mRNA_P-littoralis_Contig877.9.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig877.9.1
Unique NamemRNA_P-littoralis_Contig877.9.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig877.9.1 vs. uniprot
Match: A0A6H5JQG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQG9_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 1.530e-24
Identity = 47/81 (58.02%), Postives = 58/81 (71.60%), Query Frame = 2
Query:   68 LLAEIFPPEGGN-GEEDMRTYFASWSPYRIRKVHVEHIGKNEIYRPGSELDGIDGTRVMYHFAGANIPSHQAATTTDGLQD 307
             L   F  + G+ GEE MR YFA WSPYR+R+VHVE IGK E+YRP S L+G++GTR MYHFAGAN P    +T+T G +D
Sbjct:  217 FLRSFFREKAGSEGEEGMRRYFAKWSPYRMRRVHVEIIGKKEVYRPNSILEGVEGTREMYHFAGANTPKWDGSTSTKGRED 297          
BLAST of mRNA_P-littoralis_Contig877.9.1 vs. uniprot
Match: A0A6H5JFY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFY7_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 1.610e-24
Identity = 47/81 (58.02%), Postives = 57/81 (70.37%), Query Frame = 2
Query:   68 LLAEIFPPEGGN-GEEDMRTYFASWSPYRIRKVHVEHIGKNEIYRPGSELDGIDGTRVMYHFAGANIPSHQAATTTDGLQD 307
             L   F  + G+ GEE MR YFA WSPY +R+VHVE IGK EIYRP S L+G++GTR MYHFAGAN P    +T+T G +D
Sbjct:  143 FLRSFFREKAGSEGEEGMRRYFAKWSPYPMRRVHVEFIGKKEIYRPNSILEGVEGTREMYHFAGANTPEWDGSTSTKGRED 223          
BLAST of mRNA_P-littoralis_Contig877.9.1 vs. uniprot
Match: A0A6H5KI10_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI10_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 1.720e-24
Identity = 48/80 (60.00%), Postives = 58/80 (72.50%), Query Frame = 2
Query:   68 LLAEIFPPEGGN-GEEDMRTYFASWSPYRIRKVHVEHIGKNEIYRPGSELDGIDGTRVMYHFAGANIPSHQAATTTDGLQ 304
             L   F  + G+ GEE MR YFA WSPYR+R+VH E IGK EIYRP S L+G++GTR MYHFAGAN P    +TTT+GL+
Sbjct:  695 FLRSFFEEKAGSEGEEGMRRYFAKWSPYRMRRVHFEFIGKKEIYRPNSILEGVEGTREMYHFAGANTPKWDGSTTTEGLE 774          
BLAST of mRNA_P-littoralis_Contig877.9.1 vs. uniprot
Match: A0A6H5J952_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J952_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 3.660e-24
Identity = 48/81 (59.26%), Postives = 56/81 (69.14%), Query Frame = 2
Query:   68 LLAEIFPPEGGN-GEEDMRTYFASWSPYRIRKVHVEHIGKNEIYRPGSELDGIDGTRVMYHFAGANIPSHQAATTTDGLQD 307
             L   F  + G+ GEE MR YFA WSPYR+R+VHVE IGK E+YRP S L G +GTR MYHFAGAN P    +TTT+G  D
Sbjct:  201 FLRSFFREKAGSEGEEGMRKYFAKWSPYRMRRVHVEFIGKKEMYRPNSVLAGTEGTRDMYHFAGANTPKWDGSTTTEGRVD 281          
BLAST of mRNA_P-littoralis_Contig877.9.1 vs. uniprot
Match: A0A6H5L2L6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2L6_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 7.980e-24
Identity = 52/86 (60.47%), Postives = 61/86 (70.93%), Query Frame = 2
Query:   68 LLAEIFPPEGGN-GEEDMRTYFASWSPYRIRKVHVEHIGKNEIYRPGSELDGIDGTRVMYHFAGANIPSHQAATTTDGLQ-DIELV 319
             L   F  + G+ G E MR YFA WSPYR+R+VHVE IGK EIYRP S L GI+GTR MYHFAGAN P    +TTT+GL+ D +LV
Sbjct:  489 FLRSFFREKAGSEGGEGMRKYFAKWSPYRMRRVHVECIGKKEIYRPNSVLAGIEGTRDMYHFAGANTPKWDGSTTTEGLENDCKLV 574          
BLAST of mRNA_P-littoralis_Contig877.9.1 vs. uniprot
Match: A0A6H5L293_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L293_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 2.780e-23
Identity = 47/81 (58.02%), Postives = 57/81 (70.37%), Query Frame = 2
Query:   68 LLAEIFPPEGGN-GEEDMRTYFASWSPYRIRKVHVEHIGKNEIYRPGSELDGIDGTRVMYHFAGANIPSHQAATTTDGLQD 307
             L   F  + G+ GEE MR YFA WSPYR+R+VHVE I K EIYRP S L+G++GTR MYHFAGAN P    +T+T G +D
Sbjct:  523 FLRSFFREKAGSEGEEGMRRYFAKWSPYRMRRVHVEFISKKEIYRPNSILEGVEGTREMYHFAGANTPKWDGSTSTKGRED 603          
BLAST of mRNA_P-littoralis_Contig877.9.1 vs. uniprot
Match: A0A6H5KTJ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTJ4_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 8.950e-23
Identity = 45/82 (54.88%), Postives = 54/82 (65.85%), Query Frame = 2
Query:   62 GGLLAEIFPPEGGNGEEDMRTYFASWSPYRIRKVHVEHIGKNEIYRPGSELDGIDGTRVMYHFAGANIPSHQAATTTDGLQD 307
            GG+           GEE  R YFA WSPYR+R+VHVE IGK EIYRP S L+G++GTR MYH AGAN P    +T+T G +D
Sbjct:  296 GGVAKNAMKRRESEGEESTRKYFAKWSPYRMRRVHVEFIGKKEIYRPNSILEGVEGTREMYHCAGANTPKRDGSTSTKGRED 377          
BLAST of mRNA_P-littoralis_Contig877.9.1 vs. uniprot
Match: A0A6H5JLE6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLE6_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 3.280e-22
Identity = 45/71 (63.38%), Postives = 52/71 (73.24%), Query Frame = 2
Query:   95 GGNGEEDMRTYFASWSPYRIRKVHVEHIGKNEIYRPGSELDGIDGTRVMYHFAGANIPSHQAATTTDGLQD 307
            G  GEE MR YFA WSPYR+R+VHVE IG  EI RP S L G++GT  MYHFAGAN P    +TTT+GL+D
Sbjct:  238 GSEGEEGMRKYFAKWSPYRMRRVHVEFIGNKEISRPNSVLAGLEGTLDMYHFAGANNPKWDGSTTTEGLED 308          
BLAST of mRNA_P-littoralis_Contig877.9.1 vs. uniprot
Match: A0A6H5L7F4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F4_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 1.220e-21
Identity = 44/81 (54.32%), Postives = 55/81 (67.90%), Query Frame = 2
Query:   68 LLAEIFPPEGGN-GEEDMRTYFASWSPYRIRKVHVEHIGKNEIYRPGSELDGIDGTRVMYHFAGANIPSHQAATTTDGLQD 307
             L   F  + G+ GEE MR +FA WSPYR+R+VHVE +GK EIYRP S L+G++GTR MYH AG N P    +T+T G  D
Sbjct:  249 FLRSFFREKAGSEGEEGMRRFFARWSPYRMRRVHVEFMGKKEIYRPNSILEGVEGTREMYHLAGPNTPEWDGSTSTKGRGD 329          
BLAST of mRNA_P-littoralis_Contig877.9.1 vs. uniprot
Match: A0A6H5KLE4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLE4_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 3.180e-21
Identity = 48/81 (59.26%), Postives = 55/81 (67.90%), Query Frame = 2
Query:   68 LLAEIFPPEGGN-GEEDMRTYFASWSPYRIRKVHVEHIGKNEIYRPGSELDGIDGTRVMYHFAGANIPSHQAATTTDGLQD 307
             L   F  + G+ GEE MR YFA WSPYR+R+V VE IGK EIYR  S L GI+GTR MYHFAGAN P     TTT+G +D
Sbjct:    9 FLRSFFREKAGSEGEEGMR-YFAKWSPYRMRRVQVEFIGKKEIYRLNSVLAGIEGTRDMYHFAGANTPKWDGFTTTEGRED 88          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig877.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
A0A6H5JQG9_9PHAE1.530e-2458.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JFY7_9PHAE1.610e-2458.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KI10_9PHAE1.720e-2460.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J952_9PHAE3.660e-2459.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L2L6_9PHAE7.980e-2460.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L293_9PHAE2.780e-2358.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KTJ4_9PHAE8.950e-2354.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JLE6_9PHAE3.280e-2263.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L7F4_9PHAE1.220e-2154.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KLE4_9PHAE3.180e-2159.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig877contigP-littoralis_Contig877:14018..14337 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size320
Hectar predicted targeting categoryother localisation
Exons1
Cds size213
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791758.4216115-UTR-P-littoralis_Contig877:14017..140281680791758.4216115-UTR-P-littoralis_Contig877:14017..14028Pylaiella littoralis U1_48UTRP-littoralis_Contig877 14018..14028 +
1680791758.4496436-UTR-P-littoralis_Contig877:14241..143371680791758.4496436-UTR-P-littoralis_Contig877:14241..14337Pylaiella littoralis U1_48UTRP-littoralis_Contig877 14242..14337 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791758.4360645-CDS-P-littoralis_Contig877:14028..142411680791758.4360645-CDS-P-littoralis_Contig877:14028..14241Pylaiella littoralis U1_48CDSP-littoralis_Contig877 14029..14241 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig877.9.1prot_P-littoralis_Contig877.9.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig877 14029..14241 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig877.9.1

>prot_P-littoralis_Contig877.9.1 ID=prot_P-littoralis_Contig877.9.1|Name=mRNA_P-littoralis_Contig877.9.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=71bp
MKNHERFGKRIVGANKVVDFLRKFFRQKGATVKRTCGRTSRHGLRTASAR
CTWSISARTRSTGPARSWTV*
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mRNA from alignment at P-littoralis_Contig877:14018..14337+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig877.9.1 ID=mRNA_P-littoralis_Contig877.9.1|Name=mRNA_P-littoralis_Contig877.9.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=320bp|location=Sequence derived from alignment at P-littoralis_Contig877:14018..14337+ (Pylaiella littoralis U1_48)
CAAATAATGCCATGAAGAACCATGAGCGGTTTGGCAAGCGCATCGTGGGG GCGAACAAGGTGGTGGACTTCTTGCGGAAATTTTTCCGCCAGAAGGGGGC AACGGTGAAGAGGACATGCGGACGTACTTCGCGTCATGGTCTCCGTACCG CATCCGCAAGGTGCACGTGGAGCATATCGGCAAGAACGAGATCTACCGGC CCGGCTCGGAGCTGGACGGTATAGACGGAACGCGTGTGATGTACCACTTT GCGGGAGCGAACATTCCGAGCCACCAAGCGGCTACCACAACGGACGGACT GCAAGACATCGAGCTAGTGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig877:14018..14337+

>mRNA_P-littoralis_Contig877.9.1 ID=mRNA_P-littoralis_Contig877.9.1|Name=mRNA_P-littoralis_Contig877.9.1|organism=Pylaiella littoralis U1_48|type=CDS|length=213bp|location=Sequence derived from alignment at P-littoralis_Contig877:14018..14337+ (Pylaiella littoralis U1_48)
ATGAAGAACCATGAGCGGTTTGGCAAGCGCATCGTGGGGGCGAACAAGGT
GGTGGACTTCTTGCGGAAATTTTTCCGCCAGAAGGGGGCAACGGTGAAGA
GGACATGCGGACGTACTTCGCGTCATGGTCTCCGTACCGCATCCGCAAGG
TGCACGTGGAGCATATCGGCAAGAACGAGATCTACCGGCCCGGCTCGGAG
CTGGACGGTATAG
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