mRNA_P-littoralis_Contig875.4.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig875.4.1
Unique NamemRNA_P-littoralis_Contig875.4.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig875.4.1 vs. uniprot
Match: D7FZG9_ECTSI (EsV-1-213 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZG9_ECTSI)

HSP 1 Score: 889 bits (2298), Expect = 0.000e+0
Identity = 456/585 (77.95%), Postives = 497/585 (84.96%), Query Frame = 3
Query:  564 SSVYTSCSKALALLYFAVVVLGRPCCLESVILPISVTERSILE*TWGCPGQHLDGPINKFQTNWREVFRAIGTPHRNINCVCLEKATEEI*IGGKHVADCFALYNATRSDPGDAKATTALVNHYRLNSKIGVESGAVVYVLDVLREKPMEAVGKIDGSVLGAITSSYGQDVSLDVQARCLGLQAGAHSLFDSSVSNKLGEIINHADMTLWKARKRLKVELKVNENLDPADMNKKISQGKMLDPCDPALSEKMHAMLQGLSRAVWRPLKTVIGEALGASTEHPSAFLRISDKEARQLYEHAERKGMGYADVANLCILLVLSNSF*RSQVLSEAPLNEFGLSPDGTHYRQTFK-RPFKTAGASRGTLPVSHFNLSPGQSMMVHLIAMVGHWFCNANMQDDQRNLFLNSKGQAWAQPDIASRAKKIGAHWLGLPNFCIHTFRTFWATAALNSGQVDPSNKDEFSSFLQVSSATLRTSYMSAAGYGQAHIIGKSVLGGVVNSACLGETT-EKGAKPSTKKLGARRMEFIAEIRASLLKHAGKTRLLFRHLVSKREAGQLEEGEKWFMWDRTFFEDGDDRNFKKFVDGHV 2312
            SSVYTSCSKAL+L+YF VV+LGRPCCLESVILP+SVTERS+LE TWGCPG HLDGPINKFQTNWREVFRAIGTPHRNIN VCLE+ATEE  IGGKHVADCFALYNATRS PGDAK    LVNHYRLNSKIGVESGAVV VLDVLREKPMEAVGKIDGSVLGAITS+YG+ VSLDVQARCLGLQAG HSLFDSSVSNKLGEIINHAD  LWKARKRLKVELKVN++LDPADMNKKIS+GKMLDPCDPA SEKMHAMLQ +SR VW PLKT+IGEALG S +HPSAFLRISD+EA +LYEHA  KGM   DVANL  LLVLSNSF RSQVL EA LNEFGL PDGT YRQTFK R FKTAGAS G+ PVSHFNLSPGQSMMVH IA+VGH FC+A+M+D +R L LNSKG+ + Q DI S  KKIGAHWLGLPNFC+HT RTFWATAALNSGQVDPSN ++F SFLQVSS+TLR+SYMSAAG   AH +G  VLG VV SA  GETT E+G  P   KL   RMEF+ EIRASLLKH+G  +LLFR LV KR+ GQLE+ EKWF  + TF++D  +R F +FV G V
Sbjct:   12 SSVYTSCSKALSLMYFTVVILGRPCCLESVILPLSVTERSVLEQTWGCPGTHLDGPINKFQTNWREVFRAIGTPHRNINYVCLERATEESYIGGKHVADCFALYNATRSAPGDAKTIAGLVNHYRLNSKIGVESGAVVCVLDVLREKPMEAVGKIDGSVLGAITSTYGKRVSLDVQARCLGLQAGEHSLFDSSVSNKLGEIINHADTKLWKARKRLKVELKVNDSLDPADMNKKISEGKMLDPCDPASSEKMHAMLQSISRQVWLPLKTLIGEALGVSMDHPSAFLRISDEEAHRLYEHASTKGMVSTDVANLNTLLVLSNSFQRSQVLREATLNEFGLVPDGTFYRQTFKDRAFKTAGASSGSPPVSHFNLSPGQSMMVHFIAVVGHRFCDADMKDSKRKLLLNSKGRGYVQNDINSPFKKIGAHWLGLPNFCVHTCRTFWATAALNSGQVDPSNIEDFGSFLQVSSSTLRSSYMSAAGNSAAHALGHEVLGSVVTSATSGETTTEQGDAPQGPKLRRIRMEFVGEIRASLLKHSGNAKLLFRDLVKKRKVGQLEDSEKWFRRENTFWKDDGERVFLRFVGGCV 596          
BLAST of mRNA_P-littoralis_Contig875.4.1 vs. uniprot
Match: Q8QN77_ESV1K (EsV-1-213 n=2 Tax=root TaxID=1 RepID=Q8QN77_ESV1K)

HSP 1 Score: 889 bits (2298), Expect = 1.940e-315
Identity = 456/585 (77.95%), Postives = 496/585 (84.79%), Query Frame = 3
Query:  564 SSVYTSCSKALALLYFAVVVLGRPCCLESVILPISVTERSILE*TWGCPGQHLDGPINKFQTNWREVFRAIGTPHRNINCVCLEKATEEI*IGGKHVADCFALYNATRSDPGDAKATTALVNHYRLNSKIGVESGAVVYVLDVLREKPMEAVGKIDGSVLGAITSSYGQDVSLDVQARCLGLQAGAHSLFDSSVSNKLGEIINHADMTLWKARKRLKVELKVNENLDPADMNKKISQGKMLDPCDPALSEKMHAMLQGLSRAVWRPLKTVIGEALGASTEHPSAFLRISDKEARQLYEHAERKGMGYADVANLCILLVLSNSF*RSQVLSEAPLNEFGLSPDGTHYRQTFK-RPFKTAGASRGTLPVSHFNLSPGQSMMVHLIAMVGHWFCNANMQDDQRNLFLNSKGQAWAQPDIASRAKKIGAHWLGLPNFCIHTFRTFWATAALNSGQVDPSNKDEFSSFLQVSSATLRTSYMSAAGYGQAHIIGKSVLGGVVNSACLGETT-EKGAKPSTKKLGARRMEFIAEIRASLLKHAGKTRLLFRHLVSKREAGQLEEGEKWFMWDRTFFEDGDDRNFKKFVDGHV 2312
            SSVYTSCSKAL+L+YF VV+LGRPCCLESVILP+SVTERS+LE TWGCPG HLDGPINKFQTNWREVFRAIGTPHR+IN VCLE+ATEE  IGGKHVADCFALYNATRS PGDAK    L NHYRLNSKIGVESGAVV VLDVLREKPMEAVGKIDGSVLGAITS+YGQ VSLDVQARCLGLQAG HSLFD SVSNKLGEIINHAD+ LWKARKRLKVELKVN++LDPADMNKKIS+GKMLDPCDPA SEKMHAMLQ +SR VW PLKT+IGEALG S +HPSAFLRISD+EA +LYEHA  KGM YAD+ANL  LLVLSNSF RSQVL EA LNEFGL PDGT YRQTFK R FKTAGAS G+ PVSHFNLSPGQSMMVH IA+VGH FCNA+M+D +R L LNSKG+   Q DI S  KKIGAHWLGLPNFC+HT RTFWATAALNSGQVDPSN ++F SFLQVSS+TLR+SYMSAAG   AH +G  VLG VV SA  GETT E+G  P   KL   RMEF+ EIRASLLKH+G  +LLFR LV KR+ GQL EGE WF  + TF++D  +R F +FV G V
Sbjct:  202 SSVYTSCSKALSLMYFTVVILGRPCCLESVILPLSVTERSVLEQTWGCPGTHLDGPINKFQTNWREVFRAIGTPHRSINYVCLERATEESYIGGKHVADCFALYNATRSAPGDAKTIAGLANHYRLNSKIGVESGAVVCVLDVLREKPMEAVGKIDGSVLGAITSTYGQRVSLDVQARCLGLQAGEHSLFDCSVSNKLGEIINHADIALWKARKRLKVELKVNDSLDPADMNKKISEGKMLDPCDPASSEKMHAMLQSISRQVWLPLKTLIGEALGVSMDHPSAFLRISDEEAHRLYEHASTKGMVYADIANLNTLLVLSNSFQRSQVLREATLNEFGLVPDGTFYRQTFKDRAFKTAGASSGSPPVSHFNLSPGQSMMVHFIAVVGHRFCNADMKDSKRKLLLNSKGRGCVQNDINSPFKKIGAHWLGLPNFCVHTCRTFWATAALNSGQVDPSNIEDFGSFLQVSSSTLRSSYMSAAGNSAAHTLGHEVLGSVVTSATSGETTTEQGDAPQGPKLRRIRMEFVGEIRASLLKHSGNAKLLFRDLVKKRKVGQLGEGEIWFRRENTFWKDDGERVFLRFVGGCV 786          
BLAST of mRNA_P-littoralis_Contig875.4.1 vs. uniprot
Match: A0A6H5JJP2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJP2_9PHAE)

HSP 1 Score: 902 bits (2330), Expect = 1.490e-312
Identity = 460/582 (79.04%), Postives = 497/582 (85.40%), Query Frame = 3
Query:  564 SSVYTSCSKALALLYFAVVVLGRPCCLESVILPISVTERSILE*TWGCPGQHLDGPINKFQTNWREVFRAIGTPHRNINCVCLEKATEEI*IGGKHVADCFALYNATRSDPGDAKATTALVNHYRLNSKIGVESGAVVYVLDVLREKPMEAVGKIDGSVLGAITSSYGQDVSLDVQARCLGLQAGAHSLFDSSVSNKLGEIINHADMTLWKARKRLKVELKVNENLDPADMNKKISQGKMLDPCDPALSEKMHAMLQGLSRAVWRPLKTVIGEALGASTEHPSAFLRISDKEARQLYEHAERKGMGYADVANLCILLVLSNSF*RSQVLSEAPLNEFGLSPDGTHYRQTFK-RPFKTAGASRGTLPVSHFNLSPGQSMMVHLIAMVGHWFCNANMQDDQRNLFLNSKGQAWAQPDIASRAKKIGAHWLGLPNFCIHTFRTFWATAALNSGQVDPSNKDEFSSFLQVSSATLRTSYMSAAGYGQAHIIGKSVLGGVVNSACLGETTEKGAKPSTKKLGARRMEFIAEIRASLLKHAGKTRLLFRHLVSKREAGQLEEGEKWFMWDRTFFEDGDDRNFKKFVDG 2306
            SSVYTSCSKAL+L+YF VV+LGRPCCLESVILP+SVTERS+LE TWGCPG HLDGPINKFQTNW EVFRAIGTPHRNIN VCLE+ATE+  IGGKHVADCFALYNATRS PGDAK    LVNHYRLNSKIGVESGAVV VLDVLREKPMEAVGKIDGSVLGAITS+YG+ VSLDVQARCLGLQAG HSLFD SVSNKLGEIINHADM LWKARKRL VELKVN++LDPADMNKKIS+GKMLDPCDPA SEKMHAMLQ +SR VW PLKTVIGEALG S +HPSAFLRISD+EA +LYEHA  KGM YAD+ANL  LLVLSNSF RSQVL EA LNEFGL PDGT YRQTFK R FKTAGAS G+ PVSHFNLSPGQSMMVH IA+VGH FCNANM+DD+R L LNSKGQ + Q DI S  KKIGAHWLGLPNFC+HT RTFWATAALNSGQVDPSN ++F SFLQVSS+TLR+SYMSAAG   AH +G  VLG VV SA  GETTE+G  P   KL   RMEFI EIRASLLKH+G  +LLFR LV KR+ GQL EGEKWF  + TF++D  +R F +FV G
Sbjct:  737 SSVYTSCSKALSLMYFTVVILGRPCCLESVILPLSVTERSVLEQTWGCPGTHLDGPINKFQTNWCEVFRAIGTPHRNINYVCLERATEDCYIGGKHVADCFALYNATRSAPGDAKTIKGLVNHYRLNSKIGVESGAVVCVLDVLREKPMEAVGKIDGSVLGAITSTYGKRVSLDVQARCLGLQAGEHSLFDCSVSNKLGEIINHADMKLWKARKRLIVELKVNDSLDPADMNKKISEGKMLDPCDPASSEKMHAMLQSISRQVWLPLKTVIGEALGVSMDHPSAFLRISDEEAHRLYEHASTKGMVYADIANLNTLLVLSNSFQRSQVLREATLNEFGLVPDGTFYRQTFKDRAFKTAGASSGSPPVSHFNLSPGQSMMVHFIAVVGHRFCNANMKDDKRKLLLNSKGQGYVQSDIKSPFKKIGAHWLGLPNFCVHTCRTFWATAALNSGQVDPSNIEDFGSFLQVSSSTLRSSYMSAAGNSAAHTLGHEVLGSVVTSATSGETTEQGDAPQGPKLRRIRMEFIGEIRASLLKHSGNAKLLFRDLVKKRKVGQLGEGEKWFRSENTFWKDDGERVFLRFVGG 1318          
BLAST of mRNA_P-littoralis_Contig875.4.1 vs. uniprot
Match: B2KWI6_ECTSI (EsV-1-213-like protein 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=B2KWI6_ECTSI)

HSP 1 Score: 641 bits (1653), Expect = 7.670e-218
Identity = 337/584 (57.71%), Postives = 416/584 (71.23%), Query Frame = 3
Query:  564 SSVYTSCSKALALLYFAVVVLGRPCCLESVILPISVTERSILE*TWGCPGQHLDGPINKFQTNWREVFRAIGTPHRNINCVCLEKATEEI*IGGKHVADCFALYNATRSDPGDAKATTALVNHYRLNSKIGVESGAVVYVLDVLREKPMEAVGKIDGSVLGAITSSYGQDVSLDVQARCLGLQAGAHSLFDSSVSNKLGEIINHADMTLWKARKRLKVELKVNENLDPADMNKKISQGKMLDPCDPALSEKMHAMLQGLSRAVWRPLKTVIGEALGASTEHPSAFLRISDKEARQLYEHAERKGMGYADVANLCILLVLSNSF*RSQVLSEAPLNEFGLSPDGTHYRQTFK-RPFKTA--GASRGTLPVSHFNLSPGQSMMVHLIAMVGHWFCNANMQDDQRN-LFLNSKGQAWAQPDIASRAKKIGAHWLGLPNFCIHTFRTFWATAALNSGQVDPSNKDEFSSFLQVSSATLRTSYMSAAGYGQAHIIGKSVLGGVVNSACLGETTEKGAKPSTKKLGARRMEFIAEIRASLLKHAGKTRLLFRHLVSKREAGQLEEGEKWFMWDRTFFEDGDDRNFKKFVD 2303
            SSVY+SCS AL+LL+FA  VL RPCCLESVILP+SV ER ++E  + CP +  DGPI  F TNW++VF AIGT HRNI+   LEKA E   I G HVAD +A + AT + PGD  +  ALV  Y+ +SK GVESGAVV ++DV+R+KP+EA+GKIDG VLG I  +YG+    +V+A C  L++G+ +LFD SVSNKL EI+ H D  LWKARK+ KVE  V  NLDPA MNKKI  GKMLDP DP     MHAML+ +SR VW+PLK +IG ALGAS E+P+AFLRIS++E  +LY+H    G+ Y D+ANLC LL+LS SF RSQVL E+ ++EF L   GTHY+ +FK R FKTA  G +    PVSHFNLSP QSM+   IA +GH FC     D     LF+NSKGQ+W Q D++SR K+IG  WLG+ NF  H  R+FW+T AL+SGQV  SN + FSSFLQVSS+TLR SYMSA G   AH +G  VLG VVN+AC GETTEKG +P  KKL ARR+EF  EIRASL +  G  R LFR ++ KR A QL + E WF W+ TFF +GD+R F++F+D
Sbjct:  204 SSVYSSCSMALSLLWFATTVLARPCCLESVILPLSVAERKMMEQRFRCPPECFDGPIKSFHTNWKDVFTAIGTCHRNIDYTLLEKACENKYIEGVHVADVYAAFRATMTAPGDMNSIAALVQSYKEHSKHGVESGAVVGIIDVIRDKPVEAIGKIDGGVLGTIFQTYGERACAEVRAACNKLESGS-TLFDDSVSNKLREIMAHFDCELWKARKKEKVERIVAANLDPAGMNKKIEGGKMLDPTDPKSIALMHAMLKSISRQVWKPLKNMIGTALGASLEYPTAFLRISEEEGEKLYKHLVAAGVVYNDIANLCTLLILSFSFQRSQVLRESTVDEFVLVSGGTHYKFSFKGRRFKTASSGGASSAPPVSHFNLSPDQSMITKFIAFIGHRFCGVLKNDGNGGRLFVNSKGQSWTQKDVSSRFKRIGMQWLGIQNFGPHVCRSFWSTHALSSGQVSASNLENFSSFLQVSSSTLRNSYMSATGNSAAHTVGNQVLGAVVNAACTGETTEKGTRPYGKKLSARRLEFAGEIRASLARFQGNGRRLFREMLQKRNASQLGDTETWFRWENTFFCEGDERLFQRFLD 786          
BLAST of mRNA_P-littoralis_Contig875.4.1 vs. uniprot
Match: D8LP31_ECTSI (EsV-1-213 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LP31_ECTSI)

HSP 1 Score: 623 bits (1607), Expect = 7.400e-211
Identity = 329/605 (54.38%), Postives = 418/605 (69.09%), Query Frame = 3
Query:  504 QIFHEPRVCHDVIGAR-EGKPSSVYTSCSKALALLYFAVVVLGRPCCLESVILPISVTERSILE*TWGCPGQHLDGPINKFQTNWREVFRAIGTPHRNINCVCLEKATEEI*IGGKHVADCFALYNATRSDPGDAKATTALVNHYRLNSKIGVESGAVVYVLDVLREKPMEAVGKIDGSVLGAITSSYGQDVSLDVQARCLGLQAGAHSLFDSSVSNKLGEIINHADMTLWKARKRLKVELKVNENLDPADMNKKISQGKMLDPCDPALSEKMHAMLQGLSRAVWRPLKTVIGEALGASTEHPSAFLRISDKEARQLYEHAERKGMGYADVANLCILLVLSNSF*RSQVLSEAPLNEFGLSPDGTHYRQTFK-RPFKTA--GASRGTLPVSHFNLSPGQSMMVHLIAMVGHWFCNANMQDDQRNLFLNSKGQAWAQPDIASRAKKIGAHWLGLPNFCIHTFRTFWATAALNSGQVDPSNKDEFSSFLQVSSATLRTSYMSAAGYGQAHIIGKSVLGGVVNSACLGETTEKGAKPSTKKLGARRMEFIAEIRASLLKHAGKTRLLFRHLVSKREAGQLEEGEKWFMWDRTFFEDGDDRNFKKFVDG 2306
            Q F   R    + G R E   SSVY SCS A+ L++FA V+LGRP   ESV+LP++V ER +LE  W CP  HLDG I  ++T+WR VFRAI  PHRNI  + LE+A ++  I G HV D + L+ ATRS PGDA+    L   Y   +K G+E G VV  LD++R++P+++VG++DGSVLG+I  +YG+   +   A C   Q G  +LFD+SV  KL EI+ H D  LWK RKRLK+   V+ NLDPA +NKK+  G+MLDP DP   E M+ ML+G+   VW PLK++IGE LGAS EHPSAFL+IS++EA  LYEHA+  G+ Y+DVANLC+LL LSN F RSQV+ EA +NE+ L PDGTH+R TFK R +KTA   AS G LPVSHF +S  QSMM+H +A VGH FC+ +M+D  R LF+NS G+ W   D  SR KKIGA+WLG+ NF  H  RTFWAT ALNSGQV+ SN D+FSS+LQVSSATLR+SY +A+    AH IG  VLGGVVNSAC  E  E G  P   KL   R+EF+A+IRASLLK++G  + +F+ LV KR+ GQL E EKWF  + TF++D  +R F +FV G
Sbjct:  188 QRFFLQRDFATISGKRGETSSSSVYASCSSAIGLMWFATVILGRPTAFESVVLPLNVMERRVLEERWLCPPCHLDGAIRGWETDWRGVFRAINVPHRNIAYIMLERACQDKYIEGFHVGDAYGLFKATRSAPGDAERIATLFRTYTEKTKYGIECGPVVGSLDIIRQRPVDSVGRMDGSVLGSIHLTYGERAGVAAMAACNTPQGGP-TLFDASVGAKLTEIMAHFDSQLWKTRKRLKMANTVSNNLDPAGLNKKVDGGRMLDPTDPKAVEMMYDMLKGVCFGVWHPLKSLIGEKLGASMEHPSAFLKISNQEAELLYEHAKNTGVLYSDVANLCVLLALSNCFQRSQVMREATVNEYALVPDGTHFRHTFKDRTWKTATASASSGALPVSHFEMSADQSMMIHFVACVGHRFCDVDMRDGNRRLFVNSNGEGWTPNDTRSRFKKIGAYWLGIENFSPHVCRTFWATHALNSGQVNSSNIDDFSSYLQVSSATLRSSYAAASANTAAHTIGNVVLGGVVNSACRVEIAENGDGPQGPKLRKIRLEFLADIRASLLKYSGDAKHMFQDLVRKRKVGQLGESEKWFRKENTFWKDEHERVFLRFVGG 791          
BLAST of mRNA_P-littoralis_Contig875.4.1 vs. uniprot
Match: A0A6H5L2T2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2T2_9PHAE)

HSP 1 Score: 607 bits (1566), Expect = 4.590e-205
Identity = 329/584 (56.34%), Postives = 397/584 (67.98%), Query Frame = 3
Query:  564 SSVYTSCSKALALLYFAVVVLGRPCCLESVILPISVTERSILE*TWGCPGQHLDGPINKFQTNWREVFRAIGTPHRNINCVCLEKATEEI*IGGKHVADCFALYNATRSDPGDAKATTALVNHYRLNSKIGVESGAVVYVLDVLREKPMEAVGKIDGSVLGAITSSYGQDVSLDVQARCLGLQAGAHSLFDSSVSNKLGEIINHADMTLWKARKRLKVELKVNENLDPADMNKKISQGKMLDPCDPALSEKMHAMLQGLSRAVWRPLKTVIGEALGASTEHPSAFLRISDKEARQLYEHAERKGMGYADVANLCILLVLSNSF*RSQVLSEAPLNEFGLSPDGTHYRQTFK-RPFKTA--GASRGTLPVSHFNLSPGQSMMVHLIAMVGHWFCNANMQDDQ-RNLFLNSKGQAWAQPDIASRAKKIGAHWLGLPNFCIHTFRTFWATAALNSGQVDPSNKDEFSSFLQVSSATLRTSYMSAAGYGQAHIIGKSVLGGVVNSACLGETTEKGAKPSTKKLGARRMEFIAEIRASLLKHAGKTRLLFRHLVSKREAGQLEEGEKWFMWDRTFFEDGDDRNFKKFVD 2303
            SSVY SCS AL+LL+FA  +L RPCCLES+ILP+SVTER  +E  + CP Q  DGPI  FQTNW++VF AI T HRNIN   LEKA E+  I G H+AD +A++ AT + P D  +  ALV  Y  ++K GVESGAVV V+DV+R+K +EA+GKIDG VLG+I S+YG+   L VQA C  L+ G+ SLFD SVSNKL EI+ H D  LWKARK+ KVE  V  N+DPA MNKKI  GKMLDP DP   + MH MLQ +S                              +E  QL++H    G+ Y DVANLC LL+LS SF RSQVL EA ++EF L PD  HY+ +FK R FKTA  G +    PVSHF LSP QSM+   IA+VGH FC     D++ R LF+N+KGQ+W Q DI+SR K+IG HWLG+ NF  H  RTFW+T ALNSGQ+  SN ++FSSFLQVSS TLR SYM+AA    AH +G  VLG VVNSAC GETTEKGA+P  KKL ARR+EF  EIRASL K++G  RLLFR L+ KR A QL EGEKWF W+ TFF   D+R F++FVD
Sbjct:  207 SSVYASCSMALSLLWFATAILARPCCLESIILPLSVTERRAMEQRFKCPPQFFDGPIQSFQTNWKDVFAAIDTHHRNINYTMLEKACEDKYIEGVHIADVYAVFRATMTAPDDMNSIAALVRSYNQHAKHGVESGAVVGVIDVIRDKSVEAIGKIDGGVLGSIFSAYGERACLKVQAECSRLEGGS-SLFDDSVSNKLAEILAHFDCELWKARKKDKVERVVAANMDPAGMNKKIEGGKMLDPTDPKSIDLMHTMLQTIS----------------------------GQEEGEQLHKHVLTAGVTYTDVANLCTLLLLSFSFQRSQVLREATVDEFVLVPDARHYKFSFKNRRFKTASSGGTSSAPPVSHFMLSPDQSMITRFIAIVGHRFCGTLCLDNEARRLFVNTKGQSWTQKDISSRFKRIGMHWLGISNFGPHVCRTFWSTHALNSGQISGSNLEDFSSFLQVSSTTLRNSYMAAAANTAAHTVGNEVLGAVVNSACTGETTEKGARPYGKKLSARRLEFAGEIRASLAKYSGNGRLLFRALLQKRNASQLAEGEKWFRWENTFFSQSDERLFQRFVD 761          
BLAST of mRNA_P-littoralis_Contig875.4.1 vs. uniprot
Match: A0A6H5K0T8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0T8_9PHAE)

HSP 1 Score: 601 bits (1549), Expect = 1.660e-202
Identity = 326/584 (55.82%), Postives = 395/584 (67.64%), Query Frame = 3
Query:  564 SSVYTSCSKALALLYFAVVVLGRPCCLESVILPISVTERSILE*TWGCPGQHLDGPINKFQTNWREVFRAIGTPHRNINCVCLEKATEEI*IGGKHVADCFALYNATRSDPGDAKATTALVNHYRLNSKIGVESGAVVYVLDVLREKPMEAVGKIDGSVLGAITSSYGQDVSLDVQARCLGLQAGAHSLFDSSVSNKLGEIINHADMTLWKARKRLKVELKVNENLDPADMNKKISQGKMLDPCDPALSEKMHAMLQGLSRAVWRPLKTVIGEALGASTEHPSAFLRISDKEARQLYEHAERKGMGYADVANLCILLVLSNSF*RSQVLSEAPLNEFGLSPDGTHYRQTFK-RPFKTA--GASRGTLPVSHFNLSPGQSMMVHLIAMVGHWFCNANMQDDQ-RNLFLNSKGQAWAQPDIASRAKKIGAHWLGLPNFCIHTFRTFWATAALNSGQVDPSNKDEFSSFLQVSSATLRTSYMSAAGYGQAHIIGKSVLGGVVNSACLGETTEKGAKPSTKKLGARRMEFIAEIRASLLKHAGKTRLLFRHLVSKREAGQLEEGEKWFMWDRTFFEDGDDRNFKKFVD 2303
            SSVY SCS AL+LL+ A  +L RPCCLES+ILP+SVTER  +E  + CP Q  DGPI  FQTNW++VF AI T HRNIN   LEKA E+  I G H+AD +A++ AT + P D  +  ALV  Y  ++K GVESGAVV V+DV+R+K +EA+GKIDG VLG+I S+YG+   L VQ  C  L+ G+ SLFD SVSNK  EI+ H D  LWKARK+ KVE  V  N+DPA MNKKI  GKMLDP DP   + MH MLQ +S                              +E  QL++H    G+ Y DVANLC LL+LS SF RSQVL EA ++EF L PD THY+ +FK R FKTA  G +    PVSHF LSP QSM+   IA+VGH FC     D++ R LF+N+KGQ+W Q DI+SR K+IG HWLG+ NF  H  RTFW+T ALNSGQ+  SN ++FSSF+QVSS TLR SYM+AA    AH +G  VLG VVNSAC GETTEKGA+P  KKL ARR+EF  EIRASL K++G  RLLFR L+ KR A QL EGEKWF W+ TFF   D+R F++FVD
Sbjct:  207 SSVYASCSMALSLLWVATAILARPCCLESIILPLSVTERRAMEQRFKCPPQFFDGPIQSFQTNWKDVFAAIDTHHRNINYTMLEKACEDKYIKGVHIADVYAVFRATMTAPDDMNSIAALVRSYNQHAKHGVESGAVVGVIDVIRDKSVEAIGKIDGGVLGSIFSAYGERACLKVQPECSRLEGGS-SLFDDSVSNKQTEILAHFDCELWKARKKDKVERVVAANMDPAGMNKKIEGGKMLDPTDPKSIDLMHTMLQTIS----------------------------GQEEGEQLHKHVLTVGVTYTDVANLCTLLLLSFSFQRSQVLREATVDEFVLVPDATHYKFSFKNRRFKTASSGGTSSAPPVSHFMLSPDQSMITRFIAIVGHRFCGTLCLDNEARRLFVNTKGQSWTQKDISSRFKRIGMHWLGISNFGPHVCRTFWSTHALNSGQISGSNLEDFSSFIQVSSTTLRNSYMAAAANTAAHTVGNEVLGAVVNSACTGETTEKGARPYGKKLSARRLEFAGEIRASLAKYSGNGRLLFRALLQKRNASQLAEGEKWFRWENTFFSQSDERLFQRFVD 761          
BLAST of mRNA_P-littoralis_Contig875.4.1 vs. uniprot
Match: A0A6H5J9C0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9C0_9PHAE)

HSP 1 Score: 600 bits (1547), Expect = 1.230e-201
Identity = 324/590 (54.92%), Postives = 409/590 (69.32%), Query Frame = 3
Query:  564 SSVYTSCSKALALLYFAVVVLGRPCCLESVILPISVTERSILE*TWGCPGQHLDGPINKFQTNWREVFRAIGTPHRNINCVCLEKATEEI*IGGKHVADCFALYNATRSDPGDAKATTALVNHYRLNSKIGVESGAVVYVLDVLREKPMEAVGKIDGSVLGAITSSYGQDVSLDVQARCLGLQAGAHSLFDSSVSNKLGEIINHADMTLWKARKRLKVELKVNENLDPADMNKKISQGKMLDPCDPALSEKMHAMLQGLSRAVWRPLKTVIGEALGASTEHPSAFLRISDKEARQLYEHAERKGMGYADVANLCILLVLSNSF*RSQVLSEAPLNEFGLSPDGTHYRQTFK-RPFKTAGASRGTL---PVSHFNLSPGQSMMVHLIAMVGHWFC---NANMQDD-QRNLFLNSKGQAWAQPDIASRAKKIGAHWLGLPNFCIHTFRTFWATAALNSGQVDPSNKDEFSSFLQVSSATLRTSYMSAAGYGQAHIIGKSVLGGVVNSACLGETTEKGAKPSTKKLGARRMEFIAEIRASLLKHAGKT--RLLFRHLVSKREAGQLEEGEKWFMWDRTFFEDGDDRNFKKFVD 2303
            SSVY+SCS AL+LL+FA  VL RPCCLES+ILPI+V ER  +E  +GCP    DGPI  FQT W  VF AIGTPHR+I+   +E AT E  + G HV+D +A + AT + PGD  +  ALV  YR ++K GVESGAVV  LDV+R++P  A+GKIDG VLG I S+YG+    +VQA C+ L  GA SLFD SV +KLGEI+ H D  LW+ARK+ KVE  +  N+DPA +NKK+  GKMLDP +P    KM  ML+ LS  VW+PL+++IG+ALGAS E P  FL+IS+ EA+ L +      + YAD+ANLC LL+LS SF RSQVL EA ++EF L PD T ++ +FK R FKTA +S G +   PVSHF L+P QSM+V  IA  GH  C    A   D+ +R LF+N++GQ W Q DI+SR KKIG  WL + NF  H  R+FWA++ALNSGQV+ +N ++FSSFLQVSSATLR SYM+A     AH +G  VLG V N AC GETTE+  +P  KKL A+R EF A+I+A L KH G T  R +FR L+ KR A QL E EKWF W+ TFF +GD+R F++FVD
Sbjct:  213 SSVYSSCSTALSLLWFATTVLARPCCLESIILPINVRERRRMEQRFGCPSHFFDGPIRSFQTTWGGVFAAIGTPHRSIDYTVIEFATSEKYVEGVHVSDAYAAFRATMTAPGDCASIAALVQSYRRSAKHGVESGAVVGALDVIRDRPAGAIGKIDGGVLGTILSTYGETACANVQAECVKLDGGA-SLFDDSVRSKLGEIMTHFDNQLWRARKKDKVERLIVANMDPAGINKKVEGGKMLDPTNPDSVAKMMGMLKSLSGQVWKPLRSLIGKALGASLESPGPFLQISESEAQTLAQFVRAASVTYADIANLCTLLLLSFSFQRSQVLREATVDEFVLVPDATRFKFSFKNRRFKTAASSGGNVAAPPVSHFVLTPDQSMIVKFIATAGHGLCCHGKATKPDNGRRRLFVNARGQGWNQKDISSRFKKIGIEWLSIENFGPHVCRSFWASSALNSGQVNSNNLEDFSSFLQVSSATLRNSYMAATANTAAHTLGNEVLGAVSNMACTGETTERANRPYGKKLCAKRNEFSADIQAYLAKHRGTTTSRKVFRALIRKRAASQLLEDEKWFRWENTFFGEGDERLFQRFVD 801          
BLAST of mRNA_P-littoralis_Contig875.4.1 vs. uniprot
Match: A0A6H5JVT4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVT4_9PHAE)

HSP 1 Score: 603 bits (1555), Expect = 7.860e-195
Identity = 324/605 (53.55%), Postives = 410/605 (67.77%), Query Frame = 3
Query:  504 QIFHEPRVCHDVIGAR-EGKPSSVYTSCSKALALLYFAVVVLGRPCCLESVILPISVTERSILE*TWGCPGQHLDGPINKFQTNWREVFRAIGTPHRNINCVCLEKATEEI*IGGKHVADCFALYNATRSDPGDAKATTALVNHYRLNSKIGVESGAVVYVLDVLREKPMEAVGKIDGSVLGAITSSYGQDVSLDVQARCLGLQAGAHSLFDSSVSNKLGEIINHADMTLWKARKRLKVELKVNENLDPADMNKKISQGKMLDPCDPALSEKMHAMLQGLSRAVWRPLKTVIGEALGASTEHPSAFLRISDKEARQLYEHAERKGMGYADVANLCILLVLSNSF*RSQVLSEAPLNEFGLSPDGTHYRQTFK-RPFKTA--GASRGTLPVSHFNLSPGQSMMVHLIAMVGHWFCNANMQDDQRNLFLNSKGQAWAQPDIASRAKKIGAHWLGLPNFCIHTFRTFWATAALNSGQVDPSNKDEFSSFLQVSSATLRTSYMSAAGYGQAHIIGKSVLGGVVNSACLGETTEKGAKPSTKKLGARRMEFIAEIRASLLKHAGKTRLLFRHLVSKREAGQLEEGEKWFMWDRTFFEDGDDRNFKKFVDG 2306
            Q F   R    + G R E   SSVY SCS A+ L++FA V+LGRP   ESV+LP++V ER +LE  W CP  HLDG I  ++T+WR VFRAI  PHRNI  + LE+A ++  I G HV D + L+ ATRS PGDA+    L   Y   +K G+E G VV  LD++R++P+++VG++DGSVLG+I  +  Q  S                   + VS KL EI+ H D  LWK RKRLK+   V+ NLDPA +NKK+  G+MLDP DP   E M+ ML+G+   VW PLK++IGE LGAS EHPSAFL+IS++EA  LYEHA+ KG+ Y+DVANLC+LL LSN F RSQV+ EA +NEF L PDGTH+R TFK R +KTA   AS G LPVSHF +S  QS+M+H +A VGH FC+ +M+D  R LF+NSKG+ W   D  SR KKIGA+WLG+ NF  H  RTFWAT ALNSGQV+ SN D+FSS+LQVSSATLR+SY +A+    AH IG  VLGGVVNSAC  E  E G  P   KL   R+EF+A+IRASLLK++G  + +F+ LV KR+ GQL E EKWF  + TF++D  +R F +FV G
Sbjct:  188 QRFFLQRDFATISGKRGETSSSSVYASCSSAIGLMWFATVILGRPTAFESVVLPLNVMERRVLEERWLCPPCHLDGAIRGWETDWRGVFRAINVPHRNIAYIMLERACQDKYIEGFHVGDAYGLFKATRSAPGDAERIATLFRAYTEKTKYGIECGPVVGSLDIIRQRPVDSVGRMDGSVLGSIHLTAAQRSS-------------------TLVSAKLTEIMAHFDSQLWKTRKRLKMANTVSTNLDPAGLNKKVDGGRMLDPTDPKAVEMMYDMLKGVCFGVWHPLKSLIGEELGASMEHPSAFLKISNQEAELLYEHAKNKGVLYSDVANLCVLLALSNCFQRSQVMREATMNEFALVPDGTHFRHTFKDRTWKTATASASSGALPVSHFEMSADQSVMIHFVACVGHRFCDVDMRDGNRRLFVNSKGEGWTPNDTRSRFKKIGAYWLGIENFSPHVCRTFWATHALNSGQVNSSNIDDFSSYLQVSSATLRSSYGAASANTAAHTIGNVVLGGVVNSACHVEIAENGDGPQGPKLRKIRLEFLADIRASLLKYSGDAKHMFQDLVRKRKVGQLGESEKWFRKENTFWKDEHERVFLRFVGG 773          
BLAST of mRNA_P-littoralis_Contig875.4.1 vs. uniprot
Match: D7FHJ1_ECTSI (EsV-1-213 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHJ1_ECTSI)

HSP 1 Score: 484 bits (1245), Expect = 3.430e-160
Identity = 253/466 (54.29%), Postives = 324/466 (69.53%), Query Frame = 3
Query:  564 SSVYTSCSKALALLYFAVVVLGRPCCLESVILPISVTERSILE*TWGCPGQHLDGPINKFQTNWREVFRAIGTPHRNINCVCLEKATEEI*IGGKHVADCFALYNATRSDPGDAKATTALVNHYRLNSKIGVESGAVVYVLDVLREKPMEAVGKIDGSVLGAITSSYGQDVSLDVQARCLGLQAGAHSLFDSSVSNKLGEIINHADMTLWKARKRLKVELKVNENLDPADMNKKISQGKMLDPCDPALSEKMHAMLQGLSRAVWRPLKTVIGEALGASTEHPSAFLRISDKEARQLYEHAERKGMGYADVANLCILLVLSNSF*RSQVLSEAPLNEFGLSPDGTHYRQTFKRPFKTAGASRGTL--PVSHFNLSPGQSMMVHLIAMVGHWFCNA-NMQDDQRNLFLNSKGQAWAQPDIASRAKKIGAHWLGLPNFCIHTFRTFWATAALNSGQVDPSNKDEFSSFL 1952
            SSV+ SCS AL+L+ F+ +VLGRPC LES ILP S  ER  LE  + CP    DG + + QTNW++VF +IG  HRNI+C  LEK + E  I G +VAD +A+Y  T S PGDAK+ TALVN YR +SK GV+S A+V ++DVLR KP + +GKIDG VLG I  +YG+  S+ VQ  C     G  +LFD SVS KLGE+I H D  + +ARK+ K+E+ +  N+DPA + KK+  G+MLDPCD    E +H ML GLS  VWRPLK +IGEALGAS E+PSAFLR+S +E   LY+   +  +GY D+ANL ILLVLSNSF RSQ L E+ ++E+ + PDGTH++    R FKTA +S  +   PVSH   +P QSM+V  I+ VGH FC   ++QDD+  LFLNSKGQ W Q DI SR K+IG HWLG+ NF  HT R++W+T ALNSGQV P+N ++FSSFL
Sbjct:   65 SSVFASCSMALSLMCFSTLVLGRPCSLESAILPFSTLERQALEQRFKCPPNFFDGAVREVQTNWKDVFTSIGIAHRNIDCTMLEKFSGERYIEGLYVADAYAVYRGTMSAPGDAKSITALVNAYRDHSKHGVDSSAIVGIIDVLRCKPSDGIGKIDGGVLGTIFYTYGEKDSVRVQEDCNNKLQGGVTLFDYSVSGKLGEVITHFDKEIPRARKKHKMEMIIRGNMDPAGLIKKVESGRMLDPCDANSLELLHGMLMGLSGRVWRPLKQLIGEALGASMEYPSAFLRLSLEEEEVLYKLMVKSRVGYKDIANLYILLVLSNSFQRSQNLRESTVDEYQIVPDGTHFKN---RRFKTASSSGSSSSPPVSHLVFNPHQSMIVKFISRVGHGFCKVQDLQDDKSRLFLNSKGQNWTQKDIGSRFKRIGLHWLGIDNFSPHTCRSYWSTHALNSGQVTPANVEDFSSFL 527          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig875.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
D7FZG9_ECTSI0.000e+077.95EsV-1-213 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
Q8QN77_ESV1K1.940e-31577.95EsV-1-213 n=2 Tax=root TaxID=1 RepID=Q8QN77_ESV1K[more]
A0A6H5JJP2_9PHAE1.490e-31279.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
B2KWI6_ECTSI7.670e-21857.71EsV-1-213-like protein 2 n=1 Tax=Ectocarpus silicu... [more]
D8LP31_ECTSI7.400e-21154.38EsV-1-213 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LP... [more]
A0A6H5L2T2_9PHAE4.590e-20556.34Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K0T8_9PHAE1.660e-20255.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J9C0_9PHAE1.230e-20154.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVT4_9PHAE7.860e-19553.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FHJ1_ECTSI3.430e-16054.29EsV-1-213 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig875contigP-littoralis_Contig875:18565..20885 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2321
Hectar predicted targeting categoryother localisation
Exons1
Cds size630
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791756.5229163-CDS-P-littoralis_Contig875:18564..191941680791756.5229163-CDS-P-littoralis_Contig875:18564..19194Pylaiella littoralis U1_48CDSP-littoralis_Contig875 18565..19194 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791756.5377753-UTR-P-littoralis_Contig875:19194..208851680791756.5377753-UTR-P-littoralis_Contig875:19194..20885Pylaiella littoralis U1_48UTRP-littoralis_Contig875 19195..20885 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig875.4.1prot_P-littoralis_Contig875.4.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig875 18565..19194 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig875.4.1

>prot_P-littoralis_Contig875.4.1 ID=prot_P-littoralis_Contig875.4.1|Name=mRNA_P-littoralis_Contig875.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=210bp
MMVHLIAMVGHWFCNANMQDDQRNLFLNSKGQAWAQPDIASRAKKIGAHW
LGLPNFCIHTFRTFWATAALNSGQVDPSNKDEFSSFLQVSSATLRTSYMS
AAGYGQAHIIGKSVLGGVVNSACLGETTEKGAKPSTKKLGARRMEFIAEI
RASLLKHAGKTRLLFRHLVSKREAGQLEEGEKWFMWDRTFFEDGDDRNFK
KFVDGHVRV*
back to top

mRNA from alignment at P-littoralis_Contig875:18565..20885-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig875.4.1 ID=mRNA_P-littoralis_Contig875.4.1|Name=mRNA_P-littoralis_Contig875.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2321bp|location=Sequence derived from alignment at P-littoralis_Contig875:18565..20885- (Pylaiella littoralis U1_48)
TCGAGTGCAGGGCTCACCACCCTCTTGAGAGCTGGATTCGATCCTCCGGA AGTTGCCACACTCTCACTCACGAAAACGAACTACAAATCACCCGTGACCT TGAAAAATGTGTTCGACCGGCCGACGGAGGGTCAGGTTAAGATTTTCTAC CATGCCCGAAACCACAGCGGGGTACCATACGACCGCCTGTCCGACGCCGA CAAGCTAGCGTGGACGGAGGCACTCCAAGACAATTCTTGCTTGGCGGGAT GTCTCGTCTATTCGCAATTGCTCCCATGTGCCGCGGAGAATCGAACCAAG CTCAAGTCAGGAAGGGCCCACTGGAACGAGTTGAATGTCTCGACAGACAG GGCAAGACTGGAGCAACGGCGGTCCGCGTACGACAGGCTACGGAGGAACG GATCTGCTTTCTCAGCCTTCCACGGACTCCCTTACAGCGTGGATATGACC AAAAACGTGTTGGAGTACATTAATATCGATTTTGAGCAGAGCGACTTGAG GCACAGATTTTTCATGAGCCGCGAGTTTGCCATGACGTCATCGGAGCACG GGAAGGTAAACCCAGTTCGGTGTACACCTCGTGCTCTAAGGCACTAGCTC TTCTCTACTTCGCCGTCGTCGTTCTGGGGCGGCCGTGCTGTCTCGAATCG GTAATACTGCCAATCTCCGTGACTGAACGCTCCATCTTGGAGTAGACGTG GGGTTGCCCGGGGCAGCATCTCGACGGCCCCATCAACAAGTTTCAGACGA ATTGGCGCGAGGTTTTCCGTGCGATCGGCACGCCTCACCGGAACATCAAC TGTGTGTGTCTCGAGAAAGCCACGGAGGAAATTTAAATCGGCGGGAAACA CGTAGCTGATTGCTTTGCTTTGTACAACGCAACTCGGTCGGATCCGGGGG ACGCGAAGGCCACCACGGCGTTGGTCAATCACTACAGGCTAAATTCGAAG ATAGGCGTTGAGTCGGGTGCTGTCGTGTACGTTCTCGATGTGTTGAGGGA GAAGCCCATGGAAGCCGTCGGCAAGATCGACGGCTCTGTGCTGGGGGCGA TCACTTCAAGCTACGGGCAAGACGTGAGCCTCGACGTACAGGCGAGGTGC CTCGGTCTGCAAGCGGGCGCCCACTCTCTATTCGACTCTTCTGTGAGCAA CAAGCTAGGGGAGATCATCAATCACGCTGACATGACGCTCTGGAAGGCCA GGAAACGACTGAAAGTCGAGCTGAAGGTCAACGAAAACCTGGACCCGGCG GACATGAACAAAAAAATCAGCCAAGGCAAAATGCTAGACCCATGTGACCC CGCATTGTCGGAGAAAATGCATGCCATGCTTCAGGGGCTTTCCAGGGCCG TTTGGCGACCGCTCAAGACCGTGATCGGCGAGGCACTGGGGGCAAGCACG GAACACCCATCCGCATTTCTACGGATCTCCGACAAGGAGGCACGTCAGCT GTACGAGCACGCCGAGAGAAAGGGTATGGGCTACGCCGATGTCGCCAATC TCTGCATACTGCTGGTGCTAAGCAATTCTTTCTAACGTTCACAAGTACTG AGCGAGGCACCGCTAAATGAGTTTGGTCTTAGCCCAGACGGCACCCACTA CAGGCAGACTTTCAAGCGTCCGTTCAAGACCGCCGGAGCGTCAAGGGGTA CACTACCCGTGAGTCACTTTAATCTCTCCCCTGGACAGTCCATGATGGTA CATTTAATTGCTATGGTCGGCCATTGGTTCTGCAACGCGAACATGCAGGA CGATCAAAGGAACCTGTTTCTCAATTCGAAGGGGCAGGCTTGGGCCCAGC CTGACATTGCGTCACGCGCCAAAAAGATTGGGGCGCACTGGCTAGGCCTT CCCAACTTCTGTATTCACACGTTTCGAACGTTTTGGGCCACGGCCGCTCT GAATTCGGGCCAGGTCGATCCGTCAAACAAAGATGAATTCAGTAGTTTTT TGCAGGTGTCGAGTGCTACGTTAAGGACTAGCTACATGTCAGCCGCTGGA TACGGTCAGGCCCATATAATCGGCAAGTCGGTGCTAGGTGGCGTAGTCAA CTCGGCTTGCTTGGGAGAAACGACAGAGAAGGGCGCCAAGCCAAGCACCA AGAAACTGGGCGCCCGGAGGATGGAGTTTATTGCGGAAATCCGCGCATCC CTTCTCAAGCACGCAGGCAAAACTAGGTTGCTGTTTCGTCATCTAGTAAG TAAGCGTGAAGCTGGTCAGCTCGAAGAGGGCGAGAAATGGTTCATGTGGG ACAGGACGTTCTTTGAAGACGGCGACGATAGGAACTTTAAGAAGTTCGTA GATGGACACGTGAGAGTGTGA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig875:18565..20885-

>mRNA_P-littoralis_Contig875.4.1 ID=mRNA_P-littoralis_Contig875.4.1|Name=mRNA_P-littoralis_Contig875.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=630bp|location=Sequence derived from alignment at P-littoralis_Contig875:18565..20885- (Pylaiella littoralis U1_48)
ATGATGGTACATTTAATTGCTATGGTCGGCCATTGGTTCTGCAACGCGAA
CATGCAGGACGATCAAAGGAACCTGTTTCTCAATTCGAAGGGGCAGGCTT
GGGCCCAGCCTGACATTGCGTCACGCGCCAAAAAGATTGGGGCGCACTGG
CTAGGCCTTCCCAACTTCTGTATTCACACGTTTCGAACGTTTTGGGCCAC
GGCCGCTCTGAATTCGGGCCAGGTCGATCCGTCAAACAAAGATGAATTCA
GTAGTTTTTTGCAGGTGTCGAGTGCTACGTTAAGGACTAGCTACATGTCA
GCCGCTGGATACGGTCAGGCCCATATAATCGGCAAGTCGGTGCTAGGTGG
CGTAGTCAACTCGGCTTGCTTGGGAGAAACGACAGAGAAGGGCGCCAAGC
CAAGCACCAAGAAACTGGGCGCCCGGAGGATGGAGTTTATTGCGGAAATC
CGCGCATCCCTTCTCAAGCACGCAGGCAAAACTAGGTTGCTGTTTCGTCA
TCTAGTAAGTAAGCGTGAAGCTGGTCAGCTCGAAGAGGGCGAGAAATGGT
TCATGTGGGACAGGACGTTCTTTGAAGACGGCGACGATAGGAACTTTAAG
AAGTTCGTAGATGGACACGTGAGAGTGTGA
back to top