mRNA_P-littoralis_Contig874.27.2 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig874.27.2 vs. uniprot
Match: D7FIC1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIC1_ECTSI) HSP 1 Score: 508 bits (1308), Expect = 8.000e-166 Identity = 328/585 (56.07%), Postives = 376/585 (64.27%), Query Frame = 1
Query: 70 MRRCLYMGAAVAAAPGLLAFHVSPFLADHAAVARRSSRWRAVAPSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAGDASAGNVGDSAANFPSPPPLKSIPQTCLVLRDEATGCDVYLVGCLHGSHASGRDVLDVLHKVRPGAVVLELCESRHEALRKNLKKAAKGGAPLEGKERWASVLRSWGKGVQSTAEKAGLLQGLLAGLLSAPYVVQRLGDFDPGLEFKTAMLYADASTRLQPAAGAAAGAVLPRXXXXXXXEAAVAAPEKAAGEAAGRREGERGRKGLPGEKECAIVLGDRDVQETLRRLGGSLTALTGPRGGGVGEXXXXXXXXXXXXXXXXXXXXDVGERDLKASGESTSTWDWNWGVLASDARVLRIAVLGPIGLEWPDSLNVLDTVWRERQTLGTLLLPLLLGSTLVSEAFQRSIGGAASAVTSGSGGSCGVVGGSMAFGGPGXXN---------VGGAGCVSETASDLGRALAAAGDVFETLFVVGSVWYMLRFFRLVIKERDGVLAENVVKACRNHRGQPVVAVLGLLHCNGVAEVLRNSAGFRGVASA 1797
M+R LY+GAA+ AAP LLAFHV P A A S+RWRAV+ + ASAGN A+ P PP L++IP T LVLRDEATGCD+YLVGCLHGSHASGRDV DVL KVRPGAVVLELCESRH+ALR++L+K AKG APLEGKERWAS SW KGV+ T+ K+GL+QG+L+GLLSAPYVVQRLGDFDPGLEFKTAM+YAD S R + G A G V P AAG AG PGE C++VLGDRDVQETLRRLGG+LTALTG GG + XXXXXXXXXXXXXX V L A+ E+ +T WNWG LASDAR++R+AV+GP G +WPDSLNVLDTVWRERQ LG LLLPLLL +VSE QRSIGG A+A + SG G + FG XX VGG V+ DLGR L DV +TL VV SVWYMLRFFRLVIKERD VLA+NV+KACR+H G+PVVAVLGLLHCNGVA+++R+SAGFRGV A
Sbjct: 1 MKRSLYVGAAIVAAPRLLAFHVPPAPGGLCASASTSNRWRAVSSAGGGGRAGKAGLAALGKGLGCSLRARPGWCTRSFSSRLG-------------------ASAGN---GNASSPPPPSLQNIPHTSLVLRDEATGCDIYLVGCLHGSHASGRDVQDVLEKVRPGAVVLELCESRHKALRRDLEKRAKGDAPLEGKERWASAFSSWAKGVKKTSAKSGLVQGILSGLLSAPYVVQRLGDFDPGLEFKTAMVYADPSVRPGYSTGVARGMVSP-----------------AAGGGAG-----------PGE--CSVVLGDRDVQETLRRLGGALTALTGRGEGGDEKHGVGXXXXXXXXXXXXXXGGGVSVGTLDAA-ETEATSGWNWGTLASDARIVRVAVVGPSGRQWPDSLNVLDTVWRERQALGMLLLPLLLPMMVVSETLQRSIGGVATATVAASGSGGGAL---RGFGAXXXXXXXXXXXXXXVGGG--VAAVDVDLGRLLEGTSDVLDTLLVVLSVWYMLRFFRLVIKERDDVLADNVMKACRDHPGRPVVAVLGLLHCNGVADIIRSSAGFRGVVRA 527
BLAST of mRNA_P-littoralis_Contig874.27.2 vs. uniprot
Match: A0A835YJK9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJK9_9STRA) HSP 1 Score: 123 bits (308), Expect = 5.230e-26 Identity = 154/518 (29.73%), Postives = 204/518 (39.38%), Query Frame = 1
Query: 505 LHGSHASGRDVLDVLHKVRPGAVVLELCESRHEALRKNLKKAAKGGAPLEGK-ERWASVLRSWGKGVQSTAEKAGLLQGLLAGLLSAPYVVQRLGDFDPGLEFKTAMLYADASTRLQPAAGAAAGAVLPRXXXXXXXEAAVAAPEKAAGEAAGRREGERGRKGLPGEKECAIVLGDRDVQETLRRLGGSLTALTGPRGGGVGEXXXXXXXXXXXXXXXXXXXXDVGERDLKASGESTSTWDWNWGVLASDARVLRIAVLGPIGLEWPDSLNVLDTV-WRER--QTLGTLLLPLLLGSTLVSEAFQRSIGGAASAVTSGSGGSCGVVGGSMAFGGPGXXNVGGAGCVSETASDLGRALAAAGDVFETLFVVGSVWYMLRFFRLVIKERDGVLAENV---------------------------------------------VKAC------------------------------------------------RNHRGQPVVAVLGLLHCNGVAEVLRN 1767
+ GS S RDV +V+++ PGAVVLELCESR +AL + L AA+ E + ER +VL W +G++ST +K GLLQ L AGL+S+ Y+ Q+L +FDPG EFKTAM ++A +G+ IVLGDRD+ ETL RL G +G + D ++ G DARVLR+AV G G +WP +LNV + WR + L LL PL G +++ AF+ +GGA +A + SG + S A XX A L L AG+V T+ V S+ MLRFFRLVI ERD LA + V+ C R H G+PVVAVLGLLHCNGVA++LR+
Sbjct: 1 MQGSPTSSRDVENVINESSPGAVVLELCESRFKALSREL--AAEQSVKEETEVERIHAVLGGWVRGLKSTQQKKGLLQALTAGLVSSGYLWQKLNNFDPGCEFKTAMALSNA-------------------------------------------------RGID------IVLGDRDINETLGRLNGK-----NKQGKRAPKLQPNAPPPPPLLKAKKRWSVDRSLAYVRGLGR--------------DARVLRLAVAGESGQQWPAALNVPRCIFWRGDVLKDLFGLLAPLTAGIYVMAGAFEMGVGGAIAAAHAISGDA------SEAXXXXXXXXXXXXXXXXXVAPWL---LEEAGNV--TVVAVASL-VMLRFFRLVIHERDVYLARAIQQWSVAGYKCALAIAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXQVRVCDTCMVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQEAARAHPGEPVVAVLGLLHCNGVAQLLRS 430
BLAST of mRNA_P-littoralis_Contig874.27.2 vs. uniprot
Match: A0A7S4K8X1_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4K8X1_9STRA) HSP 1 Score: 75.5 bits (184), Expect = 2.970e-10 Identity = 141/508 (27.76%), Postives = 194/508 (38.19%), Query Frame = 1
Query: 376 ASAGNVGDSAANFPSPPPLKSIPQTCLVLRDEATGCDVYLVGCLHGSHASGRDVLDVLHKV-RPGAVVLELCESRHEALRKNLKKAAKGGAPL---------EGKERWASVLRSWGKG-------VQSTAEKAGLLQGLLAGLLSAPYVVQR-LGDFDPGLEFKTAMLYADASTRLQPAAGAAAGAVLPRXXXXXXXEAAVAAPEKAAGEAAGRREGERGRKGLPGEKECAIVLGDRDVQETLRRLGGSLTALTGPRGGGVGEXXXXXXXXXXXXXXXXXXXXDVGE-RDLKASG-ESTSTWDWNWGVLASDARVLRIAVLGPIGLEWPDSLNVLDTVWRERQTLGTLLLPLLLGSTLVSEAFQRSIGGAASAVTSGSGGSCGVVGGSMAFGGPGXXNVGGAGCV----SETASDL-----GRALAAAGDVFETLFVVGSVWYMLRFFRLVIKERDGVLAENVVKACR-----------------NHRGQPVVAVLGLLHCNGVAEVL 1761
A+A + G AA L+ L + D AT V LVGCLHGS +S DV + VVLELC +R +R ++ + A L +G E +R W G V+ TAEK G+ + A L Q L F+PG EF+ AM E V E +G AG E + G + I+L D+ V ETLRR+G +L A++G G+ D+KA G ES + WG D ++LRI GP P +++ + R + T L L L L++E + A A+ M GG GA V S T +D+ G + AA V + V+G + L +++I ERD LA+ V +ACR G VVAVLGLLH NGVA+ L
Sbjct: 111 AAASDRGHEAA-------LRGSDDPALEIIDPATNVTVVLVGCLHGSLSSSSDVQRAIEDAPSTDVVVLELCAARFADVRNEVRSRSSSSALLGGEEMSDYLDGSESGFGGMRGWAAGLPLFLGAVRRTAEKRGMAAAVAALALGTVSGTQAALSGFEPGREFRVAM------------------------------ECVV---EGRSGCIAGNGE-------MAGGETVDIILADKTVDETLRRVG-NLPAVSG---------------------GMMRAFLSSGDWNDIKAYGTESKALSTAIWG----DPKLLRIQ--GP-----PRQVDMGRCLIRN-SAVQTDLARLTLPPLLLAEGIASAANKALEAL--------------MGQGGVSNDANIGAAFVDLSSSLTLTDMMSISSGIVIDAATSV--AVLVLGFILLALPTVKIIISERDESLAKGVRQACRLAVAKRGIKDKGELGQSTDEGGRVVAVLGLLHVNGVAQQL 521
BLAST of mRNA_P-littoralis_Contig874.27.2 vs. uniprot
Match: A0A7S0ZFW7_9RHOD (Hypothetical protein n=2 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZFW7_9RHOD) HSP 1 Score: 63.5 bits (153), Expect = 1.040e-6 Identity = 45/138 (32.61%), Postives = 69/138 (50.00%), Query Frame = 1
Query: 439 IPQTCLVLRDEATGCDVYLVGCLHGSHASGRDVLDVLHKVRPGA---VVLELCESRHEALR----KNLKKAAKGGAPLEGKERWASVLRSWGKGVQSTAEKAGLLQGLLAGLLSAPYVVQRLGDFDPGLEFKTAMLYA 831
+P T + L D +GCD+ ++GC+HGS S DV V + + VVLELC+ R + LR + KK PL +R++G G+ G+LA +LS+ Y + +PG+EF+ A+ YA
Sbjct: 55 LPSTVVHLHDSKSGCDILVIGCVHGSFQSAADVEKVFELTQHASHTSVVLELCDQRLKTLRAPVVSDSKKNRNHKLPLN------KYIRNFG----------GIGPGILAFILSSFYRIHTAIGLEPGIEFRAAVEYA 176
BLAST of mRNA_P-littoralis_Contig874.27.2 vs. uniprot
Match: D6WMS0_TRICA (TraB domain-containing protein-like Protein n=2 Tax=Tribolium TaxID=7069 RepID=D6WMS0_TRICA) HSP 1 Score: 62.8 bits (151), Expect = 1.790e-6 Identity = 48/151 (31.79%), Postives = 77/151 (50.99%), Query Frame = 1
Query: 373 DASAGNVGDSAANFPSPPPLKSIPQTCLVLRDEATGCDVYLVGCLHGSHASGRDVLDVLHKVRPGAVVLELCESRHEALRKNLKKAAKGGAPLEGKERWASVLRSWGKGVQSTAEKAGLLQGLLAGLL--SAPYVVQRLGDFDPGLEFKTA 819
D S+ N G S +F + ++P+T +L+ EATG VYLVG H S+ S DV+ V+ + P AVVLELC SR L + K + ++ ++ + + + +GL G++ LL + ++ + LG PG EF+ A
Sbjct: 40 DQSSSNGGKSDEDFDN-----NLPETVTLLKHEATGAKVYLVGTAHFSNESKEDVIKVIRNILPHAVVLELCASRTNILSLDEKTILEEAKNIDLQK------------IVNNIKSSGLYNGIMYILLLNMSAHITKELG-MAPGGEFRVA 172
BLAST of mRNA_P-littoralis_Contig874.27.2 vs. uniprot
Match: A0A7S3ED37_9RHOD (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3ED37_9RHOD) HSP 1 Score: 62.4 bits (150), Expect = 2.140e-6 Identity = 49/146 (33.56%), Postives = 70/146 (47.95%), Query Frame = 1
Query: 385 GNVGDSAANFPSPPPLKSIPQ--TCLVLRDEATGCDVYLVGCLHGSHASGRDVLDVLHKVRPG--AVVLELCESRHEALRKNLKKAAKGGAPLEGKERWASVLRSWGKGVQSTAEKAGLLQGLLAGLLSAPYVVQRLGDFDPGLEF 810
G+V SA PPP + + + V+RDE +G DVY+VGC+HG +S RD+ V V AV++ELCE R + K K P E + + Q+ A G L+ +L +Q+L F+PGLEF
Sbjct: 23 GSVRRSAVRV-DPPPGDKVRKLGSVSVVRDEKSGVDVYVVGCIHGFRSSVRDIETVAGSVTSPLRAVMIELCEDRWRVISKLTKDKRSKKLPEENFNLFTLL--------QTPARLGGSGPALVGAVLVGISSIQKLSGFEPGLEF 159
BLAST of mRNA_P-littoralis_Contig874.27.2 vs. uniprot
Match: A0A090M7F3_OSTTA (Pheromone shutdown, TraB n=1 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A090M7F3_OSTTA) HSP 1 Score: 61.2 bits (147), Expect = 3.260e-6 Identity = 41/132 (31.06%), Postives = 62/132 (46.97%), Query Frame = 1
Query: 448 TCLVLRDEATGCDVYLVGCLHGSHASGRDVLDVLHKVRPGAVVLELCESRHEALRKNLKKAAKGGAPLEG--KERWASVLRSWGKGVQSTAEKAGLLQGLLAGLLSAPYVVQRLGDFDPGLEFKTAMLYADA 837
T VLR ++YLVG H S S ++V +++ +VRP V +ELC+ R +R+ + K +G EG E +R + + GLL + Y RL +PG EFK A+ A+A
Sbjct: 34 TVSVLRSSTCEREIYLVGTAHVSEKSAQEVAELVRRVRPTVVAVELCDERLATMRETIAKERRGEKKGEGGTSEFVRRAVRDFFGAFTGARGPGNVADGLLGAAMKTFYGFFRLSGLEPGKEFKEAVKEAEA 165
BLAST of mRNA_P-littoralis_Contig874.27.2 vs. uniprot
Match: A0A482VZR3_9CUCU (TraB domain-containing protein n=1 Tax=Asbolus verrucosus TaxID=1661398 RepID=A0A482VZR3_9CUCU) HSP 1 Score: 61.2 bits (147), Expect = 5.640e-6 Identity = 35/82 (42.68%), Postives = 47/82 (57.32%), Query Frame = 1
Query: 364 GAGDASAGNVGDSAANFPSPPPLKSIPQTCLVLRDEATGCDVYLVGCLHGSHASGRDVLDVLHKVRPGAVVLELCESRHEAL 609
G D S+ N G S +F + ++P+T +L+ EATG VYLVG H S+ S DV+ V+ + P VVLELC SR L
Sbjct: 37 GETDQSSSNGGKSDEDFDN-----NLPETVTLLKHEATGAKVYLVGTAHFSNESKEDVIKVIQNILPHVVVLELCSSRTNIL 113
BLAST of mRNA_P-littoralis_Contig874.27.2 vs. uniprot
Match: A0A7S0BC06_9RHOD (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BC06_9RHOD) HSP 1 Score: 60.1 bits (144), Expect = 1.180e-5 Identity = 46/121 (38.02%), Postives = 65/121 (53.72%), Query Frame = 1
Query: 457 VLRDEATGCDVYLVGCLHGSHASGRDVLDVLHKVRPG--AVVLELCESRHEALRKNLKKAAKGGAPLEGKE-RWASVLRSWGKGVQSTAEKAGLLQGLLAGLLSAPYVVQRLGDFDPGLEF 810
V+RDE +G DVY+VGC+HG +S RDV V V AV++ELCE R + K K K + L+ K S++R+ G+ G L+A +L +Q+L F+PGLEF
Sbjct: 48 VVRDEKSGVDVYVVGCVHGFRSSVRDVETVAACVTSPLRAVMIELCEDRWRVISKLTKD--KSSSKLQQKSFNLFSLVRALGR-------FGGSGPALVAAVLVGISNIQKLSGFEPGLEF 159
BLAST of mRNA_P-littoralis_Contig874.27.2 vs. uniprot
Match: A0A7S0WU28_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0WU28_9CHLO) HSP 1 Score: 59.7 bits (143), Expect = 1.780e-5 Identity = 32/71 (45.07%), Postives = 44/71 (61.97%), Query Frame = 1
Query: 1552 GRALAAAGD-VFETLFVVGSVW----YMLRFFRLVIKERDGVLAENVVKACRNHRGQPVVAVLGLLHCNGV 1749
G ++A G VF T F G + LR +V+ RD VLA ++++ C+ H+GQ VVAVLG+LHCNGV
Sbjct: 308 GDSVATGGTGVFVTAFNAGLCMVIPLFWLRIGDIVLSSRDEVLAASIMQTCQRHKGQTVVAVLGMLHCNGV 378 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig874.27.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig874.27.2 >prot_P-littoralis_Contig874.27.2 ID=prot_P-littoralis_Contig874.27.2|Name=mRNA_P-littoralis_Contig874.27.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=582bp MRRCLYMGAAVAAAPGLLAFHVSPFLADHAAVARRSSRWRAVAPSAAAPAback to top mRNA from alignment at P-littoralis_Contig874:60964..71585+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig874.27.2 ID=mRNA_P-littoralis_Contig874.27.2|Name=mRNA_P-littoralis_Contig874.27.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=10622bp|location=Sequence derived from alignment at P-littoralis_Contig874:60964..71585+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig874:60964..71585+ >mRNA_P-littoralis_Contig874.27.2 ID=mRNA_P-littoralis_Contig874.27.2|Name=mRNA_P-littoralis_Contig874.27.2|organism=Pylaiella littoralis U1_48|type=CDS|length=1746bp|location=Sequence derived from alignment at P-littoralis_Contig874:60964..71585+ (Pylaiella littoralis U1_48)back to top |