mRNA_P-littoralis_Contig877.28.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig877.28.1
Unique NamemRNA_P-littoralis_Contig877.28.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig877.28.1 vs. uniprot
Match: A0A6H5KKJ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKJ8_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 2.150e-19
Identity = 38/60 (63.33%), Postives = 48/60 (80.00%), Query Frame = 2 
Query:    2 YCLATRVRNQVYHEAAKDLGCYGAGNQCKAGKCMSAALGVFAGKGNAAVPTETVRALCKF 181
            YC+A RVRNQVY++ AKDLGC+G GNQ KAG+CM AA  VFAG GN  +PTE V+A+ ++
Sbjct:   30 YCVAKRVRNQVYYDTAKDLGCFGRGNQLKAGECMRAATKVFAGDGNDGLPTEVVKAMLQY 89
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BLAST of mRNA_P-littoralis_Contig877.28.1 vs. uniprot
Match: A0A6H5JMB2_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMB2_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 3.700e-18
Identity = 38/60 (63.33%), Postives = 45/60 (75.00%), Query Frame = 2 
Query:    2 YCLATRVRNQVYHEAAKDLGCYGAGNQCKAGKCMSAALGVFAGKGNAAVPTETVRALCKF 181
            YCLA RVRNQVY++   DL   GAGNQC A +CM AAL VF+GKGN  +PTE VRA+C +
Sbjct:   19 YCLAKRVRNQVYYDTPTDLLAKGAGNQCTAAECMVAALKVFSGKGNKGIPTEIVRAMCMY 78
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BLAST of mRNA_P-littoralis_Contig877.28.1 vs. uniprot
Match: A0A6H5KHG3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHG3_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 3.970e-17
Identity = 37/59 (62.71%), Postives = 45/59 (76.27%), Query Frame = 2 
Query:    2 YCLATRVRNQVYHEAAKDLGCYGAGNQCKAGKCMSAALGVFAGKGNAAVPTETVRALCK 178
            YCLA RVRNQVY++ + DL C+G GNQC AG CM AAL VFAG+    +P+E VRA+CK
Sbjct:  121 YCLAKRVRNQVYYDTSIDLDCHGKGNQCSAGTCMKAALQVFAGEARDGIPSEIVRAMCK 179
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BLAST of mRNA_P-littoralis_Contig877.28.1 vs. uniprot
Match: A0A6H5KG83_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG83_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 6.800e-17
Identity = 37/57 (64.91%), Postives = 45/57 (78.95%), Query Frame = 2 
Query:    2 YCLATRVRNQVYHEAAKDLGCYGAGNQCKAGKCMSAALGVFAGKGNAAVPTETVRAL 172
            YC+A RVRNQ Y++ AKDLGC+G GNQ KAG+CM AA  VFAG GN  +PTE V+A+
Sbjct:  121 YCVAKRVRNQGYYDTAKDLGCFGRGNQLKAGECMCAATKVFAGDGNDGLPTEVVKAM 177
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BLAST of mRNA_P-littoralis_Contig877.28.1 vs. uniprot
Match: D7G5X1_ECTSI (Ubiquitinyl hydrolase 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5X1_ECTSI)

HSP 1 Score: 79.0 bits (193), Expect = 2.030e-16
Identity = 38/59 (64.41%), Postives = 43/59 (72.88%), Query Frame = 2 
Query:    2 YCLATRVRNQVYHEAAKDLGCYGAGNQCKAGKCMSAALGVFAGKGNAAVPTETVRALCK 178
            YCLA RVR+QVY+ A+ DL C G GNQC AG CM AA  V+AG G   VP ETVRA+CK
Sbjct:   79 YCLAKRVRHQVYYGASADLLCKGMGNQCTAGACMRAAAQVYAGDGTDGVPAETVRAMCK 137
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BLAST of mRNA_P-littoralis_Contig877.28.1 vs. uniprot
Match: A0A6H5KBF5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBF5_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 5.200e-15
Identity = 36/59 (61.02%), Postives = 40/59 (67.80%), Query Frame = 2 
Query:    2 YCLATRVRNQVYHEAAKDLGCYGAGNQCKAGKCMSAALGVFAGKGNAAVPTETVRALCK 178
            YCLA RVR QVY+EA+ DL C G  NQC AG CM AA  V+   G   VP ETVRA+CK
Sbjct:   16 YCLANRVRYQVYYEASADLLCKGMDNQCTAGACMRAAAQVYVEDGTDGVPAETVRAMCK 74
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig877.28.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5KKJ8_9PHAE2.150e-1963.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMB2_9PHAE3.700e-1863.33Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KHG3_9PHAE3.970e-1762.71Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KG83_9PHAE6.800e-1764.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G5X1_ECTSI2.030e-1664.41Ubiquitinyl hydrolase 1 n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KBF5_9PHAE5.200e-1561.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig877contigP-littoralis_Contig877:43576..43923 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size348
Hectar predicted targeting categoryother localisation
Exons1
Cds size315
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791758.1772256-CDS-P-littoralis_Contig877:43575..438901680791758.1772256-CDS-P-littoralis_Contig877:43575..43890Pylaiella littoralis U1_48CDSP-littoralis_Contig877 43576..43890 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791758.1962647-UTR-P-littoralis_Contig877:43890..439231680791758.1962647-UTR-P-littoralis_Contig877:43890..43923Pylaiella littoralis U1_48UTRP-littoralis_Contig877 43891..43923 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig877.28.1prot_P-littoralis_Contig877.28.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig877 43576..43890 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig877.28.1

>prot_P-littoralis_Contig877.28.1 ID=prot_P-littoralis_Contig877.28.1|Name=mRNA_P-littoralis_Contig877.28.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=105bp
VLPRDACAQPGLSRGRKGSRVLWSRQPVQGWEVHERSSWRFRRQGQCRRP
DRDCSGALQILVLFNQVLGRICSSSRNRRCRYPRRARIMAVLQASYFIQE
RLCS*
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mRNA from alignment at P-littoralis_Contig877:43576..43923+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig877.28.1 ID=mRNA_P-littoralis_Contig877.28.1|Name=mRNA_P-littoralis_Contig877.28.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=348bp|location=Sequence derived from alignment at P-littoralis_Contig877:43576..43923+ (Pylaiella littoralis U1_48)
GTATTGCCTCGCGACGCGTGTGCGCAACCAGGTCTATCACGAGGCCGCAA
AGGATCTCGGGTGCTATGGAGCCGGCAACCAGTGCAAGGCTGGGAAGTGC
ATGAGCGCAGCTCTTGGCGTTTTCGCCGGCAAGGGCAATGCCGCCGTCCC
GACCGAGACTGTTCGGGCGCTCTGCAAATTCTAGTTTTATTTAATCAAGT
GCTCGGTCGCATATGTTCTAGTTCAAGAAATCGTAGGTGTCGTTATCCAC
GGAGAGCGCGGATTATGGCCGTATTGCAAGCATCATACTTTATACAAGAG
CGTCTGTGTTCATAAAATATGAAGTAGGAGTAAAGAAACGTGAATATC
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Coding sequence (CDS) from alignment at P-littoralis_Contig877:43576..43923+

>mRNA_P-littoralis_Contig877.28.1 ID=mRNA_P-littoralis_Contig877.28.1|Name=mRNA_P-littoralis_Contig877.28.1|organism=Pylaiella littoralis U1_48|type=CDS|length=315bp|location=Sequence derived from alignment at P-littoralis_Contig877:43576..43923+ (Pylaiella littoralis U1_48)
GTATTGCCTCGCGACGCGTGTGCGCAACCAGGTCTATCACGAGGCCGCAA
AGGATCTCGGGTGCTATGGAGCCGGCAACCAGTGCAAGGCTGGGAAGTGC
ATGAGCGCAGCTCTTGGCGTTTTCGCCGGCAAGGGCAATGCCGCCGTCCC
GACCGAGACTGTTCGGGCGCTCTGCAAATTCTAGTTTTATTTAATCAAGT
GCTCGGTCGCATATGTTCTAGTTCAAGAAATCGTAGGTGTCGTTATCCAC
GGAGAGCGCGGATTATGGCCGTATTGCAAGCATCATACTTTATACAAGAG
CGTCTGTGTTCATAA
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