mRNA_P-littoralis_Contig876.27.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig876.27.1
Unique NamemRNA_P-littoralis_Contig876.27.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig876.27.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig876contigP-littoralis_Contig876:54075..54445 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size371
Hectar predicted targeting categoryother localisation
Exons1
Cds size300
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791757.4715717-UTR-P-littoralis_Contig876:54074..540821680791757.4715717-UTR-P-littoralis_Contig876:54074..54082Pylaiella littoralis U1_48UTRP-littoralis_Contig876 54075..54082 -
1680791757.5054297-UTR-P-littoralis_Contig876:54382..544451680791757.5054297-UTR-P-littoralis_Contig876:54382..54445Pylaiella littoralis U1_48UTRP-littoralis_Contig876 54383..54445 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791757.4876094-CDS-P-littoralis_Contig876:54082..543821680791757.4876094-CDS-P-littoralis_Contig876:54082..54382Pylaiella littoralis U1_48CDSP-littoralis_Contig876 54083..54382 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig876.27.1prot_P-littoralis_Contig876.27.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig876 54083..54382 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig876.27.1

>prot_P-littoralis_Contig876.27.1 ID=prot_P-littoralis_Contig876.27.1|Name=mRNA_P-littoralis_Contig876.27.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=100bp
MKTLITPLFMETVLSVSGRRKQSEVKVCSNVDQHLGGTCPIFRRYRTAAY
THVYGRHIWTSKVKFVKFFRSSISLPTWVNTSSKVSSNFSKPAQTGPNR*
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mRNA from alignment at P-littoralis_Contig876:54075..54445-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig876.27.1 ID=mRNA_P-littoralis_Contig876.27.1|Name=mRNA_P-littoralis_Contig876.27.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=371bp|location=Sequence derived from alignment at P-littoralis_Contig876:54075..54445- (Pylaiella littoralis U1_48)
GGGTATTTCGTTCCTCGTTTCGGTCTATTATTTCACAGATCGGGCGAGAG
AGCCGAATCGATAATGAAGACCCTAATAACCCCCCTGTTTATGGAAACCG
TACTGTCGGTATCTGGCCGTCGAAAGCAGTCGGAAGTGAAAGTTTGCTCA
AATGTCGATCAACATTTAGGGGGCACATGTCCCATTTTTCGAAGATATCG
TACTGCTGCTTACACCCATGTTTATGGTCGCCATATCTGGACGTCAAAAG
TTAAGTTTGTCAAATTTTTCCGATCATCTATTTCACTGCCTACATGGGTA
AATACGTCGTCCAAAGTGTCGTCAAACTTTTCCAAACCGGCCCAAACTGG
GCCAAATCGGTAAAAGTTGGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig876:54075..54445-

>mRNA_P-littoralis_Contig876.27.1 ID=mRNA_P-littoralis_Contig876.27.1|Name=mRNA_P-littoralis_Contig876.27.1|organism=Pylaiella littoralis U1_48|type=CDS|length=300bp|location=Sequence derived from alignment at P-littoralis_Contig876:54075..54445- (Pylaiella littoralis U1_48)
ATGAAGACCCTAATAACCCCCCTGTTTATGGAAACCGTACTGTCGGTATC
TGGCCGTCGAAAGCAGTCGGAAGTGAAAGTTTGCTCAAATGTCGATCAAC
ATTTAGGGGGCACATGTCCCATTTTTCGAAGATATCGTACTGCTGCTTAC
ACCCATGTTTATGGTCGCCATATCTGGACGTCAAAAGTTAAGTTTGTCAA
ATTTTTCCGATCATCTATTTCACTGCCTACATGGGTAAATACGTCGTCCA
AAGTGTCGTCAAACTTTTCCAAACCGGCCCAAACTGGGCCAAATCGGTAA
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