mRNA_P-littoralis_Contig887.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig887.1.1
Unique NamemRNA_P-littoralis_Contig887.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig887.1.1 vs. uniprot
Match: D7G5I2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5I2_ECTSI)

HSP 1 Score: 285 bits (729), Expect = 9.200e-97
Identity = 145/154 (94.16%), Postives = 145/154 (94.16%), Query Frame = 3 
Query:    3 MSSTFSDETWRYFREKYVSLLGDGSVVSAGLDNKSKSYRIHLVADLPEGVRNEWRSTPIKRPKGRKTGRDRGAEHKFFEDWWPSEGGNVVELLRDSRHRIEAEAEAEVAAARTKRPRDCHVSTAEHERPEKRGGKREGAGRPCGSFGPKKLRQR 464
            MSSTFSDETWRYFREK VSLLGDGSVVSAGLDNKSKSYRIHLVADL EGVR EWRSTPIKRPKGRKTGRDRGAEHKFFEDW PSEGGNVVE LRDSRHRIEAEAEAEVAAARTKRPRDCH S AEH RPEKRGGKREGAGRP GSFGPKKLRQR
Sbjct:    1 MSSTFSDETWRYFREKCVSLLGDGSVVSAGLDNKSKSYRIHLVADLREGVRKEWRSTPIKRPKGRKTGRDRGAEHKFFEDWRPSEGGNVVERLRDSRHRIEAEAEAEVAAARTKRPRDCHASAAEHARPEKRGGKREGAGRPRGSFGPKKLRQR 154
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BLAST of mRNA_P-littoralis_Contig887.1.1 vs. uniprot
Match: A0A6H5JPF3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPF3_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 2.560e-12
Identity = 50/121 (41.32%), Postives = 61/121 (50.41%), Query Frame = 3 
Query:  105 SKSYRIHLVADLPEGVRNEWRSTPIKRPKGRKTGRDRGAEHKFFEDWWPSEGGNVVELLRDSRHRIEAEAEAEVAAARTKRPRDCHVSTAEHERPEKRGGKREGAGRPCGSFGPKKLRQRL 467
            +K YR+ L ADL +G  + WRS  IK PKG+   RD  AE K+   W PS       L  +   R   +        R KRPRDC  +      P KR G  EGAGRP G+FG K+LR  L
Sbjct:   33 AKKYRLQLTADLSDGSSSMWRSDYIKYPKGQTKARDWSAEAKWAAAWRPSSSSGSAVLSTEDARRGSNDTPP---PPRGKRPRDCQPAAEILTPPPKRPGY-EGAGRPKGTFGRKRLRAML 149
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BLAST of mRNA_P-littoralis_Contig887.1.1 vs. uniprot
Match: A0A6H5JEX5_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEX5_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 1.710e-11
Identity = 50/121 (41.32%), Postives = 61/121 (50.41%), Query Frame = 3 
Query:  105 SKSYRIHLVADLPEGVRNEWRSTPIKRPKGRKTGRDRGAEHKFFEDWWPSEGGNVVELLRDSRHRIEAEAEAEVAAARTKRPRDCHVSTAEHERPEKRGGKREGAGRPCGSFGPKKLRQRL 467
            +K YR+ L ADL +G  + WRS  IK PKG+   RD  AE K+   W PS       L  +   R   +        R KRPRDC  +      P KR G  EGAGRP G+FG K+LR  L
Sbjct:   33 AKKYRLQLTADLSDGSSSMWRSDYIKYPKGQTKARDWSAEAKWAAAWRPSSSSGSAVLSTEDARRGSNDTPP---PPRGKRPRDCQPAAEILTPPPKRPGY-EGAGRPKGTFGRKRLRAML 149
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig887.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G5I2_ECTSI9.200e-9794.16Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JPF3_9PHAE2.560e-1241.32Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JEX5_9PHAE1.710e-1141.32Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig887contigP-littoralis_Contig887:1190..1689 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size500
Hectar predicted targeting categoryother localisation
Exons1
Cds size474
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791774.1149964-UTR-P-littoralis_Contig887:1189..11911680791774.1149964-UTR-P-littoralis_Contig887:1189..1191Pylaiella littoralis U1_48UTRP-littoralis_Contig887 1190..1191 +
1680791774.1375232-UTR-P-littoralis_Contig887:1665..16891680791774.1375232-UTR-P-littoralis_Contig887:1665..1689Pylaiella littoralis U1_48UTRP-littoralis_Contig887 1666..1689 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791774.12836-CDS-P-littoralis_Contig887:1191..16651680791774.12836-CDS-P-littoralis_Contig887:1191..1665Pylaiella littoralis U1_48CDSP-littoralis_Contig887 1192..1665 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig887.1.1prot_P-littoralis_Contig887.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig887 1192..1665 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig887.1.1

>prot_P-littoralis_Contig887.1.1 ID=prot_P-littoralis_Contig887.1.1|Name=mRNA_P-littoralis_Contig887.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=158bp
MSSTFSDETWRYFREKYVSLLGDGSVVSAGLDNKSKSYRIHLVADLPEGV
RNEWRSTPIKRPKGRKTGRDRGAEHKFFEDWWPSEGGNVVELLRDSRHRI
EAEAEAEVAAARTKRPRDCHVSTAEHERPEKRGGKREGAGRPCGSFGPKK
LRQRLQE*
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mRNA from alignment at P-littoralis_Contig887:1190..1689+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig887.1.1 ID=mRNA_P-littoralis_Contig887.1.1|Name=mRNA_P-littoralis_Contig887.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=500bp|location=Sequence derived from alignment at P-littoralis_Contig887:1190..1689+ (Pylaiella littoralis U1_48)
TCATGTCGTCCACGTTCAGCGATGAGACATGGCGTTACTTCAGGGAGAAG
TATGTATCGCTTCTGGGAGACGGGAGTGTTGTCAGCGCGGGTCTTGACAA
CAAGAGCAAGTCGTATCGCATACATCTTGTCGCGGACCTCCCTGAGGGCG
TCAGGAACGAGTGGAGGAGCACGCCGATCAAACGTCCAAAGGGCCGCAAG
ACGGGTCGCGACCGGGGTGCCGAGCACAAGTTCTTCGAGGACTGGTGGCC
GTCTGAGGGCGGCAACGTCGTCGAGCTCCTGCGAGACTCCAGGCACCGCA
TTGAGGCGGAGGCAGAAGCGGAGGTGGCGGCAGCTCGAACCAAGAGACCG
CGGGACTGTCATGTCAGCACCGCCGAGCATGAACGCCCCGAGAAGCGCGG
CGGCAAGCGCGAAGGTGCAGGCAGGCCATGCGGCAGCTTCGGCCCGAAGA
AGCTACGCCAGAGACTGCAAGAGTAGGCAAGGTCAAGGGGTTGAGGCAGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig887:1190..1689+

>mRNA_P-littoralis_Contig887.1.1 ID=mRNA_P-littoralis_Contig887.1.1|Name=mRNA_P-littoralis_Contig887.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=474bp|location=Sequence derived from alignment at P-littoralis_Contig887:1190..1689+ (Pylaiella littoralis U1_48)
ATGTCGTCCACGTTCAGCGATGAGACATGGCGTTACTTCAGGGAGAAGTA
TGTATCGCTTCTGGGAGACGGGAGTGTTGTCAGCGCGGGTCTTGACAACA
AGAGCAAGTCGTATCGCATACATCTTGTCGCGGACCTCCCTGAGGGCGTC
AGGAACGAGTGGAGGAGCACGCCGATCAAACGTCCAAAGGGCCGCAAGAC
GGGTCGCGACCGGGGTGCCGAGCACAAGTTCTTCGAGGACTGGTGGCCGT
CTGAGGGCGGCAACGTCGTCGAGCTCCTGCGAGACTCCAGGCACCGCATT
GAGGCGGAGGCAGAAGCGGAGGTGGCGGCAGCTCGAACCAAGAGACCGCG
GGACTGTCATGTCAGCACCGCCGAGCATGAACGCCCCGAGAAGCGCGGCG
GCAAGCGCGAAGGTGCAGGCAGGCCATGCGGCAGCTTCGGCCCGAAGAAG
CTACGCCAGAGACTGCAAGAGTAG
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