXXXXXXXXXXXXXXXXXXTAKMDVDEAANGAPAVAKGGDGVESVKWEAAAAXXXXXXXXXDEGGEGEAPDDGPEKQILLRELRTSIYRCEALDDIVSYTRPGQDTPDEFVRIDIRGKAFVYNQIRLMIGGALGEARGDLMSGFVEAALKTPYKLRVPLAPAEGLVLESQAFTRHTNALVLDPRDLGSIGGTLAVWGETKQGNGMQGTGRLQTLLTLDQVQEAARWSDEHILPAVADAWKARGTANLFLEAVAKFFVGQQQEAPLLKAIADNLSEISEGERRAEEKYNKFRVLARERGVTKYKDLLPKNIATGIICKFRLLPGNKVSAMQRGVVMRMDKGELPVLAEVDEILEFIEKVGVDAVALDGGFVPPDVEG 2380
MIGPELPPAPPP +YDADG ELSKPTKRKVAIVVGYVGT FHGWQQS+DAQNVRTVEGELETALWKAGAIADSNYGDLNKIGWGRTSRTDKGVHASKTVAAAKLLLPQETFT GMSQYGKDKLNE+LPDDIRCFSVSKVPKSFRGREECTLREYTYYLP+ELLP+DEAL KFR LL+LFVGTHSFHNYASTKGRQLKEVRKRV+ASIDLKK+GG XXXXXXXXXXXX +RW+SK+EWRTYR+KKKS DQKA+DAWFGK + G+EG + + + GG G A A GA V K DG XXX G GE D+GPEKQILLRELRTSIYRCEALD IVSYTRPGQDTPDEFVRIDIRGKAFVYNQIRLMIGGALGEARGDL SGFVEAALKTPYKLRVPLAPAEGLVLESQAFTRHTNALVLDPRDLGSIGGTLAVWGE+K+GN M+ TGRLQTLLT +Q++EAARWSD+HILPAVADAW+ RGTA LFLEAV KFFVGQQQE PLLKAIA+NLSEISE ERRAEEKYNKFRVLA+ERG TKYKDLLPK+IATGIICKFRLLPGNKVSA+QRGVV RM+KGELP LAEV+EIL F+EK+GVD VALDGGFV PD EG
Sbjct: 1 MIGPELPPAPPPPTLYDADGNELSKPTKRKVAIVVGYVGTAFHGWQQSTDAQNVRTVEGELETALWKAGAIADSNYGDLNKIGWGRTSRTDKGVHASKTVAAAKLLLPQETFTATGMSQYGKDKLNEKLPDDIRCFSVSKVPKSFRGREECTLREYTYYLPRELLPDDEALGKFRELLKLFVGTHSFHNYASTKGRQLKEVRKRVKASIDLKKSGGKPAPGPEKAAGGAVSVSAPGSEXXXXXXXXXXXXXXXXXXXXXRRWVSKDEWRTYRYKKKSAADQKADDAWFGKXXXXXXXXXXXXXXXXXXXXXXXXXAGAEQQASGDEGPESASPRSIEGGTSGDAVGSADAGSAAAVAAAVTPKDVAGAGGXXXAEGA--VVKS-DGXXXXXXXXXXXXXXAPGAQEAAGVGGE--DEGPEKQILLRELRTSIYRCEALDGIVSYTRPGQDTPDEFVRIDIRGKAFVYNQIRLMIGGALGEARGDLWSGFVEAALKTPYKLRVPLAPAEGLVLESQAFTRHTNALVLDPRDLGSIGGTLAVWGESKEGNAMKTTGRLQTLLTREQLREAARWSDKHILPAVADAWETRGTAKLFLEAVEKFFVGQQQEEPLLKAIAENLSEISESERRAEEKYNKFRVLAKERGSTKYKDLLPKSIATGIICKFRLLPGNKVSAIQRGVVERMNKGELPPLAEVEEILAFLEKIGVDQVALDGGFVAPDFEG 716
BLAST of mRNA_P-littoralis_Contig887.19.8 vs. uniprot
Match: A0A6H5L6M3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6M3_9PHAE) HSP 1 Score: 722 bits (1863), Expect = 2.000e-245 Identity = 457/787 (58.07%), Postives = 501/787 (63.66%), Query Frame = 2
Query: 119 CYIRGYGHAFGTSPRCMLARLTSKTTARGLQSGLARHPR---SSTQSRGSISRRSITFQLKGERRSRAPMIGPELPPAPPPAPIYDADGKELSKPTKRKVAIVVGYVGTKFHGWQQSSDAQNVRTVEGELETALWKAGAIADSNYGDLNKIGWGRTSRTDKGVHASKTVAAAKLLLPQETFTKAGMSQYGKDKLNEQLPDDIRCFSVSKVPKSFRGREECTLREYTYYLPKELLPNDEALEKFRALLRLFVGTHSFHNYASTKGRQLKEVRKRVQASIDLKKAGGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESGSKKR-WLSKEEWRTYRHKKKSTVDQKAEDAWFGKSKEE-----------------------------GEEGSAAVAAVEVAGGEQGSXXXXXXXXXXXXXXXXXXXXXTAKMDVDEAANGAPAVAKGGDGVESVKWEAAAAXXXXXXXXXDEGGEGEAPDDGPEKQILLRELRTSIYRCEALDDIVSYTRPGQDTPDEFVRIDIRGKAFVYNQIRLMIGGALGEARGDLMSGFVEAALKTPYKLRVPLAPAEGLVLESQAFTRHTNALVLDPRDLGSIGGTLAVWGETKQGNGMQGTGRLQTLLTLDQVQEAARWSDEHILPAVADAWKARGTANLFLEAVAKFFVGQQQEAPLLKAIADNLSEISEGERRAEEKYNKFRVLARERGVTKYKDLLPKNIATGIICKFRLLPGNKVSAMQRGVVMRMDKGELPVLAEVDEILEFIEKVGVDAVALDGGFVPPDVEG 2380
C++RGY + +P CML+R + + + +GL+ P SS RG S L G R+ RAPMIGPELPPAPPP +YDADG ELSKPTKRKVAIVVGYVGT FHGWQQS+DAQNVRTVEGELETALWKAGAIADSNYGDLNKIGWGRTSRTDKGVHASKTVAAAKLLLPQETFT AGMSQYGKDKLNE LPDDIRCFSVSKVPKSFRGREECTLREYTYYLP+ELLP+D +L KFR LL+LFVGTHSFHNYASTKGRQLKEVRKRV+ASIDLKK+GG XXXXXXXXXXXXXXXXXXXX ESGSKKR W+SK+EWRTYR+KKKST DQKA+DAWFGK G+EG + + V GG G A A+ EG GE D+GPEKQILLRELRTSI GGTLAVWG++K+GN M+ TGRLQTLLT +Q++EA RWS EHILPAVADAW+ RGTA LFLEAV KFFVGQQQE PLLKAIA+NLSEISE ERRAEEKYNKFRVLA+ERG TKYKDLLPK+IATGIICKFRLLPGNKVSA+QRGVV RM+KGELP LAEV+EIL FIEK+GVD VALDGGFV PDV+G
Sbjct: 21 CFVRGYAYV---APSCMLSRFSQQRHRQLQSAGLSILPLNRCSSGSKRGGTS-------LTGVRKPRAPMIGPELPPAPPPPTLYDADGNELSKPTKRKVAIVVGYVGTAFHGWQQSTDAQNVRTVEGELETALWKAGAIADSNYGDLNKIGWGRTSRTDKGVHASKTVAAAKLLLPQETFTAAGMSQYGKDKLNENLPDDIRCFSVSKVPKSFRGREECTLREYTYYLPRELLPDDGSLGKFRELLKLFVGTHSFHNYASTKGRQLKEVRKRVKASIDLKKSGGKPAQEAGGTAXXXXXXXXXXXXXXXXXXXX----ESGSKKRRWVSKDEWRTYRYKKKSTADQKADDAWFGKQSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGDEGPESASPRSVEGGTSGDAVGTADAGSVAAVAAVVTPKDVASXXXXXXXXXXXXXXXXXXXXXXXXX---ASVVSAPGAQEAEGVGGE--DEGPEKQILLRELRTSI------------------------------------------------------------------------------------------------------GGTLAVWGDSKEGNAMKTTGRLQTLLTREQLREAERWSYEHILPAVADAWETRGTAKLFLEAVEKFFVGQQQEEPLLKAIAENLSEISESERRAEEKYNKFRVLAKERGSTKYKDLLPKSIATGIICKFRLLPGNKVSAIQRGVVERMNKGELPPLAEVEEILAFIEKIGVDQVALDGGFVAPDVKG 686
BLAST of mRNA_P-littoralis_Contig887.19.8 vs. uniprot
Match: A0A835YLA7_9STRA (Pseudouridine synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLA7_9STRA) HSP 1 Score: 323 bits (827), Expect = 1.510e-93 Identity = 265/729 (36.35%), Postives = 363/729 (49.79%), Query Frame = 2
Query: 374 GKELSKPTKRKVAIVVGYVGTKFHGWQQSSDAQNVRTVEGELETALWKAGAIADSNYGDLNKIGWGRTSR--------------TDKGVHASKTVAAAKLLLPQETFTKAGMSQYGKDKLNEQLPDDIRCFSVSKVPKSFRGREECTLREYTYYLPKELLPNDEALEKFRALLRLFVGTHSFHNYASTKGRQLKEVRKRVQASIDLKKAGGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESGSKKRWLSKEEWRTYRHKKKSTVDQK--AEDAWFGKSKEEGEEGSAAVAAVEVAGGEQGSXXXXXXXXXXXXXXXXXXXXXTAKMDVDEAANGAPAVAKGGDGVESVKWEAAAAXXXXXXXXXDEGGEGEAPDDGPEKQILLRELRTSIYRCEALDDIVSYTRPGQDTPDEFVRIDIRGKAFVYNQ------IRLMIGGALGEARGDLMSGFVEAALKTPYKLRVPLAPAEGLVLESQAFT--RHTNALVLDPRDLGSIGGTLAVWGETKQGNGMQGTGRLQTLLTLDQVQEAARWSDEHILPAVADAWKARGTANLFLEAVAKFFV--------------------GQQQEAPLLKAIADNLSEISEGERRAEEKYNKFRVLARERGVTKYKDLLPKNIATGIICKFRLLPGNKVSAMQRGVVMRMDKGE---------------------LPVLAEVDEILEFIEKVGVDAVALDGGFVP 2365
G+E KRKVA+V+GYVGT F G Q ++ VRTVE E+ETAL+ AG I +SNYGDL+KIGW RTSR TDKGVHA+KTV AKLL+ Q F AG++ K +N LP D+R FSV KVPK FRGR EC+ R+Y YYLP LL +D+A KF LLRLF GTHSFHN+ S KGR+L++ RK V K+W + + R R + DQ +A G+S + +V + S XXXXXXXXXXXXXXXXXXXX + V+E E + E AAA GGEG A +G + +++E+ +SIYR E +S +P+ F+R+++RG++F+YNQ IRLM+G AL EA G + +G+V A L+TP L PL P +GL+L SQ FT + NA VL+P+ L +GGT+ + G + GRLQ L+ D V+EA + D ILP +A +W G + +A LL+A+ + E + K +R A ER K+ LPK T +I +F +LPGNKV A+++ +V+RM + LP LA +D++L +E++G++ +A +GGF P
Sbjct: 7 GEEKGGVAKRKVALVLGYVGTDFSGLQIDRNS-GVRTVESEMETALFNAGVIKESNYGDLSKIGWSRTSRIPLDGFVNIAYASRTDKGVHAAKTVVVAKLLVDQTQFCAAGLNAPLKAAINACLPPDLRVFSVCKVPKGFRGRGECSWRDYEYYLPASLLTDDKATAKFGELLRLFEGTHSFHNFISMKGRELRQTRKEVTL------------------------------------------------KKWAAYD--RRNRTAAAAADDQSDHVPEASVGQSDDN----------ADVVSQSEASDXXXXXXXXXXXXXXXXXXXXASNEPVEEVQE------------EGDEGEGAAA-----------GGEGAAGGEGVVMRNIMKEMTSSIYRMELEGAPLSVG----GSPEPFLRVNVRGQSFLYNQSFLYDQIRLMVGAALAEANGVVPAGWVAAGLETPCTLHFPLVPPQGLLLVSQGFTASKSGNAAVLEPKHLSEVGGTVTQY---VGGPRLLCKGRLQALMGEDDVKEAEAFRDAKILPRIASSWMEINAXXXXXXXXXXXXXXXXSGQDWLAWARENNSLRPGAETDA-LLEAVQSYVGASQERQDAEATKEAFYRTRAFERESALLKECLPKGFVTAVISRFNMLPGNKVMAVEKALVIRMRQDSCQVTXXXXXXXXXXXXXTDPALPRLATIDQLLAAVERIGLETIAAEGGFQP 643
BLAST of mRNA_P-littoralis_Contig887.19.8 vs. uniprot
Match: W7U6V3_9STRA (Pseudouridylate synthase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U6V3_9STRA) HSP 1 Score: 196 bits (499), Expect = 2.980e-48 Identity = 221/741 (29.82%), Postives = 313/741 (42.24%), Query Frame = 2
Query: 365 DADGKELSKPTKRKVAIVVGYVGTKFHGWQQSSDAQN---VRTVEGELETALWKAGAIADSNYGDLNKIGWGRTSRTDKGVHASKTVAAAKLLLPQETFT--KAGMSQYGKDKLNEQLPDDIRCFSVSKVPKSFRGREECTLREYTYYLPKELL------------PNDEAL-EKFRALLRLFVGTHSFHNYASTKGR----QLKEVRKRVQASIDLKKAGG------TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESGSKKRWLSKEEWRT--------------------------YRHKKKSTVDQKAE-DAWFGKSKEEGEEGSAAVAAVEVAGGEQGSXXXXXXXXXXXXXXXXXXXXXTAKMDVDEAANGAPAVAKGGDGVESVKWEAAAAXXXXXXXXXDEGGEGEAPDDGPEKQILLRELRTSIYRCEALDDIVSYTRPGQDTPDEFVRIDIRGKAFVYNQIRLMIGGALGEARGDLMSGFVEAALKTPYKLRVPLAPAEGLVLESQAFTRHT-NALVLDPRDLGSIGGTLAVWGETKQGNGMQGTGRLQTLLTLDQVQEAARWSDEHILPAVADAWKARGTANLFLE---AVAKFFVGQQQEAPLLKAIA---DNLSEISEGERRAEEKYNKF-----------------------RVLARERGVTK-YKDLLPKNIATGIICKFRLLPGNKVSAMQRGVVMRMDKGELPVLAEVDEILEFIEKVG 2329
D K L KR++A+V+GYVGTK+ G Q+S V T+E LE AL+ AG I +SN+GDL+KIGW R SRTDKGVHA++ V +AKL L + S+ ++N LPDDIR S +K KSFR R+ + REY Y +P ELL + EAL +F LL F GTH+FHN+ K R +LK +A + + GG XXXXXXXXXXX EEW ++ + S +Q+A D KSKEE AGGE G + V+ A G PA DGV + W D Q +L+ +RT+IYRCE R Q +FV + G +F+YNQIRL++GGA+ A G + AL +PY + PLAPAEGL L F R + N +V+D DL + A ++ LL+ + Q A + E IL + AW T L E F + ++ EA L K ++++++ E + A E + + +V A E+ + + Y+ +P+ AT +I +FRL PG +V + RG+ + M +G +P A +E+ +E G
Sbjct: 108 DVGSKPLRDRKKRRMALVIGYVGTKYSGLQKSEPGPGEAEVITIESVLEKALFDAGYIRESNFGDLDKIGWARCSRTDKGVHAARNVVSAKLELWVDDMEGDSPNWSERAVKEINACLPDDIRVHSCAKATKSFRPRDAVSFREYVYIVPLELLRPFPGTGRAVADESSEALIARFCDLLVRFQGTHNFHNFTKIKSRDLIRRLKAKAGSSRAWVHNNQRGGREGEAIAAGGEASTGEDGTGRAGEKGGEYXXXXXXXXXXXXXXXXXXXXXXEEWTAPNVGGLSTAKVDGVRRFNTEVVLNPLFQILRASPQNQRARNDPDRRKSKEE--------RGWVGAGGEGGRQKDD--------------------LRVEHVAIGDPA-----DGVTTALW------------------------DLTRYQGVLKMVRTNIYRCEG--------RALQVGGKDFVAVTFHGSSFLYNQIRLLVGGAIAVASGLFPEAALPMALDSPYLIYSPLAPAEGLFLRHITFGRKSKNPVVMDEADLPTAAEMAAA-----------NCPQVYALLSKEAGQRADNFERERILTEITGAW----TPELLEEWRRYARAFLIDEEVEAALSKKFRQWRESMAKLEEA-KAARELFRRQSMATWMKREGAEGEMSLGGAGEDKVGALEKEILRSYRRWMPQRFATDLIIRFRLKPGKQVGNVLRGLAVGMVEGRVPTDATSEELFALMEAEG 767
BLAST of mRNA_P-littoralis_Contig887.19.8 vs. uniprot
Match: A0A6A3ZI15_9STRA (PseudoU_synth_1 domain-containing protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3ZI15_9STRA) HSP 1 Score: 189 bits (480), Expect = 2.940e-47 Identity = 185/679 (27.25%), Postives = 289/679 (42.56%), Query Frame = 2
Query: 386 SKPTKRKVAIVVGYVGTKFHGWQQSSDAQNVRTVEGELETALWKAGAIADSNYGDLNKIGWGRTSRTDKGVHASKTVAAAKLLLPQETFTK--AGMSQYGKDKLNEQLPDDIRCFSVSKVPKSFRGREECTLREYTYYLPKELLPN------------DEALEKFRALLRLFVGTHSFHNYASTKGRQLKEVRKRVQASIDLKKAGGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESGSKKRWLSKEEWRTYRHKKKSTVDQKAEDAWFGKSKEEGEEGSAAVAAVEVAGGEQGSXXXXXXXXXXXXXXXXXXXXXTAKMDVDEAANGAPAVAKGGDGVESVKWEAAAAXXXXXXXXXDEGGEGEAPDDGPEKQILLRELRTSIYRCEALDDIVSYTRPGQDTPD----EFVRIDIRGKAFVYNQIRLMIGGALGEARGDLMSGFVEAALKTPYKLRVPLAPAEGLVLESQAF--TRHTNALVLDPRDLGSIGGTLAVWGETKQGNGMQGTGRLQTLLTLDQVQEAARWSDEHILPAVADAWKARGTANLFLEAVAKFFVGQQ--QEAPLLKAIADNLSEISEGERRAEEKY-NKFRVLARERGVTKYKDLLPKNIATGIICKFRLLPGNKVSAMQRGVVMRMDKGELPVLAEVDEILEFIEKVGVDAVALDG 2353
+K KRKVAIV GY+GT +HG Q + NV T+E E+ A++KAGA+ +SN+ DL KI W R+SRTDKGVHAS V + KLL+ +E +G + K+ LN LPD+IR FS ++V K F R+ C LREY Y++P L + DEA+ +F LR + G H FHN+ ++ K KR Q ++ ++ ++T D +A E+ ++G A +D+ + ES ++E ++G +++L R R SIY C G PD +R+ I G+AF+ NQIR M+GGAL A + +AAL T +RVP+APAEGLVL S +F HT +L D TLA K+ + + LL + +E ++ +E I V ++W + + + + + Q E L A+ + L ++ + + Y + R+ E+G + LLPK AT + ++ + PG S ++R V + G++P+ A+ DEI+ +I+ G +A+A +G
Sbjct: 37 AKLVKRKVAIVSGYMGTGYHGLQMND---NVETIEDEIRRAIFKAGAMRESNFEDLGKIDWARSSRTDKGVHASCIVFSGKLLIDEENKVDPASGRVKGLKEALNASLPDNIRVFSCTRVNKRFSARKNCVLREYEYFMPLSFLKDSIIGSDGADLDTDEAVAEFCRALRRYEGVHDFHNFTRSRSYFYKMQAKRNQWKMEHQRNAAEA-----------------------------------------------------QATADDDVVEA------EDADDGDAXXXXXPTT--------------------------------IDDYSE------------ESSQFE---------------------DEEGLTRKLLTRHRR-SIYSCS-----------GSLIPDFCGEPHLRVHIVGQAFLLNQIRCMVGGALAVATKGMSRVAFDAALLTNRIVRVPIAPAEGLVLLSSSFGGKLHTVSLYPDSNT------TLA-----KERKDLVH----RILLNRHEDEEMEKFREEVIYKEVGNSWNMEEKMDRWRAYLERCYEANQLLDEDELSIALYE-LDQVKLARKNKNQSYVEQNRIELAEKG--RQGALLPKQFATKLCVRYSVAPGIFTSDLRRAVARHLKSGKIPLTADEDEIMAYIDNYGPEALAHEG 558
BLAST of mRNA_P-littoralis_Contig887.19.8 vs. uniprot
Match: A0A833SRU5_PHYIN (tRNA pseudouridine synthase n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833SRU5_PHYIN) HSP 1 Score: 180 bits (457), Expect = 2.710e-44 Identity = 182/680 (26.76%), Postives = 282/680 (41.47%), Query Frame = 2
Query: 386 SKPTKRKVAIVVGYVGTKFHGWQQSSDAQNVRTVEGELETALWKAGAIADSNYGDLNKIGWGRTSRTDKGVHASKTVAAAKLLLPQETFTK--AGMSQYGKDKLNEQLPDDIRCFSVSKVPKSFRGREECTLREYTYYLPKELL------------PNDEALEKFRALLRLFVGTHSFHNYASTKGRQLKEVRKRVQASIDLKKAGGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESGSKKRWLSKEEWRTYRHKKKSTVDQKAEDAWFGKSKEEGEEGSAAVAAVEVAGGEQGSXXXXXXXXXXXXXXXXXXXXXTAKMDVDEAANGAPAVAKGGDGVESVKWEAAAAXXXXXXXXXDEGGEGEAPDDGPEKQILLRELRTSIYRCEALDDIVSYTRPGQDTPD----EFVRIDIRGKAFVYNQIRLMIGGALGEARGDLMSGFVEAALKTPYKLRVPLAPAEGLVLESQAF--TRHTNALVLDPRDLGSIGGTLAVWGETKQGNGMQGTGRLQTLLTLDQVQEAARWSDEHILPAVADAWKARGTANLFLEAVAKFFVGQQQ-EAPLLKAIADNLSEISEGERRAEEKYNKFRVLARERGVTKYKD---LLPKNIATGIICKFRLLPGNKVSAMQRGVVMRMDKGELPVLAEVDEILEFIEKVGVDAVALDG 2353
+K KRKVAIV GY+GT +HG Q + NV+T+E ++ A+++AGA+ +SN+ DL KI W R+SRTDKGVHA V + KLL+ +E +G K+ LN LP++IR FS ++V K F R+ C LREY Y++P L DEA+ +F LR + G H FHN+ ++ K VQA KA H ++S + ++DA + E+ EE S +D+ + ES ++E D+ + LL R SIY C G PD +RI I G+AF+ NQIR M+GGAL A + +AAL T +RVP+APAEGLVL S +F HT +L DP + + V + LL + +E ++ DE I +A +W + + + + + + + L A+ L E+ + + + K F V G+T+Y LLPK T + ++ + PG S ++RG+++ + G++P+ A+ + I+ I+ G + +A +G
Sbjct: 45 AKLVKRKVAIVTGYMGTGYHGLQLND---NVKTIEDDIRNAIFQAGAMRESNFEDLGKIDWARSSRTDKGVHAGCIVFSGKLLIDEENKVDPISGRVHELKEALNASLPENIRVFSCTRVSKRFSARKNCVLREYEYFMPLSFLRGSLIGSDGEDFDTDEAVAEFCRALRRYEGVHDFHNFTRSRSYFYK-----VQAKKKHYKA------------------------------------------------------HYRRSVAE--SDDAGVEDNDEDAEEESG----------------------------------------IDDYSE------------ESSQFE----------------------DEEELTRKLLPRHRRSIYSCS-----------GSLVPDFCGEPHLRIHIVGQAFLLNQIRCMVGGALAVATKGMSRVEFDAALLTNRIVRVPIAPAEGLVLLSSSFGGKSHTVSLYEDPNTVLAKERKDVVH---------------RVLLNRKEDEEMTKFRDEVIYKEIASSWDMDEKMDRWRAYLERCYESNGRLDEDELSAV---LFELDQAKLATKNKNQAF-VEQNRSGLTEYGRKGALLPKQFTTKMCVRYGVAPGIFTSDLRRGIILHLKTGKIPLDADDEHIMAHIDSYGPENLAKEG 556
BLAST of mRNA_P-littoralis_Contig887.19.8 vs. uniprot
Match: A0A3F2RKM1_9STRA (PseudoU_synth_1 domain-containing protein n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RKM1_9STRA) HSP 1 Score: 179 bits (454), Expect = 8.480e-44 Identity = 187/681 (27.46%), Postives = 279/681 (40.97%), Query Frame = 2
Query: 386 SKPTKRKVAIVVGYVGTKFHGWQQSSDAQNVRTVEGELETALWKAGAIADSNYGDLNKIGWGRTSRTDKGVHASKTVAAAKLLLPQETFTK--AGMSQYGKDKLNEQLPDDIRCFSVSKVPKSFRGREECTLREYTYYLPKELLPN---------------DEALEKFRALLRLFVGTHSFHNYASTKGRQLKEVRKRVQASIDLKKAGGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESGSKKRWLSKEEWRTYRHKKKSTVDQKAEDAWFGKSKEEGEEGSAAVAAVEVAGGEQGSXXXXXXXXXXXXXXXXXXXXXTAKMDVDEAANGAPAVAKGGDGVESVKWEAAAAXXXXXXXXXDEGGEGEAPDDGPEKQILLRELRTSIYRCEALDDIVSYTRPGQDTPDEFVRIDIRGKAFVYNQIRLMIGGALGEARGDLMSGFVEAALKTPYKLRVPLAPAEGLVLESQAF--TRHTNALVLDPRDLGSIGGTLAVWGETKQGNGMQGTGRLQTLLTLD--QVQEAARWSDEHILPAVADAWKARGTANLFLEAVAKFFVGQQQ-EAPLLKAIADNLSEISEGERRAEEKY---NKFRVLARERGVTKYKDLLPKNIATGIICKFRLLPGNKVSAMQRGVVMRMDKGELPVLAEVDEILEFIEKVGVDAVALDG 2353
+K KRKVAIV GY+GT +HG Q + D Q T+E EL TA++KAGA+ +SN+ DL KI W R+SRTDKGVHA V + KLL+ +E G + + LN LP +IR FS ++V K F R+ C LREY Y+LP L DEA+ +F LR + G H FHN+ ++ K VQA + KA + G + LS E +++ST D AED +++ GD ++G +++L R R SIY C T + +F+R+ I G+AF+ NQIR MIGGAL A + +AAL T +RVP+APAEGLVL S F HT +L DP +LA E K L + LD + +E ++ +E I VA +W + + + + + + + L + L + +E +R + Y N+ + RG LLP+ T + ++ + PG S ++R V + G++P A+ D+I+ +I+ G + +A +G
Sbjct: 51 TKLVKRKVAIVGGYMGTGYHGLQLNKDVQ---TIEDELRTAIFKAGAMRESNFEDLGKIDWSRSSRTDKGVHAGCIVFSGKLLIDEENQVDPTTGRVKGLTEALNASLPSNIRVFSCTRVNKRFSARKNCALREYEYFLPLSFLKECLVESGKIDADSLNMDEAIVEFGRALRRYEGVHDFHNFTRSRSYFYK-----VQAKMMQWKA----------------------------QRDAFDTDDGGDDQDXLS--EIXXSDEEEESTGDDFAED-----------------------------------------------------------------MSQFGD------------------------------EEGLTRKLLPRHRR-SIYSCTG-------TLISDFSGKQFLRVHIVGQAFLLNQIRCMIGGALAVATKGMSRTAFDAALSTNRIVRVPIAPAEGLVLLSSTFGGKLHTVSLYEDPNT------SLAK--ERKD---------LVHRILLDHREDEEMTKFREEVIYTEVASSWNKNEDMDRWRAYLERCYESNKHLDEDELAILLYELDQANERKRSRSQSYVRQNRIDLAENGRGGA----LLPRQFTTKLCIRYNVAPGIFTSDLRRAVARHLRSGKIPCDADEDQIMAYIDSYGSENLAEEG 569
BLAST of mRNA_P-littoralis_Contig887.19.8 vs. uniprot
Match: V9E711_PHYPR (tRNA pseudouridine(38-40) synthase n=7 Tax=Phytophthora parasitica TaxID=4792 RepID=V9E711_PHYPR) HSP 1 Score: 178 bits (451), Expect = 1.880e-43 Identity = 180/676 (26.63%), Postives = 280/676 (41.42%), Query Frame = 2
Query: 386 SKPTKRKVAIVVGYVGTKFHGWQQSSDAQNVRTVEGELETALWKAGAIADSNYGDLNKIGWGRTSRTDKGVHASKTVAAAKLLLPQET-FTKAGMSQYG-KDKLNEQLPDDIRCFSVSKVPKSFRGREECTLREYTYYLPKELLPN------------DEALEKFRALLRLFVGTHSFHNYASTKGRQLKEVRKRVQASIDLKKAGGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESGSKKRWLSKEEWRTYRHKKKSTVDQKAEDAWFGKSKEEGEEGSAAVAAVEVAGGEQGSXXXXXXXXXXXXXXXXXXXXXTAKMDVDEAANGAPAVAKGGDGVESVKWEAAAAXXXXXXXXXDEGGEGEAPDDGPEKQILLRELRTSIYRCEALDDIVSYTRPGQDTPDEFVRIDIRGKAFVYNQIRLMIGGALGEARGDLMSGFVEAALKTPYKLRVPLAPAEGLVLESQAF--TRHTNALVLDPRDLGSIGGTLAVWGETKQGNGMQGTGRLQTLLTLDQVQEAARWSDEHILPAVADAWKARGTANLFLEAVAKFFVGQ----QQEAPLLKAIADNLSEISEGERRAEEKYNKFRVLARERGVTKYKDLLPKNIATGIICKFRLLPGNKVSAMQRGVVMRMDKGELPVLAEVDEILEFIEKVGVDAVALDG 2353
+K KRKVAIV GY+GT +HG Q + NV+T+E ++ A++ AGA+ +SN+ DL KI W R+SRTDKGVHA V + KLL+ +E YG K+ LN LPD+IR FS ++V K F R+ C LREY Y++P L + DEA+ +F LR + G H FHN+ ++ K KR +H + + AED E+ E+ SA V +V VD+ + ES ++E ++ +++LLR R SIY C S T + +R+ I G+AF+ NQIR M+GGAL A + +AAL T +RVP+APAEGLVL S +F HT +L DP T+ + + LL+ + +E ++ +E I ++ +W + + + + + Q E + D ++ + +A + N+F + E G LLPK AT + ++ + PG S ++R V + G++P+ A+ ++IL +I+ G +A +G
Sbjct: 49 AKLVKRKVAIVTGYMGTGYHGLQLND---NVKTIEDDVRQAIFDAGAMRESNFVDLGKIDWARSSRTDKGVHAGCIVFSGKLLIDEENKMDPVSGRVYGLKEALNASLPDNIRVFSCTRVSKRFSARKNCVLREYEYFMPLSFLKDSLVGSDGEDFDTDEAVAEFCRALRRYEGVHDFHNFTRSRSYFYKMQAKR---------------------------------------------------------------KHYRANYQRNAAEDESDDVDAEDVEDESAEVDSV-----------------------------------VDDYSE------------ESSQFE---------------------DEEELTRKLLLRHRR-SIYSC-------SGTLVPDFCGEPHLRVHIVGQAFLLNQIRCMVGGALAVATKGMSRVEFDAALLTNRIVRVPIAPAEGLVLLSSSFGGKSHTVSLYEDPN--------------TELAKERKDVVH-RVLLSRKEDEEMRQFREEVIYKEISRSWDMEEKMDRWRAYLERCYEANERLNQDELSAVLYEMDQAKLATKNKNQAHVEQNRFELT--EYGRKSVGALLPKQFATKLCVRYSVAPGIFTSDLRRAVTRHLKTGKIPLDADEEQILGYIDNYGPANLAKEG 565
BLAST of mRNA_P-littoralis_Contig887.19.8 vs. uniprot
Match: H3GMB8_PHYRM (PseudoU_synth_1 domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GMB8_PHYRM) HSP 1 Score: 178 bits (451), Expect = 2.100e-43 Identity = 188/696 (27.01%), Postives = 286/696 (41.09%), Query Frame = 2
Query: 386 SKPTKRKVAIVVGYVGTKFHGWQQSSDAQNVRTVEGELETALWKAGAIADSNYGDLNKIGWGRTSRTDKGVHASKTVA--------AAKLLLPQETFTK--AGMSQYGKDKLNEQLPDDIRCFSVSKVPKSFRGREECTLREYTYYLPK------------ELLPNDEALEKFRALLRLFVGTHSFHNYASTKGRQLKEVRKRVQASIDLKKAGGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESGSKKRWLSKEEWRTYRHKKKSTVDQKAEDAWFGKSKEEGEEGSAAVAAVEVAGGEQGSXXXXXXXXXXXXXXXXXXXXXTAKMDVDEAANGAPAVAKGGDGVESVKWEAAAAXXXXXXXXXDEGGEGEAPDDGPEKQILLREL----RTSIYRCEALDDIVSYTRPGQDTPD----EFVRIDIRGKAFVYNQIRLMIGGALGEARGDLMSGFVEAALKTPYKLRVPLAPAEGLVLESQAF--TRHTNALVLDPRDLGSIGGTLAVWGETKQGNGMQGTGRLQTLLTLDQVQEAARWSDEHILPAVADAWKARGTANLFLEAVAKFFV--GQQQEAPLLKAIADNLSEISEGERRAEEKYNKFRVLARERGVTKYKDLLPKNIATGIICKFRLLPGNKVSAMQRGV------VMRMDKGELPVLAEVDEILEFIEKVGVDAVALDG 2353
SK KRKVAIV GY+GT +HG Q + +NV T+E E+ A++KAGA+ +SN+ DL KI W R+SRTDKGVHA V + KLL+ +E +G Q + LNE LPD+IR FS ++V K F R+ C LREY Y++P E+L +EA+ +F LR + G H FHN+ ++ K VQA +++W+T + +V GE A+ DVDEA +EGG+ A +++ L R+L R SIY C G PD +R+ I G+AF+ NQIR M+GGAL A + +AAL T +RVP+APAEGLVL S +F HT +L DP A+ E K N + + LL ++ + ++ +E I V +W + + E + + + G+ E L + + D + + R + + R+ E+G + LLP+ T + + + PG S ++R V + + G++P+ A+ D+IL +I+ G + +A +G
Sbjct: 45 SKLVKRKVAIVSGYMGTGYHGLQLN---ENVNTIEDEVRHAIFKAGAMRESNFADLGKIDWARSSRTDKGVHAGCIVVRMEMGFVFSGKLLIDEEDKVDPVSGRVQGLTEALNESLPDNIRVFSCTRVNKRFSARKNCVLREYEYFMPLSFLKASMVGSDVEVLDTEEAVAEFCRALRRYEGVHDFHNFTRSRSYFYK-----VQAQ----------------------------------------------------RKQWKTQ-------------------------------SRTDVTDGE------------------VVEADDNAEDDVDEAEG-------------------------------EEGGDDYATSQFHDEEELTRKLLPRHRRSIYSCS-----------GSLIPDFCGEPHLRVHIVGQAFLLNQIRCMVGGALAVATKGMSRVAFDAALTTNRIVRVPIAPAEGLVLLSSSFGGKLHTVSLYEDPN--------TALAKERK--NLVH-----RILLNKNEDDKMQKFREEVIYKEVGSSWNMEEKLDRWREYLERCYESNGRLDEDELSRVLFDLDQAKLKSKTRNQSIVEQNRIELVEKG--RQGALLPRQFTTKLCVRLSVAPGIFTSDLRRAVTRCCPVLQHLKSGKIPLDADEDQILTYIDSCGPENLAEEG 572
BLAST of mRNA_P-littoralis_Contig887.19.8 vs. uniprot
Match: A0A0W8CQF3_PHYNI (Ubiquitin fusion degradation protein 1 n=3 Tax=Phytophthora TaxID=4783 RepID=A0A0W8CQF3_PHYNI) HSP 1 Score: 181 bits (460), Expect = 5.440e-43 Identity = 182/678 (26.84%), Postives = 281/678 (41.45%), Query Frame = 2
Query: 380 ELSKPTKRKVAIVVGYVGTKFHGWQQSSDAQNVRTVEGELETALWKAGAIADSNYGDLNKIGWGRTSRTDKGVHASKTVAAAKLLLPQET-FTKAGMSQYG-KDKLNEQLPDDIRCFSVSKVPKSFRGREECTLREYTYYLPKELLPN------------DEALEKFRALLRLFVGTHSFHNYASTKGRQLKEVRKRVQASIDLKKAGGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESGSKKRWLSKEEWRTYRHKKKSTVDQKAEDAWFGKSKEEGEEGSAAVAAVEVAGGEQGSXXXXXXXXXXXXXXXXXXXXXTAKMDVDEAANGAPAVAKGGDGVESVKWEAAAAXXXXXXXXXDEGGEGEAPDDGPEKQILLRELRTSIYRCEALDDIVSYTRPGQDTPDEFVRIDIRGKAFVYNQIRLMIGGALGEARGDLMSGFVEAALKTPYKLRVPLAPAEGLVLESQAF--TRHTNALVLDPRDLGSIGGTLAVWGETKQGNGMQGTGRLQTLLTLDQVQEAARWSDEHILPAVADAWKARGTANLFLEAVAKFFVGQ----QQEAPLLKAIADNLSEISEGERRAEEKYNKFRVLARERGVTKYKDLLPKNIATGIICKFRLLPGNKVSAMQRGVVMRMDKGELPVLAEVDEILEFIEKVGVDAVALDG 2353
E +K KRKVAIV GY+GT +HG Q + NV+T+E ++ A++ AGA+ +SN+ DL KI W R+SRTDKGVHA V + KLL+ +E YG K+ LN LPD+IR FS ++V K F R+ C LREY Y++P L + DEA+ +F LR + G H FHN+ ++ K KR +H + + AED E+ E+ SA V +V VD+ + ES ++E ++ +++LLR R SIY C S T + +R+ I G+AF+ NQIR M+GGAL A + +AAL T +RVP+APAEGLVL S +F HT +L DP T+ + + LL + +E ++ +E I ++ +W + + + + + Q E + D ++ + +A + N+F + E G LLPK AT + ++ + PG S ++R V + G++P+ A+ ++ILE+I+ G +A +G
Sbjct: 47 EPAKLVKRKVAIVTGYMGTGYHGLQLND---NVKTIEDDVRQAIFDAGAMRESNFVDLGKIDWARSSRTDKGVHAGCIVFSGKLLIDEENKMDPVSGRVYGLKEALNASLPDNIRVFSCTRVSKRFSARKNCVLREYEYFMPLSFLKDSLVGSDGEDFDTDEAVAEFCRALRRYEGVHDFHNFTRSRSYFYKMQAKR---------------------------------------------------------------KHYRANYQRNAAEDESDDVDAEDVEDESAEVDSV-----------------------------------VDDYSE------------ESSQFE---------------------DEEELTRKLLLRHRR-SIYSC-------SGTLVPDFCGEPHLRVHIVGQAFLLNQIRCMVGGALAVATKGMSRVEFDAALLTNRIVRVPIAPAEGLVLLSSSFGGKSHTVSLYEDPN--------------TELAKERKDVVH-RVLLNRKEDEEMRQFREEVIYKEISRSWDMEEKMDRWRAYLERCYEANERLNQDELSAVLYEMDQAKLATKNKNQAHVEQNRFELT--EYGRKSVGALLPKQFATKLCVRYSVAPGIFTSDLRRAVTRHLKTGKIPLDADEEQILEYIDNYGPANLAKEG 565 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig887.19.8 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig887.19.8 >prot_P-littoralis_Contig887.19.8 ID=prot_P-littoralis_Contig887.19.8|Name=mRNA_P-littoralis_Contig887.19.8|organism=Pylaiella littoralis U1_48|type=polypeptide|length=822bp MVLGHRTTRLSIILLCYIRGYGHAFGTSPRCMLARLTSKTTARGLQSGLAback to top mRNA from alignment at P-littoralis_Contig887:73174..95055- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig887.19.8 ID=mRNA_P-littoralis_Contig887.19.8|Name=mRNA_P-littoralis_Contig887.19.8|organism=Pylaiella littoralis U1_48|type=mRNA|length=21882bp|location=Sequence derived from alignment at P-littoralis_Contig887:73174..95055- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig887:73174..95055- >mRNA_P-littoralis_Contig887.19.8 ID=mRNA_P-littoralis_Contig887.19.8|Name=mRNA_P-littoralis_Contig887.19.8|organism=Pylaiella littoralis U1_48|type=CDS|length=2466bp|location=Sequence derived from alignment at P-littoralis_Contig887:73174..95055- (Pylaiella littoralis U1_48)back to top |