mRNA_P-littoralis_Contig87.196.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig87.196.1
Unique NamemRNA_P-littoralis_Contig87.196.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig87.196.1 vs. uniprot
Match: D7G920_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G920_ECTSI)

HSP 1 Score: 131 bits (330), Expect = 5.280e-32
Identity = 69/89 (77.53%), Postives = 77/89 (86.52%), Query Frame = 2 
Query:  242 MATPAPAKGGEVASKARRPLPITAGEKIVEGERLRDEAHSLIE-DRPKKAAVKFRTVFAFTKGLIPHTSELAVYAAATGQQTVIDQQQQ 505
            M+TP PA GG  AS ARRPLP T G+KIVEGERLRDEA SL++ D+PK AAVKFRTVFA+TKGLIP TSELA+YAA TGQQTVIDQ+QQ
Sbjct:   47 MSTPVPATGGAAASNARRPLPTTPGDKIVEGERLRDEAQSLLKSDKPKTAAVKFRTVFAYTKGLIPQTSELALYAAVTGQQTVIDQKQQ 135
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig87.196.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G920_ECTSI5.280e-3277.53Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig87contigP-littoralis_Contig87:414282..419279 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1257
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionFKBP and TPR domain protein
Ec32 orthologEc-15_002210.1
Cds size684
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig87.196.1prot_P-littoralis_Contig87.196.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig87 414614..419038 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791742.688226-UTR-P-littoralis_Contig87:414281..4146131680791742.688226-UTR-P-littoralis_Contig87:414281..414613Pylaiella littoralis U1_48UTRP-littoralis_Contig87 414282..414613 -
1680791742.76463-UTR-P-littoralis_Contig87:419038..4192791680791742.76463-UTR-P-littoralis_Contig87:419038..419279Pylaiella littoralis U1_48UTRP-littoralis_Contig87 419039..419279 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791742.7089672-CDS-P-littoralis_Contig87:414613..4149451680791742.7089672-CDS-P-littoralis_Contig87:414613..414945Pylaiella littoralis U1_48CDSP-littoralis_Contig87 414614..414945 -
1680791742.7221203-CDS-P-littoralis_Contig87:415763..4158501680791742.7221203-CDS-P-littoralis_Contig87:415763..415850Pylaiella littoralis U1_48CDSP-littoralis_Contig87 415764..415850 -
1680791742.7322674-CDS-P-littoralis_Contig87:418215..4184061680791742.7322674-CDS-P-littoralis_Contig87:418215..418406Pylaiella littoralis U1_48CDSP-littoralis_Contig87 418216..418406 -
1680791742.7506118-CDS-P-littoralis_Contig87:418964..4190381680791742.7506118-CDS-P-littoralis_Contig87:418964..419038Pylaiella littoralis U1_48CDSP-littoralis_Contig87 418965..419038 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig87.196.1

>prot_P-littoralis_Contig87.196.1 ID=prot_P-littoralis_Contig87.196.1|Name=mRNA_P-littoralis_Contig87.196.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=228bp
MATPAPAKGGEVASKARRPLPITAGEKIVEGERLRDEAHSLIEDRPKKAA
VKFRTVFAFTKGLIPHTSELAVYAAATGQQTVIDQQQQGFAGGARVSEGT
LPSRSAQPPTQEHRSGQAVLDSRSEARAPQCQHYEGAPESNEIGPGRGRR
GWHRPCHHRLERSRSGRGQKIDDTRQAAWILASSETRGRVRLVSFIGQRN
SFSYRFLARFPKATGFSKLKERLLIVA*
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mRNA from alignment at P-littoralis_Contig87:414282..419279-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig87.196.1 ID=mRNA_P-littoralis_Contig87.196.1|Name=mRNA_P-littoralis_Contig87.196.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4998bp|location=Sequence derived from alignment at P-littoralis_Contig87:414282..419279- (Pylaiella littoralis U1_48)
CGCTGATGCTTCAACGCCGACAAAACGGATAAAACACGTCGGGGGCACCG
CTCGTATTTTGACCCCCCCCCAGCTTCATACTCTGTGCGCTTTACTTCAT
GACACAGTCACGTCCTCGGTTATCAGCGGTTGGTTGCGTTTAGCGACTGG
GGACGCCACTACTGAGAGACGACGTTGATAATCAACCGCCCTCCGAACCC
AACGGGTAGTCTTTCCGCTCCACCCTTTTCCCCTTGATTGAATGGCTACT
CCGGCTCCAGCTAAAGGGGGTGAGGTTGCCTCGAAAGCTCGCAGGCCTCT
GCCTATTACCGCAGGGTACGTGTCTCGTTATGTAGTAGCTCGCATGTATA
GCTGTCTCTAGGGGAAAACGTCCCATGCTCATGTCCCGTCACCATTGGTG
CTGCTGTACTCCGGAGTATTTGTTGTTTTTACAGCTGTAACCATCATCAT
CTGCATATTTTTCGCCATTCCCGTCGTGCGTTGCAATGTGCTGCAGGACG
AGACTCTGCTTGTGTGTACTTGAATGTTGAACCGAACCGAACAATTTCAC
CCGAGCGATACTGCCGATCATGCAACGTAGCACTCCGACAGGACAAGATA
GTGCTGTCTACATATGATACGATCACAATGCCGTTGGTAATGATACCTGG
TGCTGCTGTACAACGGTTGAGTCAACATTGTTTTAAGCGTACTCGACGTA
TTTCTGTACTGCTGTTGTATCATATGATGTGTGGTTCCATTTTTACATTT
TTACTCTCAGTGATCGGAATTGGCACCCAATCTTGAATTCTCGAAAATCA
TCTTTTCTTTCGTGCGTCAATTCCGGTTTGTGTGTTTTGGCGATCGCCTC
TTCGGCTTTTCTCGCGGCGGCAGAGAGAAAATCGTTGAAGGCGAAAGACT
GCGAGACGAGGCACACTCGCTCATCGAAGACAGGCCCAAGAAAGCGGCGG
TCAAGTTCCGGACCGTGTTTGCCTTCACGAAGGGGTTAATCCCGCACACC
TCTGAGTTGGCTGTGTACGCGGCCGCAACGGGACAACAGACGGTCATCGA
CCAACAGCAACAAGGTGACCTTGAGCAGGAGCAGCAGCTGTAGCGCTGCA
GATTCAATTACCATAGCGGTACTGCTGCAGGGTACTCCTGGGTAATCTTG
AATACGATATATTAGACTCAACGGAAGACCGCTGTAGATCCAACTTTTTT
TAAATTTAAAATTATAAGGCCTGCTGAACTTAAAGCCCTTCTGCTGAATG
AACCCGAACACCTTTTCGTTTTCGTTCGGGATTATTCGGGTGTTTGCGCA
GAACGGACTATATTAAGGTTTCGGTTTGGTCTTTGTGTACATTTTTGTAT
CAGGAAAAATATATCTTCAGGAAAAGACCCAATTTGGTCTTTTAAAGACC
CACTTTTTTGGTCTTTTCCTCCGGCCTTTTGTGTCAAAAGACCTGAGCAA
AAAGCGCCTCAGTTTTTGCTCAGGTCCTTTTTATGGAACAGTTGTTTGAT
TGGTAGGATGCCCCAGATTGGTTGGGTTTATGCGGGACCACAGCAGTACT
GCTGCTGCAGAAATACAACACCACGGCCACGTAACAGACTGCTCTCGCAA
CGAAGACCTCACGTGGTACGTAAATATCACGCAAAACCTCTCGTGTCAGT
CTACCGCCAAAATGTACAAAAGTGACCAGCTCAGAGAAATGCAGAAGAGC
TAGCTGCCCAGGCACGCATTCATGGGTTAGAGAGGGAGTACAAAAGTACG
TGTGCGGAGAGTGTCAGCAGCATCTCGAAGGAAAAAATAAAAATAAAGGG
CGAACGGACCACTTCGAAACCTGAGTGAATCCTGAGTCGAGTCAGGTCTC
CGCAAACACCCGATTGACTGCGGTTTCTCAAAGTCTATCGACAGCTGACA
CTCCGTTGTTCACGTTGCACGATATTTTCCCCAGCCGCTGTACGCGCGTT
GGAGCTGTCATGCAACGAAGGGCTGGCCACGATCTTTTTCCGAAGTGGAG
ATCACAACAGAGCTTTAGGATACAGCGACAAGGTGTGTACCGGTCCGTAT
GTTTCGATATTCGCTTAGGCTGGATCTAATGGTCCACGATGTTGGTCCAC
GGATTTTTAAACATCGTGGAAAAGTCACCTTATGGACACGGATGTTGGCG
ATTGAGAATCTTCGACATCCATGGACCAACATCGTGGACCATTTTTCACG
AATGTTGGGCCCAACATCCGTGGCTCGGCATCCCCGAATTTTGGCTCACG
GATCTTGAGTTATGCCTGTTTAAAGCTACAAAGTGAGGTCGCGCCGCATC
CCCGAGCTGTTCTATTGTGAGCGCACACAAGCTCGGGCGCACCAACAACA
GCACCTAGCACGATGGAGCCTGATTCGAGCGTAGGAGACAGCGAACGACA
TGCGGAGCTCGCCGCTCTTCTGGTAGCAGCAATGCGGAGACTTTCGATTG
ATATTTTTATATTTTTCATCTTGTCGAGTACTGTACCCATTCCGCGTGAC
CACTAGATTCAACGATTCCGACATGGACGCGTGCTACTGCTGTACAGCAG
TACTTCTGTTGTGCGTGGAAGCACCAGTCAATGCGTTTGTGGCGTTCCGT
GCTACGTTGCTGGCGGTAAGTAAGTGTGTCTTGTGCTGCTGTGCGCGGCC
CTCCTCCTCCGCTGTATTATACTTGTACGTAAGGCCCGTGTCCTGCACGC
TTCTCGGAACAATATAAAACCAGGCCTGGCCAAAATCCGTGCCCACAATA
ATCCGTGTTTCCCATAACATGGGCTGTATGTTTTTTCGGCCCACGGATGT
TGCCCTCATATGTTTTGAGATCCGTGGGCCAACATCCGTGGACCATAAGA
TCCAGCCTACCACTTGTCACTCTTTTTTTGTAGGTCAGGTGCTGTGCACA
GCAGTGCGTTGAAAGGCAAACGGGTCAAGGCATCATGCCCCTGGGATTCG
AAATTTGCCTGGAATTTTGGATCAACAGCAAGTAACACTGACACGATCGA
CGGTATCGACACCGAAAATTCGGAACGCTCTCGGCCGGTCACCTCCCCCT
TACGTACCGCTTTTGTCCGGCTTTGACCCTACTTGTGTGAAATACTGCTG
TATTGAGGAGAAACAATCTGTCATGCATGGGTAGTTTTTTTTTTCAGAGA
GAGTGGGACTGGTTGTAGTGCAAGTTCATGGCTTTTTGTTTGTAGCTTGC
ACTAGATTATGGGTCGGGTGCGTAAGCAAGAGTGAAGATTAAAACGCCAA
CCACGAAACCCAATTTTCTGATGTTGCTACAAGTATTTCTGTGTGGATTT
CTCCAAGGAACTTATTTGCGTCGGGAGTATGGAATACAGCCGGCACACCA
CTTTCCAGTATATCTTTGCCCTCTTTTGACCGCATTTGGCAATCAACTCG
ATATCCGCTTTAAATTTTGTATTTGACAGGTTTTGCTGGCGGAGCCCGAG
TCAGCGAAGGCACTCTTCCGAGCCGGTCAGCTCAACCTCCGACTCAAGAA
CATCGAAGCGGCCAAGGTATGCATGTAGAAATTGCTTTCTCGACTGATAT
ATTAGTAAATCATAGGAGTATGTAACCATGCGAACCAACCGCCTGTTTTA
GGTGTCCATTTATGTAGATGCGAGTTTTGGATTGTCAGACGCCAAGTTGG
GAACAATTTAGAAATAAATATCGCACGGAACCATCGTGTCTGATCTCGGT
CATGAGTTCCAAGGTGCGCGTTCTGTGTGAATCCGATTTTGTCTTTTTAT
TCTGGATATACTGACCTCACCTCACAGGCCCCAGACGGATGTGTTTCCCC
ACGCTCTACTGTACCGCTGTACAGCACTGCTGTACCGGTAGTGGGCGACG
ATGCATCTGGTTGTCTAACGGCAGCCGAGTTTTTCTCTCCGGCACGCGGC
CGTGGTGGCGTAACTGGATGCCAGTTTACATTATGACTTTAGGGGGAGAC
GCCGTTTGTTCGACATCACACACGTGTGTAGACGTTGCTACAGTACGCAC
ATCCATATCGCAAAGCTACTGCAGACGTAGACGTAGGTGAAGATCCAGGA
CGCACCGTCAGCTGTCCACCCAATGTTGCAAGGACTTTGCGCTTGAATTC
AACACGGAGCGCTAAGTTGCTTCGACTTTTGAGGGTTCATGGGGGGGACT
TGGCGTGCTTTGCTTCGCGCGCCCGGCTCTTTTTGAGTTTTCCGGTGACC
TAAACACCAATTAATTTAGCAGCAGCAGCAGCAGCAGCAGAGATTGGACA
TGATGGCGAATTTTTGTGCCCTCAGTAACTTCTTGCTTTGTCTTCCCCTC
CTCCGCCTGTTGCGTTGTTGCTCTCGTGCTACAGCGGTGCTTGACTCGCG
CAGCGAAGCACGAGCCCCACAATGTCAACATTATGAAGGAGCTCCGGAAT
CTAACGAAATTGGCCCAGGAAGAGGGCGTCGAGGTTGGCATCGACCCTGC
CACCATCGCCTTGAGAGGAGCAGAAGCGGCCGCGGACAAAAGATAGATGA
CACTCGACAGGCCGCGTGGATACTGGCGTCAAGCGAAACGAGGGGTCGTG
TTCGCCTAGTTTCTTTCATAGGTCAACGCAACAGTTTTTCATACAGATTT
CTTGCCAGGTTCCCAAAAGCCACGGGGTTCTCAAAATTGAAGGAAAGGCT
TTTGATAGTCGCGTAACCGGTACGTGACAGCCACCACACGTACTGTAGTG
TGCAAATGCTGTTCCATCTGAACTGGGCTGGTATGGTACGAGCAACCGCT
GTCCTCACATCCTTGTGCTCCACTGCTTCGGTTGTCACGGCAGAGAGACT
GACTGGCAGGCTGCGTTTGCATCGTCCAAATGTCGTGCGCATTTCGGTCG
GGTTAGCGACTGAGTCTGTCACGCGACCGCACTGATTGGCCTATGAACAT
TTCAGATCAAGTAAGCACCCATATTCTACTCGGTGAGGTGTGAAATGTGA
CACTTTTTATGTAGCCTACCGAGCGCTGCAGAATAATCCAAACAACGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig87:414282..419279-

>mRNA_P-littoralis_Contig87.196.1 ID=mRNA_P-littoralis_Contig87.196.1|Name=mRNA_P-littoralis_Contig87.196.1|organism=Pylaiella littoralis U1_48|type=CDS|length=684bp|location=Sequence derived from alignment at P-littoralis_Contig87:414282..419279- (Pylaiella littoralis U1_48)
ATGGCTACTCCGGCTCCAGCTAAAGGGGGTGAGGTTGCCTCGAAAGCTCG
CAGGCCTCTGCCTATTACCGCAGGAGAGAAAATCGTTGAAGGCGAAAGAC
TGCGAGACGAGGCACACTCGCTCATCGAAGACAGGCCCAAGAAAGCGGCG
GTCAAGTTCCGGACCGTGTTTGCCTTCACGAAGGGGTTAATCCCGCACAC
CTCTGAGTTGGCTGTGTACGCGGCCGCAACGGGACAACAGACGGTCATCG
ACCAACAGCAACAAGGTTTTGCTGGCGGAGCCCGAGTCAGCGAAGGCACT
CTTCCGAGCCGGTCAGCTCAACCTCCGACTCAAGAACATCGAAGCGGCCA
AGCGGTGCTTGACTCGCGCAGCGAAGCACGAGCCCCACAATGTCAACATT
ATGAAGGAGCTCCGGAATCTAACGAAATTGGCCCAGGAAGAGGGCGTCGA
GGTTGGCATCGACCCTGCCACCATCGCCTTGAGAGGAGCAGAAGCGGCCG
CGGACAAAAGATAGATGACACTCGACAGGCCGCGTGGATACTGGCGTCAA
GCGAAACGAGGGGTCGTGTTCGCCTAGTTTCTTTCATAGGTCAACGCAAC
AGTTTTTCATACAGATTTCTTGCCAGGTTCCCAAAAGCCACGGGGTTCTC
AAAATTGAAGGAAAGGCTTTTGATAGTCGCGTAA
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