mRNA_P-littoralis_Contig878.1.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig878.1.1 vs. uniprot
Match: D7FV92_ECTSI (Spindle pole body component n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FV92_ECTSI) HSP 1 Score: 251 bits (641), Expect = 3.600e-75 Identity = 126/144 (87.50%), Postives = 133/144 (92.36%), Query Frame = 1
Query: 1 AWLGPLWMLRARMAFFVSNLAFYLQVDVVEAAYKLLQSKLGAVRDFVSLQRAHQEFLATLRAKFYIDNLEISQGLGRALRHVLRFCCLFALHGDVKDIPPLEVTALRNTFQDEMKLLVPVLEKLAKELMMRLDFNGHFSAEALY 432
AWLGPLWMLRARMAFFVSNLAFYLQVDVVEAAY LL+SKL VRDFVSLQRAHQEFLATLRAKFY+DNL I+QGLGRALRHVLRFCCLF+LHGD KDI EV AL + FQDEMKLLVPVLEK+AKELMMRLDFNGHFSAEAL+
Sbjct: 923 AWLGPLWMLRARMAFFVSNLAFYLQVDVVEAAYTLLRSKLVTVRDFVSLQRAHQEFLATLRAKFYVDNLAIAQGLGRALRHVLRFCCLFSLHGDAKDILHSEVIALHDAFQDEMKLLVPVLEKVAKELMMRLDFNGHFSAEALH 1066
BLAST of mRNA_P-littoralis_Contig878.1.1 vs. uniprot
Match: T2M448_HYDVU (Gamma-tubulin complex component (Fragment) n=1 Tax=Hydra vulgaris TaxID=6087 RepID=T2M448_HYDVU) HSP 1 Score: 83.2 bits (204), Expect = 6.160e-16 Identity = 51/147 (34.69%), Postives = 82/147 (55.78%), Query Frame = 1
Query: 16 LWMLRARMAFFVSNLAFYLQVDVVEAAYKLLQSKLGAVRDFVSLQRAHQEFLATLRAKFYIDNLEISQGLGRALRHVLRFCCLFALHGDVKDIPPLEVTALRNT--FQDEMKLLVPVLEKLAK--------ELMMRLDFNGHFSAEA 426
LW LR+RMAFFV N +YLQVDV+E+ + LL K+ +RDF S+ ++H FL T+ + +I + L L ++FC L + + D D LE TA + T F + +L +L + +L++R+DFN +F+ ++
Sbjct: 264 LWALRSRMAFFVDNFQYYLQVDVLESQFSLLLEKIKKLRDFESIHKSHDSFLITMLQQSFISMKPVLSILQHVLEICMKFCELVSFNRDSDD--DLE-TAQQYTQDFDRQTSVLFKILSSVRSHQTSPHLAQLLLRIDFNKYFTRKS 407
BLAST of mRNA_P-littoralis_Contig878.1.1 vs. uniprot
Match: A0A7S3USH3_HETAK (Spindle pole body component (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3USH3_HETAK) HSP 1 Score: 77.8 bits (190), Expect = 6.420e-16 Identity = 37/76 (48.68%), Postives = 51/76 (67.11%), Query Frame = 1
Query: 10 GPLWMLRARMAFFVSNLAFYLQVDVVEAAYKLLQSKLGAVRDFVSLQRAHQEFLATLRAKFYIDNLEISQGLGRAL 237
LW LRA MAFFV NL +YLQVDV+EA + +L + +DF S+++AH ++ TLR+K Y+D + LGRAL
Sbjct: 9 AELWHLRAAMAFFVQNLLYYLQVDVIEAQFTILMDSIEKAKDFNSVRKAHSLYIQTLRSKCYLDVAAVRGALGRAL 84
BLAST of mRNA_P-littoralis_Contig878.1.1 vs. uniprot
Match: A0A8B6XWI3_HYDVU (Gamma-tubulin complex component n=2 Tax=Hydra vulgaris TaxID=6087 RepID=A0A8B6XWI3_HYDVU) HSP 1 Score: 83.2 bits (204), Expect = 8.330e-16 Identity = 51/147 (34.69%), Postives = 82/147 (55.78%), Query Frame = 1
Query: 16 LWMLRARMAFFVSNLAFYLQVDVVEAAYKLLQSKLGAVRDFVSLQRAHQEFLATLRAKFYIDNLEISQGLGRALRHVLRFCCLFALHGDVKDIPPLEVTALRNT--FQDEMKLLVPVLEKLAK--------ELMMRLDFNGHFSAEA 426
LW LR+RMAFFV N +YLQVDV+E+ + LL K+ +RDF S+ ++H FL T+ + +I + L L ++FC L + + D D LE TA + T F + +L +L + +L++R+DFN +F+ ++
Sbjct: 472 LWALRSRMAFFVDNFQYYLQVDVLESQFSLLLEKIKKLRDFESIHKSHDSFLITMLQQSFISMKPVLSILQHVLEICMKFCELVSFNRDSDD--DLE-TAQQYTQDFDRQTSVLFKILSSVRSHQTSPHLAQLLLRIDFNKYFTRKS 615
BLAST of mRNA_P-littoralis_Contig878.1.1 vs. uniprot
Match: D8QRE9_SELML (Gamma-tubulin complex component n=4 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8QRE9_SELML) HSP 1 Score: 81.6 bits (200), Expect = 2.940e-15 Identity = 45/148 (30.41%), Postives = 78/148 (52.70%), Query Frame = 1
Query: 13 PLWMLRARMAFFVSNLAFYLQVDVVEAAYKLLQSKLGAVRDFVSLQRAHQEFLATLRAKFYIDNLEISQGLGRALRHVLRFCCLFALHGDVKDIPPLEVTALRNTFQDEMKLLVPVLE--KLA--------KELMMRLDFNGHFSAEA 426
P W LR MA+ ++NL FY+QVDV+E+ + LLQ ++ A +DF L R HQE+L+ L ++ ++D +S+ L ++ L+ C + E+ + F + L +L KLA ++ ++RL++N F + A
Sbjct: 555 PTWRLRQHMAYLITNLQFYIQVDVIESQWNLLQERVQASKDFTELARFHQEYLSALISQSFLDIGSVSRILDSIIKLCLQLCRIMEHQDATSSSTAAELDQITEEFNKKSNSLYTILRSSKLAGSQRAPFLRQFLLRLNYNSFFESTA 702
BLAST of mRNA_P-littoralis_Contig878.1.1 vs. uniprot
Match: A0A2R5GLN9_9STRA (Gamma-tubulin complex component 4 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GLN9_9STRA) HSP 1 Score: 81.6 bits (200), Expect = 3.150e-15 Identity = 49/150 (32.67%), Postives = 76/150 (50.67%), Query Frame = 1
Query: 7 LGPLWMLRARMAFFVSNLAFYLQVDVVEAAYKLLQSKLGAVRDFVSLQRAHQEFLATLRAKFYIDNLEISQGLGRALRHVLRFCCLF-------ALHGDVKDIPPLEVTALRNTFQD-------EMKLLVPVLEKLAKELMMRLDFNGHF 414
L LW LR+ MA++V+NL ++LQVDVV+AA+K L ++ DF +++AH +F+ T ++ N + + + LR LRFC L A D + L F D + K L +L L +++R+DFNG F
Sbjct: 1365 LMTLWRLRSSMAYWVNNLQYHLQVDVVDAAHKTLLDEIRNASDFKFVEQAHDKFVETFITGAFLHNKTVRETIDHVLRRCLRFCSLVERFARLDAASADGASADAQKYEDLDKAFNDLAKAYARDAKFLYQMLLSLNSNMLLRIDFNGFF 1514
BLAST of mRNA_P-littoralis_Contig878.1.1 vs. uniprot
Match: W1NYA3_AMBTC (Gamma-tubulin complex component n=2 Tax=Amborella trichopoda TaxID=13333 RepID=W1NYA3_AMBTC) HSP 1 Score: 81.3 bits (199), Expect = 4.030e-15 Identity = 46/149 (30.87%), Postives = 81/149 (54.36%), Query Frame = 1
Query: 10 GPLWMLRARMAFFVSNLAFYLQVDVVEAAYKLLQSKLGAVRDFVSLQRAHQEFLATLRAKFYIDNLEISQGLGRALRHVLRFCCLFALHGDVKDIPPLEVTALRNTFQDEMKLLVPVLE--KLA--------KELMMRLDFNGHFSAEA 426
P+W +R MAF ++NL FY+QVDV+E+ + LLQ ++ A DF L HQE+L+ L ++ ++D +S+ L ++ L+FC +++ L++ + F + L +L K+A ++ ++RL+FN F A A
Sbjct: 584 SPIWRVRGHMAFLITNLQFYIQVDVIESQWNLLQERVQASHDFTELVGFHQEYLSALISQSFLDIGSVSRILDSIMKLCLQFC--WSIERQETSPTTLDLEHISEEFNKKSNSLYTILRSSKIAGSQRAPFLRQFLLRLNFNSFFEATA 730
BLAST of mRNA_P-littoralis_Contig878.1.1 vs. uniprot
Match: A0A2Z7AVJ4_9LAMI (Gamma-tubulin complex component n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7AVJ4_9LAMI) HSP 1 Score: 80.9 bits (198), Expect = 5.520e-15 Identity = 47/148 (31.76%), Postives = 76/148 (51.35%), Query Frame = 1
Query: 13 PLWMLRARMAFFVSNLAFYLQVDVVEAAYKLLQSKLGAVRDFVSLQRAHQEFLATLRAKFYIDNLEISQGLGRALRHVLRFCCLFALHGDVKDIPPLEVTALRNTFQDEMKLLVPVLEK----------LAKELMMRLDFNGHFSAEA 426
P+W +R MAF + NL FY+QVDVVE+ + +LQ+ + + RDF L HQE+L+ L ++ ++D +S+ L ++ L+FC H + + LE A F + L +L + ++RL+FN F A A
Sbjct: 623 PMWRVREHMAFLIRNLQFYIQVDVVESQWNVLQAHIQSSRDFTELVGHHQEYLSALISQSFLDIGSVSRILDGIMKVCLQFCWKLETHENNESTAELEYIA--EEFNKKSNSLYTILRSSRIAGSQRAPFLRRFLLRLNFNSFFEATA 768
BLAST of mRNA_P-littoralis_Contig878.1.1 vs. uniprot
Match: M1D4N5_SOLTU (Gamma-tubulin complex component n=18 Tax=Solanaceae TaxID=4070 RepID=M1D4N5_SOLTU) HSP 1 Score: 79.7 bits (195), Expect = 6.170e-15 Identity = 48/150 (32.00%), Postives = 81/150 (54.00%), Query Frame = 1
Query: 7 LGPLWMLRARMAFFVSNLAFYLQVDVVEAAYKLLQSKLGAVRDFVSLQRAHQEFLATLRAKFYIDNLEISQGLGRALRHVLRFCCLFALHGDVKDIPPLEVTALRNTFQDEMKLLVPVLE--KLA--------KELMMRLDFNGHFSAEA 426
L P+W +R MAF + NL FY+QVDV+E+ + +LQS + +DF L HQE+LA L ++ ++D +S+ L ++ L+FC + + D + E+ + F + L +L +LA ++ ++RL+FN F A A
Sbjct: 157 LRPMWHVREHMAFLIRNLQFYIQVDVIESQWNVLQSHIQNSQDFTELVGFHQEYLAALISQSFLDIGSVSRILDGIMKLCLQFC--WKIENDESNRTTSELGHIAEEFNKKSNSLYTILRSSRLAGSQRAPFLRQFLLRLNFNSFFEATA 304
BLAST of mRNA_P-littoralis_Contig878.1.1 vs. uniprot
Match: A0A388JRY8_CHABU (Gamma-tubulin complex component n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388JRY8_CHABU) HSP 1 Score: 78.2 bits (191), Expect = 8.130e-15 Identity = 46/147 (31.29%), Postives = 78/147 (53.06%), Query Frame = 1
Query: 16 LWMLRARMAFFVSNLAFYLQVDVVEAAYKLLQSKLGAVRDFVSLQRAHQEFLATLRAKFYIDNLEISQGLGRALRHVLRFCCLFALHGDVKDIPPLEVTALRNTFQDEMKLLVPVLE--KLA--------KELMMRLDFNGHFSAEA 426
+W LR M + ++NL FY+QVDV+E+ KLLQ ++ A +DF L R HQE+L+ L + ++D IS+ L ++ + C L D E+ +L F+ L +L KL+ ++ ++RL++N +F +A
Sbjct: 60 MWQLRQHMTYLITNLQFYIQVDVIESQSKLLQERIEASKDFTELTRFHQEYLSALITQSFLDTGSISRILDLIIKLCWQLCKLIEASDATPDTA--EIESLAKLFRQRSISLFTILSSSKLSGSQRAPFLRQFLLRLNYNNYFHNQA 204 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig878.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig878.1.1 >prot_P-littoralis_Contig878.1.1 ID=prot_P-littoralis_Contig878.1.1|Name=mRNA_P-littoralis_Contig878.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=138bp MLRARMAFFVSNLAFYLQVDVVEAAYKLLQSKLGAVRDFVSLQRAHQEFLback to top mRNA from alignment at P-littoralis_Contig878:5..1472+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig878.1.1 ID=mRNA_P-littoralis_Contig878.1.1|Name=mRNA_P-littoralis_Contig878.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1468bp|location=Sequence derived from alignment at P-littoralis_Contig878:5..1472+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig878:5..1472+ >mRNA_P-littoralis_Contig878.1.1 ID=mRNA_P-littoralis_Contig878.1.1|Name=mRNA_P-littoralis_Contig878.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=414bp|location=Sequence derived from alignment at P-littoralis_Contig878:5..1472+ (Pylaiella littoralis U1_48)back to top |