mRNA_P-littoralis_Contig878.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig878.1.1
Unique NamemRNA_P-littoralis_Contig878.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig878.1.1 vs. uniprot
Match: D7FV92_ECTSI (Spindle pole body component n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FV92_ECTSI)

HSP 1 Score: 251 bits (641), Expect = 3.600e-75
Identity = 126/144 (87.50%), Postives = 133/144 (92.36%), Query Frame = 1
Query:    1 AWLGPLWMLRARMAFFVSNLAFYLQVDVVEAAYKLLQSKLGAVRDFVSLQRAHQEFLATLRAKFYIDNLEISQGLGRALRHVLRFCCLFALHGDVKDIPPLEVTALRNTFQDEMKLLVPVLEKLAKELMMRLDFNGHFSAEALY 432
            AWLGPLWMLRARMAFFVSNLAFYLQVDVVEAAY LL+SKL  VRDFVSLQRAHQEFLATLRAKFY+DNL I+QGLGRALRHVLRFCCLF+LHGD KDI   EV AL + FQDEMKLLVPVLEK+AKELMMRLDFNGHFSAEAL+
Sbjct:  923 AWLGPLWMLRARMAFFVSNLAFYLQVDVVEAAYTLLRSKLVTVRDFVSLQRAHQEFLATLRAKFYVDNLAIAQGLGRALRHVLRFCCLFSLHGDAKDILHSEVIALHDAFQDEMKLLVPVLEKVAKELMMRLDFNGHFSAEALH 1066          
BLAST of mRNA_P-littoralis_Contig878.1.1 vs. uniprot
Match: T2M448_HYDVU (Gamma-tubulin complex component (Fragment) n=1 Tax=Hydra vulgaris TaxID=6087 RepID=T2M448_HYDVU)

HSP 1 Score: 83.2 bits (204), Expect = 6.160e-16
Identity = 51/147 (34.69%), Postives = 82/147 (55.78%), Query Frame = 1
Query:   16 LWMLRARMAFFVSNLAFYLQVDVVEAAYKLLQSKLGAVRDFVSLQRAHQEFLATLRAKFYIDNLEISQGLGRALRHVLRFCCLFALHGDVKDIPPLEVTALRNT--FQDEMKLLVPVLEKLAK--------ELMMRLDFNGHFSAEA 426
            LW LR+RMAFFV N  +YLQVDV+E+ + LL  K+  +RDF S+ ++H  FL T+  + +I    +   L   L   ++FC L + + D  D   LE TA + T  F  +  +L  +L  +          +L++R+DFN +F+ ++
Sbjct:  264 LWALRSRMAFFVDNFQYYLQVDVLESQFSLLLEKIKKLRDFESIHKSHDSFLITMLQQSFISMKPVLSILQHVLEICMKFCELVSFNRDSDD--DLE-TAQQYTQDFDRQTSVLFKILSSVRSHQTSPHLAQLLLRIDFNKYFTRKS 407          
BLAST of mRNA_P-littoralis_Contig878.1.1 vs. uniprot
Match: A0A7S3USH3_HETAK (Spindle pole body component (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3USH3_HETAK)

HSP 1 Score: 77.8 bits (190), Expect = 6.420e-16
Identity = 37/76 (48.68%), Postives = 51/76 (67.11%), Query Frame = 1
Query:   10 GPLWMLRARMAFFVSNLAFYLQVDVVEAAYKLLQSKLGAVRDFVSLQRAHQEFLATLRAKFYIDNLEISQGLGRAL 237
              LW LRA MAFFV NL +YLQVDV+EA + +L   +   +DF S+++AH  ++ TLR+K Y+D   +   LGRAL
Sbjct:    9 AELWHLRAAMAFFVQNLLYYLQVDVIEAQFTILMDSIEKAKDFNSVRKAHSLYIQTLRSKCYLDVAAVRGALGRAL 84          
BLAST of mRNA_P-littoralis_Contig878.1.1 vs. uniprot
Match: A0A8B6XWI3_HYDVU (Gamma-tubulin complex component n=2 Tax=Hydra vulgaris TaxID=6087 RepID=A0A8B6XWI3_HYDVU)

HSP 1 Score: 83.2 bits (204), Expect = 8.330e-16
Identity = 51/147 (34.69%), Postives = 82/147 (55.78%), Query Frame = 1
Query:   16 LWMLRARMAFFVSNLAFYLQVDVVEAAYKLLQSKLGAVRDFVSLQRAHQEFLATLRAKFYIDNLEISQGLGRALRHVLRFCCLFALHGDVKDIPPLEVTALRNT--FQDEMKLLVPVLEKLAK--------ELMMRLDFNGHFSAEA 426
            LW LR+RMAFFV N  +YLQVDV+E+ + LL  K+  +RDF S+ ++H  FL T+  + +I    +   L   L   ++FC L + + D  D   LE TA + T  F  +  +L  +L  +          +L++R+DFN +F+ ++
Sbjct:  472 LWALRSRMAFFVDNFQYYLQVDVLESQFSLLLEKIKKLRDFESIHKSHDSFLITMLQQSFISMKPVLSILQHVLEICMKFCELVSFNRDSDD--DLE-TAQQYTQDFDRQTSVLFKILSSVRSHQTSPHLAQLLLRIDFNKYFTRKS 615          
BLAST of mRNA_P-littoralis_Contig878.1.1 vs. uniprot
Match: D8QRE9_SELML (Gamma-tubulin complex component n=4 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8QRE9_SELML)

HSP 1 Score: 81.6 bits (200), Expect = 2.940e-15
Identity = 45/148 (30.41%), Postives = 78/148 (52.70%), Query Frame = 1
Query:   13 PLWMLRARMAFFVSNLAFYLQVDVVEAAYKLLQSKLGAVRDFVSLQRAHQEFLATLRAKFYIDNLEISQGLGRALRHVLRFCCLFALHGDVKDIPPLEVTALRNTFQDEMKLLVPVLE--KLA--------KELMMRLDFNGHFSAEA 426
            P W LR  MA+ ++NL FY+QVDV+E+ + LLQ ++ A +DF  L R HQE+L+ L ++ ++D   +S+ L   ++  L+ C +             E+  +   F  +   L  +L   KLA        ++ ++RL++N  F + A
Sbjct:  555 PTWRLRQHMAYLITNLQFYIQVDVIESQWNLLQERVQASKDFTELARFHQEYLSALISQSFLDIGSVSRILDSIIKLCLQLCRIMEHQDATSSSTAAELDQITEEFNKKSNSLYTILRSSKLAGSQRAPFLRQFLLRLNYNSFFESTA 702          
BLAST of mRNA_P-littoralis_Contig878.1.1 vs. uniprot
Match: A0A2R5GLN9_9STRA (Gamma-tubulin complex component 4 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GLN9_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 3.150e-15
Identity = 49/150 (32.67%), Postives = 76/150 (50.67%), Query Frame = 1
Query:    7 LGPLWMLRARMAFFVSNLAFYLQVDVVEAAYKLLQSKLGAVRDFVSLQRAHQEFLATLRAKFYIDNLEISQGLGRALRHVLRFCCLF-------ALHGDVKDIPPLEVTALRNTFQD-------EMKLLVPVLEKLAKELMMRLDFNGHF 414
            L  LW LR+ MA++V+NL ++LQVDVV+AA+K L  ++    DF  +++AH +F+ T     ++ N  + + +   LR  LRFC L        A   D       +   L   F D       + K L  +L  L   +++R+DFNG F
Sbjct: 1365 LMTLWRLRSSMAYWVNNLQYHLQVDVVDAAHKTLLDEIRNASDFKFVEQAHDKFVETFITGAFLHNKTVRETIDHVLRRCLRFCSLVERFARLDAASADGASADAQKYEDLDKAFNDLAKAYARDAKFLYQMLLSLNSNMLLRIDFNGFF 1514          
BLAST of mRNA_P-littoralis_Contig878.1.1 vs. uniprot
Match: W1NYA3_AMBTC (Gamma-tubulin complex component n=2 Tax=Amborella trichopoda TaxID=13333 RepID=W1NYA3_AMBTC)

HSP 1 Score: 81.3 bits (199), Expect = 4.030e-15
Identity = 46/149 (30.87%), Postives = 81/149 (54.36%), Query Frame = 1
Query:   10 GPLWMLRARMAFFVSNLAFYLQVDVVEAAYKLLQSKLGAVRDFVSLQRAHQEFLATLRAKFYIDNLEISQGLGRALRHVLRFCCLFALHGDVKDIPPLEVTALRNTFQDEMKLLVPVLE--KLA--------KELMMRLDFNGHFSAEA 426
             P+W +R  MAF ++NL FY+QVDV+E+ + LLQ ++ A  DF  L   HQE+L+ L ++ ++D   +S+ L   ++  L+FC  +++         L++  +   F  +   L  +L   K+A        ++ ++RL+FN  F A A
Sbjct:  584 SPIWRVRGHMAFLITNLQFYIQVDVIESQWNLLQERVQASHDFTELVGFHQEYLSALISQSFLDIGSVSRILDSIMKLCLQFC--WSIERQETSPTTLDLEHISEEFNKKSNSLYTILRSSKIAGSQRAPFLRQFLLRLNFNSFFEATA 730          
BLAST of mRNA_P-littoralis_Contig878.1.1 vs. uniprot
Match: A0A2Z7AVJ4_9LAMI (Gamma-tubulin complex component n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7AVJ4_9LAMI)

HSP 1 Score: 80.9 bits (198), Expect = 5.520e-15
Identity = 47/148 (31.76%), Postives = 76/148 (51.35%), Query Frame = 1
Query:   13 PLWMLRARMAFFVSNLAFYLQVDVVEAAYKLLQSKLGAVRDFVSLQRAHQEFLATLRAKFYIDNLEISQGLGRALRHVLRFCCLFALHGDVKDIPPLEVTALRNTFQDEMKLLVPVLEK----------LAKELMMRLDFNGHFSAEA 426
            P+W +R  MAF + NL FY+QVDVVE+ + +LQ+ + + RDF  L   HQE+L+ L ++ ++D   +S+ L   ++  L+FC     H + +    LE  A    F  +   L  +L              +  ++RL+FN  F A A
Sbjct:  623 PMWRVREHMAFLIRNLQFYIQVDVVESQWNVLQAHIQSSRDFTELVGHHQEYLSALISQSFLDIGSVSRILDGIMKVCLQFCWKLETHENNESTAELEYIA--EEFNKKSNSLYTILRSSRIAGSQRAPFLRRFLLRLNFNSFFEATA 768          
BLAST of mRNA_P-littoralis_Contig878.1.1 vs. uniprot
Match: M1D4N5_SOLTU (Gamma-tubulin complex component n=18 Tax=Solanaceae TaxID=4070 RepID=M1D4N5_SOLTU)

HSP 1 Score: 79.7 bits (195), Expect = 6.170e-15
Identity = 48/150 (32.00%), Postives = 81/150 (54.00%), Query Frame = 1
Query:    7 LGPLWMLRARMAFFVSNLAFYLQVDVVEAAYKLLQSKLGAVRDFVSLQRAHQEFLATLRAKFYIDNLEISQGLGRALRHVLRFCCLFALHGDVKDIPPLEVTALRNTFQDEMKLLVPVLE--KLA--------KELMMRLDFNGHFSAEA 426
            L P+W +R  MAF + NL FY+QVDV+E+ + +LQS +   +DF  L   HQE+LA L ++ ++D   +S+ L   ++  L+FC  + +  D  +    E+  +   F  +   L  +L   +LA        ++ ++RL+FN  F A A
Sbjct:  157 LRPMWHVREHMAFLIRNLQFYIQVDVIESQWNVLQSHIQNSQDFTELVGFHQEYLAALISQSFLDIGSVSRILDGIMKLCLQFC--WKIENDESNRTTSELGHIAEEFNKKSNSLYTILRSSRLAGSQRAPFLRQFLLRLNFNSFFEATA 304          
BLAST of mRNA_P-littoralis_Contig878.1.1 vs. uniprot
Match: A0A388JRY8_CHABU (Gamma-tubulin complex component n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388JRY8_CHABU)

HSP 1 Score: 78.2 bits (191), Expect = 8.130e-15
Identity = 46/147 (31.29%), Postives = 78/147 (53.06%), Query Frame = 1
Query:   16 LWMLRARMAFFVSNLAFYLQVDVVEAAYKLLQSKLGAVRDFVSLQRAHQEFLATLRAKFYIDNLEISQGLGRALRHVLRFCCLFALHGDVKDIPPLEVTALRNTFQDEMKLLVPVLE--KLA--------KELMMRLDFNGHFSAEA 426
            +W LR  M + ++NL FY+QVDV+E+  KLLQ ++ A +DF  L R HQE+L+ L  + ++D   IS+ L   ++   + C L        D    E+ +L   F+     L  +L   KL+        ++ ++RL++N +F  +A
Sbjct:   60 MWQLRQHMTYLITNLQFYIQVDVIESQSKLLQERIEASKDFTELTRFHQEYLSALITQSFLDTGSISRILDLIIKLCWQLCKLIEASDATPDTA--EIESLAKLFRQRSISLFTILSSSKLSGSQRAPFLRQFLLRLNYNNYFHNQA 204          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig878.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FV92_ECTSI3.600e-7587.50Spindle pole body component n=2 Tax=Ectocarpus Tax... [more]
T2M448_HYDVU6.160e-1634.69Gamma-tubulin complex component (Fragment) n=1 Tax... [more]
A0A7S3USH3_HETAK6.420e-1648.68Spindle pole body component (Fragment) n=1 Tax=Het... [more]
A0A8B6XWI3_HYDVU8.330e-1634.69Gamma-tubulin complex component n=2 Tax=Hydra vulg... [more]
D8QRE9_SELML2.940e-1530.41Gamma-tubulin complex component n=4 Tax=Selaginell... [more]
A0A2R5GLN9_9STRA3.150e-1532.67Gamma-tubulin complex component 4 n=1 Tax=Hondaea ... [more]
W1NYA3_AMBTC4.030e-1530.87Gamma-tubulin complex component n=2 Tax=Amborella ... [more]
A0A2Z7AVJ4_9LAMI5.520e-1531.76Gamma-tubulin complex component n=1 Tax=Dorcoceras... [more]
M1D4N5_SOLTU6.170e-1532.00Gamma-tubulin complex component n=18 Tax=Solanacea... [more]
A0A388JRY8_CHABU8.130e-1531.29Gamma-tubulin complex component n=1 Tax=Chara brau... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig878contigP-littoralis_Contig878:5..1472 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FV92
Preferred nameTUBGCP4
PFAMsSpc97_Spc98
Model size435
Max annot lvl2759|Eukaryota
KEGG koko:K05544,ko:K14849,ko:K16571
Hectar predicted targeting categorysignal peptide
GOsGO:0000003,GO:0000212,GO:0000226,GO:0000278,GO:0000280,GO:0000578,GO:0000910,GO:0000923,GO:0000930,GO:0000931,GO:0003002,GO:0003006,GO:0003674,GO:0005198,GO:0005200,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005813,GO:0005815,GO:0005819,GO:0005829,GO:0005856,GO:0005911,GO:0006403,GO:0006996,GO:0007010,GO:0007017,GO:0007020,GO:0007049,GO:0007051,GO:0007052,GO:0007056,GO:0007058,GO:0007098,GO:0007112,GO:0007135,GO:0007140,GO:0007143,GO:0007147,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007308,GO:0007309,GO:0007314,GO:0007350,GO:0007351,GO:0007389,GO:0008092,GO:0008150,GO:0008274,GO:0008298,GO:0008358,GO:0008595,GO:0009506,GO:0009605,GO:0009607,GO:0009624,GO:0009790,GO:0009798,GO:0009880,GO:0009948,GO:0009952,GO:0009987,GO:0009994,GO:0012505,GO:0015630,GO:0015631,GO:0016043,GO:0019953,GO:0021700,GO:0022402,GO:0022412,GO:0022414,GO:0022607,GO:0030054,GO:0030154,GO:0030865,GO:0031023,GO:0031109,GO:0031122,GO:0031410,GO:0031982,GO:0032153,GO:0032155,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0033036,GO:0033206,GO:0034622,GO:0035282,GO:0040007,GO:0043015,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043232,GO:0043622,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044450,GO:0044464,GO:0044703,GO:0045450,GO:0046785,GO:0048232,GO:0048285,GO:0048468,GO:0048469,GO:0048477,GO:0048599,GO:0048609,GO:0048856,GO:0048869,GO:0050896,GO:0051179,GO:0051225,GO:0051258,GO:0051298,GO:0051301,GO:0051321,GO:0051415,GO:0051418,GO:0051641,GO:0051704,GO:0051707,GO:0055037,GO:0055044,GO:0060810,GO:0060811,GO:0061640,GO:0061983,GO:0065003,GO:0070727,GO:0070925,GO:0071840,GO:0090306,GO:0090307,GO:0097435,GO:0097708,GO:0140013,GO:0140014,GO:1902850,GO:1903046,GO:1903047
Exons4
Evalue1.65e-69
EggNOG OGsKOG2065@1|root,KOG2065@2759|Eukaryota
EC1.3.1.89
Descriptionmicrotubule nucleation by interphase microtubule organizing center
Cds size414
COG categoryJ
BRITEko00000,ko01000,ko01009,ko03009,ko03016,ko03036,ko04812
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791758.7160463-UTR-P-littoralis_Contig878:4..251680791758.7160463-UTR-P-littoralis_Contig878:4..25Pylaiella littoralis U1_48UTRP-littoralis_Contig878 5..25 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791758.7302153-CDS-P-littoralis_Contig878:25..791680791758.7302153-CDS-P-littoralis_Contig878:25..79Pylaiella littoralis U1_48CDSP-littoralis_Contig878 26..79 +
1680791758.747948-CDS-P-littoralis_Contig878:389..5331680791758.747948-CDS-P-littoralis_Contig878:389..533Pylaiella littoralis U1_48CDSP-littoralis_Contig878 390..533 +
1680791758.760652-CDS-P-littoralis_Contig878:683..8211680791758.760652-CDS-P-littoralis_Contig878:683..821Pylaiella littoralis U1_48CDSP-littoralis_Contig878 684..821 +
1680791758.7719562-CDS-P-littoralis_Contig878:1394..14721680791758.7719562-CDS-P-littoralis_Contig878:1394..1472Pylaiella littoralis U1_48CDSP-littoralis_Contig878 1395..1472 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig878.1.1prot_P-littoralis_Contig878.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig878 26..1472 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig878.1.1

>prot_P-littoralis_Contig878.1.1 ID=prot_P-littoralis_Contig878.1.1|Name=mRNA_P-littoralis_Contig878.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=138bp
MLRARMAFFVSNLAFYLQVDVVEAAYKLLQSKLGAVRDFVSLQRAHQEFL
ATLRAKFYIDNLEISQGLGRALRHVLRFCCLFALHGDVKDIPPLEVTALR
NTFQDEMKLLVPVLEKLAKELMMRLDFNGHFSAEALY*
back to top

mRNA from alignment at P-littoralis_Contig878:5..1472+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig878.1.1 ID=mRNA_P-littoralis_Contig878.1.1|Name=mRNA_P-littoralis_Contig878.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1468bp|location=Sequence derived from alignment at P-littoralis_Contig878:5..1472+ (Pylaiella littoralis U1_48)
GCGTGGCTGGGCCCCCTCTGGATGCTGAGAGCACGCATGGCCTTCTTCGT GTCGAACCTGGCATTCTACTTGCAGGTGGGCGTGCATGATCGCGAAATAA ATACCTGGTAGTACGGAGTATGCGAAGTATTACGGTGTATGTACTCTTTC CCTCAAGCTGTGGCGTTCAGCATAGCAGTGCAGGAGGTCGTCTTGCGTTT TTGTTCTCGCATGTAACAACAGAAGAGTATCTGACAACGTGGGCAGACCA CAGCCGCAGCATGATGGCCGCAACTGCGCAGTTTTTGCCTGTATATTCGA ATGCATACCAATTTTTCCCTCCAACGCATAGGTTCACTCTGCCGTCCTTC TGCTGTGTTGTGTTATTTTCAACCGTCGGGACAAGGTGGACGTGGTTGAA GCGGCGTACAAGCTGCTTCAGAGCAAACTGGGGGCGGTTCGAGACTTTGT CAGCCTTCAACGGGCTCACCAGGAGTTCTTGGCCACCCTCCGCGCCAAGT TTTACATAGATAACCTCGAGATATCCCAGGTGCGCTTGTCGACATGTAGC GTTTGCCTATAACGGATCGAGGTACAACCACCCTGCCGGGCAAAATGAAT CAGCACTGCGTTTGTCGGAATTGGGCCGCGAGTGCGACCAGCGTAGCAAC CAACGTATGGCCGTTGCCGTTTATGTCAGGGATTGGGCCGTGCGCTTCGG CACGTGCTGCGGTTCTGCTGCCTTTTTGCCTTGCACGGCGACGTCAAGGA CATCCCCCCCTTGGAGGTCACGGCACTGCGAAACACCTTCCAAGATGAGA TGAAGCTCCTCGTTCCGGTGAGCCATGCTCATCGAGTCGTCCTCATCGGT CGCGCTTGTTGCTCTGCTTCTTGATTCACGTTGTCAAGCGAAATGTTTCG TTGCGCACGTATCATAGCACGAAGAAGGCTGCATTTTCGGAGCGATTTTT AATGTGCTCTTGAGGGGTGGGAGAGGGACGGGTGCCGCAAGACCCACTGG GACAGAGACGAAAAAAAAATCACCGCGAACCTAGTGTAAATTTAGTGATG GAAGCGCGGCAGTCATTTGCCACACGTTGGGTATAACGTCCGTCGTCGTC TGTGCGTGCTGGTAGCTCTATTCTCCGTTTTTGACGAACGCGAACTATCG AGGTAGCCTTTGGGCTGAAAAAACGTAAACGTTGTTGCCATTGTTCAGCC CGCTCTTCTGTCTCCCTCGGAGGTCTTTTCTCCACTCAAAACCAGTCTCG CAGGGACCGTTTCGGGATCTATCGGCTGGCACCGCCAGTAGACCTTGAAG AACAACTATATACCATGTGTGTTTCACAGCTTCGATGTGGGTATCGCATT GAATCCGGAACGTACTGCTGTCGGTCGCGTGTACTCACAGGTGTTGGAAA AGCTCGCCAAGGAGCTCATGATGCGCTTAGACTTCAACGGACACTTCTCA GCAGAGGCCTTGTACTAG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig878:5..1472+

>mRNA_P-littoralis_Contig878.1.1 ID=mRNA_P-littoralis_Contig878.1.1|Name=mRNA_P-littoralis_Contig878.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=414bp|location=Sequence derived from alignment at P-littoralis_Contig878:5..1472+ (Pylaiella littoralis U1_48)
ATGCTGAGAGCACGCATGGCCTTCTTCGTGTCGAACCTGGCATTCTACTT
GCAGGTGGACGTGGTTGAAGCGGCGTACAAGCTGCTTCAGAGCAAACTGG
GGGCGGTTCGAGACTTTGTCAGCCTTCAACGGGCTCACCAGGAGTTCTTG
GCCACCCTCCGCGCCAAGTTTTACATAGATAACCTCGAGATATCCCAGGG
ATTGGGCCGTGCGCTTCGGCACGTGCTGCGGTTCTGCTGCCTTTTTGCCT
TGCACGGCGACGTCAAGGACATCCCCCCCTTGGAGGTCACGGCACTGCGA
AACACCTTCCAAGATGAGATGAAGCTCCTCGTTCCGGTGTTGGAAAAGCT
CGCCAAGGAGCTCATGATGCGCTTAGACTTCAACGGACACTTCTCAGCAG
AGGCCTTGTACTAG
back to top