mRNA_P-littoralis_Contig87.4.1 (mRNA) Pylaiella littoralis U1_48
|
Overview
Homology
BLAST of mRNA_P-littoralis_Contig87.4.1 vs. uniprot
Match: D7G914_ECTSI (ER membrane protein complex subunit 10 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G914_ECTSI) HSP 1 Score: 311 bits (797), Expect = 1.770e-104 Identity = 168/232 (72.41%), Postives = 189/232 (81.47%), Query Frame = 1
Query: 64 MKSLFSVVVAVSACCVAASTRYVSVEHAFGPNAEFTQRGSLEISIDPSRAVGPSATLQPVKLPDASQMEDLIANDGLYLIRVATDESSGRHVVAAVPACQLRLSSFREEITLHVEWDGLIVGLDYKSPVGPLASTRDCTKMQVSGSSEVTSKITVVRSASAQSVPLQVLANSPPPGLQNLKEQIGTKDSTMAGNQSLLVKYWYIFLPCLLFYMFNTGGPEQGTQAAPAASGG 759
MKSL + A CV AS R +SVEHAFGP AE+T RG LE+ IDPSRA SA+LQP L DASQME+LIANDGLYLIRVATDESS +HVVAAV ACQLRL+SFREEITLHVE DG+IVG+DYKS VGPLASTR+CTKM V+ SEV +K+ VVR+ASAQSVPLQVL NSPPPGL LKEQIGTKD+ AGNQSLLVKYWYIFLPC+L +MF+ P+QG A P A+GG
Sbjct: 1 MKSLKTATSVAFAWCVQASARSLSVEHAFGPAAEWTHRGFLELDIDPSRAKAFSASLQPATLRDASQMEELIANDGLYLIRVATDESSNQHVVAAVSACQLRLASFREEITLHVERDGVIVGVDYKSLVGPLASTRNCTKMPVAEYSEVVTKVVVVRAASAQSVPLQVLQNSPPPGLSALKEQIGTKDAKAAGNQSLLVKYWYIFLPCVLLFMFSA--PDQGGAATPPAAGG 230
BLAST of mRNA_P-littoralis_Contig87.4.1 vs. uniprot
Match: A0A7S2SU16_9STRA (ER membrane protein complex subunit 10 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SU16_9STRA) HSP 1 Score: 92.4 bits (228), Expect = 1.280e-18 Identity = 65/215 (30.23%), Postives = 113/215 (52.56%), Query Frame = 1
Query: 136 VEHAFGPNAE-FTQRGSLEISIDPSRAVGPSATLQPVKLPDASQMEDLIANDGLYLIRVATD--ESSGRHVVAAVPACQLRLSSFREEITLHVEWDGLIVGLDYKSPVGPLASTRDCTKMQV-SGSSEVTSKITVVRSASAQSVPLQVLANSP-PPGLQNLK--EQIGTKDSTMAGNQSLLVKYWYIFLPCLLFYMFNTGGPE----QGTQAAPA 747
+EH+ P+++ F+ RGS+E ++ R V S L + + +Q L G Y IR + +S +V+AA+ AC L ++ F+EE+ L ++ +G ++ +DY++P A+ RDCT+ ++ + +S + V S AQ +PLQ + PPG+Q ++ + K QS + + WYI LP +LF + + P QG + A A
Sbjct: 53 LEHSLSPDSDAFSPRGSMEFALGARRTVQFSEGLA-LTSEETTQFRALATQGGFYRIRTRSSPFNASSPYVMAAIRACDLAVTGFKEEMKLFLDPEGNLISMDYRTPASFFAAKRDCTRPEIYPAEAAFSSAGSFVGSTPAQQIPLQPDGPAKLPPGMQGVQGMNNLDPKKQDPRQQQSFIRRNWYIILPIVLFLLTSGAEPPPAGGQGQEGAGA 266
BLAST of mRNA_P-littoralis_Contig87.4.1 vs. uniprot
Match: A0A7S2V3X6_9STRA (ER membrane protein complex subunit 10 (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V3X6_9STRA) HSP 1 Score: 87.0 bits (214), Expect = 4.450e-17 Identity = 72/215 (33.49%), Postives = 100/215 (46.51%), Query Frame = 1
Query: 208 RAVGPSATLQPVK-LPD--ASQMEDLIANDGLYLIRVATDESSGRHVVAAVPACQLRLSSFREEITLHVEWDGLI--------------------VGLDYKSPVGPLASTRD-------CTKMQVSGSSEVTSKITVVRSASAQSVPLQVLANSPPPGLQNLKEQIGTKDSTMAG--NQSLLVKYWYIFLPCLLFYMFNTGGPEQGTQAAPAASG 756
R VGPSA LPD Q+E+L+ N G Y +R+ + V A+V ACQL +SFREEITL ++ + +GL Y + PLA+ C+ ++ S E T+ + AQS+P+QV A SPPPG+ L + + G NQS L KYWYI +P +L ++ N PE AP G
Sbjct: 5 RFVGPSANAAGTHTLPDHQIEQLEELVRNGGYYRLRLRMGPDAP-WVGASVSACQLHRASFREEITLQLDLVSPVAGGAXXXXXXXXXXXXXVEVLGLRYAAVPPPLATMLTTGAGALACSAAKLPSSVEFTTTLQSSLPTQAQSIPVQVTAGSPPPGVARLAKFQAQGEDGKGGQQNQSFLRKYWYIVVPLVLLFLMNPQQPE----GAPGGGG 214
BLAST of mRNA_P-littoralis_Contig87.4.1 vs. uniprot
Match: A0A8J1YC89_OWEFU (ER membrane protein complex subunit 10 n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1YC89_OWEFU) HSP 1 Score: 64.3 bits (155), Expect = 1.080e-8 Identity = 55/200 (27.50%), Postives = 97/200 (48.50%), Query Frame = 1
Query: 136 VEHAFGPNAEFTQRGSLEISIDPSRAVGPSATLQPVKLPDASQMEDLIANDGLYLIR--VATDESSGRHVVAAVPACQLRLSSFREEITLHVEWDGLIVGLDYKSPVGPLASTRDCTKMQVSGSSEVTSKITV-VRSASAQSVPLQVLANSPPPGLQNLKEQIGTKDST-MAGNQSLLVKYWYIFLPCLLFYMFNTGGPE 723
VEHAFG +AEFT+RG++ I + V L P+ + ++++ L+ +DG Y IR V T S+ ++V + + AC + S ++I + V G IVG+ + + C + V SS TV +R++ A +P +Q ++++ K+ A N+S + KYW +P +F M + +
Sbjct: 36 VEHAFGSDAEFTERGTITIQSMKAN-VATFNQLAPLTKDEKAKLKALVKSDGNYRIRIPVKTSNSNVQYVSSFMKACSMYESKLSDQIIISVGSSGGIVGISMVTYLS------HCAGITVPESSLKNFNTTVDIRTSLAGPMP------DTQSYIQKMEQEKAAKEKEGPADNRSFIAKYWMYIVPVFIFMMVASNAEQ 222
BLAST of mRNA_P-littoralis_Contig87.4.1 vs. uniprot
Match: A0A6P8SKT0_GEOSA (ER membrane protein complex subunit 10 n=2 Tax=Geotrypetes seraphini TaxID=260995 RepID=A0A6P8SKT0_GEOSA) HSP 1 Score: 64.3 bits (155), Expect = 1.380e-8 Identity = 55/209 (26.32%), Postives = 97/209 (46.41%), Query Frame = 1
Query: 130 VSVEHAF--GPNAEFTQRGSLEISIDPSRAVGPSATLQPVKLPDASQMEDLIANDGLYLIRV----ATDESSGRHVVAAVPACQLRLSSFREEITLHVEWDGLIVGLDYKSPVGPLASTRDCTKMQVSGSS-EVTSKITVVRSASAQSVPLQVLANSPPPGLQNLKEQIGTKDSTMAGNQSLLVKYWYIFLPCLLFYMFNTGGPEQGTQ 735
V +EH+F + FT+RGSL +P+ + + + + + ++ D+ + +G+Y IR+ DE S +HV + VPAC + S ++IT+H + G I+G+ + G CT +V E+ + V+ A +VP ++ L+ + K +S KYW +P +LF M + G P+ G Q
Sbjct: 43 VQLEHSFELDSSIRFTKRGSL--LWNPASEGSVTISQKQLTEEERIKLRDIASLNGVYRIRIPRKPGLDEGSVQHVTSFVPACSMVESHLSDQITIHTDLAGNIIGVSIVTVPG------SCTGAEVEDVDLELFNTTVQVQQPVAAAVPETAAF------IERLEMEQAQKAKNPQEQKSFFAKYWMYIIPIVLFLMMS-GAPDTGNQ 236
BLAST of mRNA_P-littoralis_Contig87.4.1 vs. uniprot
Match: A0A6P7XTU1_9AMPH (ER membrane protein complex subunit 10 n=2 Tax=Microcaecilia unicolor TaxID=1415580 RepID=A0A6P7XTU1_9AMPH) HSP 1 Score: 62.8 bits (151), Expect = 5.190e-8 Identity = 59/213 (27.70%), Postives = 100/213 (46.95%), Query Frame = 1
Query: 130 VSVEHAF--GPNAEFTQRGSLEISIDPSRAVGPSATLQPVKLPDASQME--DLIANDGLYLIRV----ATDESSGRHVVAAVPACQLRLSSFREEITLHVEWDGLIVGLDYKSPVGPLASTRDCTKMQVSGSS-EVTSKITVVRSASAQSVPLQVLANSPPPGLQNLKEQIGTKDSTMAGNQSLLVKYWYIFLPCLLFYMFNTGGPEQGTQAA 741
V +EH+F + FT+RGS+ + S SATL +L + +M+ D+ + +G+Y IR+ DE S R+ + VPAC + S ++IT+H + G I+G+ + G CT +++ E+ + V+ A +VP ++ L+ + K +S KYW +P +LF M + G P+ G Q A
Sbjct: 53 VQLEHSFELDNSIRFTKRGSV-LWTPVSEG---SATLLQKQLTEEERMKLRDVASLNGVYRIRLLRKPGLDEGSARYTTSFVPACSMVESHLSDQITVHTDLAGNIIGVSIVTVPG------SCTGVEMEDVDLELFNTTVQVQQPVAAAVPETAAF------IERLEMEQAQKAKNPQEQKSFFAKYWMYIIPIVLFLMMS-GAPDTGNQGA 248
BLAST of mRNA_P-littoralis_Contig87.4.1 vs. uniprot
Match: A0A7S2SGJ4_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2SGJ4_9STRA) HSP 1 Score: 61.2 bits (147), Expect = 2.160e-7 Identity = 52/160 (32.50%), Postives = 81/160 (50.62%), Query Frame = 1
Query: 295 YLIRVATDESSGRHVVAAVPACQLRLSSFREEITLHVEWDGLIVGLDYKSPVGPLASTRDCTKMQVSGSSEVTSKITVVRSASAQS---VPLQVLANSPPPGLQ--------NLKEQIGTKDSTMAGNQSLLVKYWYIFLPCLLFYMF-NTGGPEQGTQA 738
Y I+V E+ + +A+VPAC +R S+ REE+TL + G ++ + + PLA C +Q + S+ S TV+ ++AQ+ +PL + + PPPG N I +++ QS L KYWYI LP +L + N+ E TQA
Sbjct: 88 YQIKVVDPETQ-QSALASVPACHMRRSNLREEMTLTLGQSGSLLSVSLTPLISPLALP--CEAIQAA--SDKISFQTVISLSTAQTGMTIPLVLPSVRPPPGYSWFPRTTTGNTNPAIQEQEA-QGQQQSFLRKYWYIILPIMLTTVLGNSAEEEPATQA 241
BLAST of mRNA_P-littoralis_Contig87.4.1 vs. uniprot
Match: A0A3L7HGV5_CRIGR (ER membrane protein complex subunit 10 (Fragment) n=1 Tax=Cricetulus griseus TaxID=10029 RepID=A0A3L7HGV5_CRIGR) HSP 1 Score: 60.8 bits (146), Expect = 2.260e-7 Identity = 58/211 (27.49%), Postives = 95/211 (45.02%), Query Frame = 1
Query: 136 VEHAF--GPNAEFTQRGSLEISIDPSRAVGPSATLQPVKLPDASQMEDLIANDGLYLIRVAT------DESSGRHVVAAVPACQLRLSSFREEITLHVEWDGLIVGLDYKS-PVGPLASTRDCTKMQVSGSSEVTSKITVVRSASAQSVPLQVLANSPPPGLQNLKEQIGTKDSTMAGN----QSLLVKYWYIFLPCLLFYMFNTGGPEQG 729
+EH+F G A F +RGSL + SAT + + + ++ D+ A +GLY +RV +G +V + VPAC L S +++TLHV+ G +VGL + P G S + +++ +S V L+ +P P E++ + + A N +S KYW +P +LF M + G P+ G
Sbjct: 47 LEHSFEIGDRANFQKRGSLLWNQQEGTL---SATQRQLSEEERGRLRDVAAVNGLYRVRVPRRPGVLDGSEAGGYVSSFVPACSLVESHLSDQLTLHVDVAGNVVGLSVVAYPGGCRGSEVEDEDLELFNTS----------------VQLRPPGTAPGPETAAFIERLEMEQAQKAKNPQEQKSFFAKYWMYIIPVVLFLMMS-GAPDAG 237
BLAST of mRNA_P-littoralis_Contig87.4.1 vs. uniprot
Match: A0A6P3R1E3_PTEVA (ER membrane protein complex subunit 10 n=8 Tax=Pteropodinae TaxID=77225 RepID=A0A6P3R1E3_PTEVA) HSP 1 Score: 60.8 bits (146), Expect = 2.560e-7 Identity = 60/212 (28.30%), Postives = 93/212 (43.87%), Query Frame = 1
Query: 136 VEHAF--GPNAEFTQRGSLEISIDPSRAVGPSATLQPVKLPDASQMEDLIANDGLYLIRVAT------DESSGRHVVAAVPACQLRLSSFREEITLHVEWDGLIVGLDYKSPVGPLASTRDCTKMQVSGSSEVTSKITVVRSASAQSVPLQVLANSPPPGLQNLKEQIGTKDSTMAGN----QSLLVKYWYIFLPCLLFYMFNTGGPEQGTQ 735
+EH+F NA F +RGSL + S S + + + + ++ D+ A +GLY +RV D +G V + +PAC L S +++TLHV+ G +VGL + G C +V V SV LQ +P P E++ + + A N +S KYW +P +LF M + G P+ G Q
Sbjct: 56 LEHSFEIDDNAHFRKRGSLLWNQQDSTL---SLSQRQLSEEERGRLRDVAALNGLYRVRVPRRPGVPDDPEAGSFVSSFIPACSLVESHLSDQLTLHVDVAGNVVGLSVVTHPG------GCRGHEVED---------VDLELFNTSVRLQPPVTAPGPETAAFIERLEMEQAQKAKNPQEQKSFFAKYWMYIVPVVLFLMMS-GAPDAGGQ 248
BLAST of mRNA_P-littoralis_Contig87.4.1 vs. uniprot
Match: UPI001128ED8F (ER membrane protein complex subunit 10 isoform X1 n=2 Tax=Rhinatrema bivittatum TaxID=194408 RepID=UPI001128ED8F) HSP 1 Score: 60.1 bits (144), Expect = 4.270e-7 Identity = 57/211 (27.01%), Postives = 98/211 (46.45%), Query Frame = 1
Query: 130 VSVEHAF--GPNAEFTQRGSLEISIDPSRAVGPSATLQPVKLPDA--SQMEDLIANDGLYLIRV----ATDESSGRHVVAAVPACQLRLSSFREEITLHVEWDGLIVGLDYKSPVGPLASTRDCTKMQVSGSS-EVTSKITVVRSASAQSVPLQVLANSPPPGLQNLKEQIGTKDSTMAGNQSLLVKYWYIFLPCLLFYMFNTGGPEQGTQ 735
V +EH+F + +T+RGSL S P A S TL +L + +++ D+ + +G+Y +R+ TD S +V + VPAC + S ++IT+H + G I+G+ + G C+ +V E+ + V+ A +VP ++ L+ + K +S KYW +P +LF M + G P+ G Q
Sbjct: 46 VHLEHSFELDDSIHYTKRGSLLWST-PLEA---SITLSQKQLTEEERNKLRDIASLNGIYRLRIPRKLGTDGDSAEYVTSFVPACSMVESHLSDQITVHTDIAGNIIGVSIVTVPG------SCSGAEVEDVDLELFNTTVQVQQPVAAAVPETAAF------IERLEMEQAQKAKNPQEQKSFFAKYWMYIIPIVLFLMMS-GAPDAGNQ 239 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig87.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig87.4.1 >prot_P-littoralis_Contig87.4.1 ID=prot_P-littoralis_Contig87.4.1|Name=mRNA_P-littoralis_Contig87.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=255bp ERPGQRCSAPLLCVLLQKLELMKSLFSVVVAVSACCVAASTRYVSVEHAFback to top mRNA from alignment at P-littoralis_Contig87:27544..31256+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig87.4.1 ID=mRNA_P-littoralis_Contig87.4.1|Name=mRNA_P-littoralis_Contig87.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3713bp|location=Sequence derived from alignment at P-littoralis_Contig87:27544..31256+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig87:27544..31256+ >mRNA_P-littoralis_Contig87.4.1 ID=mRNA_P-littoralis_Contig87.4.1|Name=mRNA_P-littoralis_Contig87.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=765bp|location=Sequence derived from alignment at P-littoralis_Contig87:27544..31256+ (Pylaiella littoralis U1_48)back to top |