mRNA_P-littoralis_Contig87.103.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig87.103.2
Unique NamemRNA_P-littoralis_Contig87.103.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig87.103.2 vs. uniprot
Match: A0A6H5KFB9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFB9_9PHAE)

HSP 1 Score: 365 bits (937), Expect = 1.030e-111
Identity = 219/510 (42.94%), Postives = 295/510 (57.84%), Query Frame = 2 
Query:  785 GAVFQPVKAKLADFGAALTGALITNNTLELVNGTFFLGSPSLGSKLFIRSCYKELSALILGGASSDTFHNIVVTGTPGIGKSVFGFYLLYLLRCQGKTVVFELKGKWYRFSYAGVVQASLEAFNERGYMDDPNSWYLSDPEDRPREYFEGTTVVLVSPKYERVKGFLKLADAQQIFMPVWGLDELLKCQRAVFPHVPSTFVEEAFGVVGGVARAVFNELKYVQLKYGIEDAVNKLSLATLREAISLLTSS-GRLPTDITGDKLFHVLSDSSDGFKRYTVTFASNFTSELVIRKIAEKGRRSLLDFAGAAIDNEDVARMFGGGSVVGSLFEHAAHQVIGWDRAGEEPLKMAILIDSGG----VLSGTDSLNFSFEKKEGFKGETIYSSFDQGVYYTAVPLNYPAIDSFGMDRRGDTLFFFQMKYAGV------KAVIGSAVERYWRTAS--KGSVSVKNCVYVYVVPEEPQWRLQAIKSAGIDEVR-KLLSEASDDFLSACAVCVVAIPFR 2272
            G +   V   LADFGA LT A++ +NTLEL +GTFFLG P L SKLFIR CYK+LS LIL G +  T   IVVTGTPGIGKS FGFYL+YLLR QG TVV E K  W+RFS  GV      +F   GY+   ++WYLSDPEDRP+E     TVVL+SP+  RV  F+K   +++ +MP W LDEL +C++AVFPHVP T V E F  VGGVARAVF+  K  Q+   ++ A + + L  L++ +S       ++ TD +GD L H+L     GF+ ++V FAS F   + + ++ +K    L  F GAA  ++++          G  FE  AH+ IG   + ++   M IL  +      VL G + L  SF K++ F+G +   +   G YY     N+ A DSFG+D    TL+FFQ+K AG+      KAV  + VE+YWR A    G+   K  VY +VVPE   W  +A ++   D  R       +D F SAC VCV+ +P +
Sbjct:   30 GCLLVAVPKALADFGAVLTKAVVADNTLELADGTFFLGEPRLRSKLFIRPCYKDLSELILEGVTDGTMDKIVVTGTPGIGKSEFGFYLMYLLRGQGNTVVLERKDSWFRFSDEGVTVGYFYSFRRAGYLYGNSTWYLSDPEDRPKELLGLPTVVLLSPRKSRVNEFMKQPGSRRFYMPPWCLDELFRCRQAVFPHVPETDVRERFSKVGGVARAVFDAEKLKQVCLKMQAAASNMDLNLLQQILSRSRDDVDQVSTDRSGDALLHLLPIPETGFEEFSVDFASEFAHIVTLGELPKKEFAPLASFVGAAFAHDELGDKVTAERAAG--FETIAHKTIG-GASEQQWFDMRILSRASSSTKSVLEG-NRLRLSFVKEQSFEGNSFPDALVAGTYYRPGSPNFAAADSFGVDSGSKTLWFFQVKSAGLPPKEGEKAVKWTHVEKYWRRAKLHHGAPIKKRFVYAFVVPEGKVWN-KATETCEEDGGRGDWRRNVTDGFKSACDVCVIEMPLQ 534
[Close]
BLAST of mRNA_P-littoralis_Contig87.103.2 vs. uniprot
Match: D7G8Q1_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8Q1_ECTSI)

HSP 1 Score: 289 bits (740), Expect = 1.430e-87
Identity = 171/229 (74.67%), Postives = 187/229 (81.66%), Query Frame = 2 
Query:  407 MTSLSAMSEGDEEEGGGDYDAREAADGSPAADEIRAVQDEIRGVERKIEDAEEETAEVVKKIDDIEAAIAGGSKYLGMTDPEALLKQLGRKEEQXXXXXXXXX------------DLLLKKEDRLSRIEQLRANNSPAGAVFQPVKAKLADFGAALTGALITNNTLELVNGTFFLGSPSLGSKLFIRSCYKELSALILGGASSDTFHNIVVTGTPGIGKSVFGFYLLYL 1057
            MTSLSAMSEGDEEEGGGD+DAREAAD  PAADEIRAVQD+IRGVERK EDAE+ETAEVVKKIDDIEAAIAGGS+YLGMTDPEALLKQLGRKEEQXXXXXXXXX            +LLLKKEDR SRIEQLRANN+PA          ++DF AALTGA++T +TLEL NGTFFLG+  LGSKLFIR CYKE++ LIL G   D    +VVTGTPGIGKS FG+YLLYL
Sbjct:    1 MTSLSAMSEGDEEEGGGDHDAREAADRIPAADEIRAVQDDIRGVERKXEDAEKETAEVVKKIDDIEAAIAGGSRYLGMTDPEALLKQLGRKEEQXXXXXXXXXXXXXXXRELLLNELLLKKEDRFSRIEQLRANNAPAA------NKNVSDFAAALTGAVVTEDTLELANGTFFLGNSDLGSKLFIRHCYKEMADLILSGKVQD----VVVTGTPGIGKSTFGYYLLYL 219
[Close]
BLAST of mRNA_P-littoralis_Contig87.103.2 vs. uniprot
Match: D7FM56_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM56_ECTSI)

HSP 1 Score: 236 bits (601), Expect = 3.900e-68
Identity = 132/169 (78.11%), Postives = 136/169 (80.47%), Query Frame = 2 
Query:  182 MSTHCVSVLLLVCIAQACLAFVPSWTATFRSSRSQPPASAPAAATFSLSQPSGAICPVFGACGTCGAQYFYPVRGMTSLSAMSEGDEEEGGGDYDAREAADGSPAADEIRAVQDEIRGVERKIEDAEEETAEVVKKIDDIEAAIAGGSKYLGMTDPEALLKQLGRKEEQ 688
            MS +CVSVLLLV IAQACLAFVPSWTATFRSSRSQPPAS PAAATFSLSQPSG ICPVFGAC TCGAQ+FYPV GMTSLSAMSEG EEEGGGD+ AREAADGSPAADEIRAVQ                        D IEAAIAGGS+YLGMTDPEALLKQLGRKEEQ
Sbjct:    1 MSRNCVSVLLLVGIAQACLAFVPSWTATFRSSRSQPPASTPAAATFSLSQPSGPICPVFGACDTCGAQFFYPVPGMTSLSAMSEGGEEEGGGDHHAREAADGSPAADEIRAVQXXXXXXXXXXXXXXXXXXXXXXXTDGIEAAIAGGSRYLGMTDPEALLKQLGRKEEQ 169
[Close]
BLAST of mRNA_P-littoralis_Contig87.103.2 vs. uniprot
Match: D8LPP1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPP1_ECTSI)

HSP 1 Score: 180 bits (456), Expect = 1.180e-48
Identity = 114/149 (76.51%), Postives = 120/149 (80.54%), Query Frame = 2 
Query:  389 FYPVRGMTSLSAMSEGDEEEGGGDYDAREAADGSPAADEIRAVQDEIRGVERKIEDAEEETAEVVKKIDDIEAAIAGGSKYLGMTDPEALLKQLGRKEEQXXXXXXXXX-----------------DLLLKKEDRLSRIEQLRANNSPA 784
            FYPVRGMT LSAMSEGDEEEGGGD+ AREAAD  PAADEIRAVQDEIRGVERKIEDAEEETAEVVKKIDDIEAAIAGG++YLGMTDPEALLKQL +    XXXXXXXXX                 +LLLK EDRLSR EQ RANN+PA
Sbjct:    2 FYPVRGMTGLSAMSEGDEEEGGGDHHAREAADRLPAADEIRAVQDEIRGVERKIEDAEEETAEVVKKIDDIEAAIAGGARYLGMTDPEALLKQLEQLRRXXXXXXXXXXXXXXXXXXXXXXXXXXXELLLKTEDRLSRSEQFRANNAPA 150
[Close]
BLAST of mRNA_P-littoralis_Contig87.103.2 vs. uniprot
Match: D7G515_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G515_ECTSI)

HSP 1 Score: 162 bits (409), Expect = 2.000e-42
Identity = 102/146 (69.86%), Postives = 105/146 (71.92%), Query Frame = 2 
Query:  407 MTSLSAMSEGDEEEGGGDYDAREAADGSPAADEIRAVQDEIRGVERKIED-------AEEETAEVVKKIDDIEAAIAGGSKYLGMTDPEALLKQLGRKEEQXXXXXXXXXD----------LLLKKEDRLSRIEQLRANNSPAGAV 793
            MTS SAMSEGDEEEGGGD+DAREAADGSPAADEIRAVQ                   AEEETAEVVKKID IEAAIAGGSKYLGMTDPEALLKQLGRKEEQ        X           +LLKKEDRLSRIEQLRANN+PAG V
Sbjct:    1 MTSSSAMSEGDEEEGGGDHDAREAADGSPAADEIRAVQXXXXXXXXXXXXXXXXXXXAEEETAEVVKKIDYIEAAIAGGSKYLGMTDPEALLKQLGRKEEQLRRKEGKEXXXXXXXXXXXXILLKKEDRLSRIEQLRANNAPAGVV 146
[Close]
BLAST of mRNA_P-littoralis_Contig87.103.2 vs. uniprot
Match: A0A835Z6Q5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6Q5_9STRA)

HSP 1 Score: 170 bits (430), Expect = 4.990e-41
Identity = 136/456 (29.82%), Postives = 212/456 (46.49%), Query Frame = 2 
Query:  806 KAKLADFGAALTGALITNNTLELVNGTFFLGSPSLGSKLFIRSCYKELSALILGGASSDTFHNIVVTGTPGIGKSVFGFYLLYLLRCQGKTVVFELKGKWYRFSYAGVVQA-SLEAFNERGYMDDPNSWYLSDP--EDRPREYFEGTTVVLVSPKYERVKGFLKLADAQQIFMPVWGLDELLKCQRAVFPHVPSTFVEEAFGVVGGVARAVFNELKYVQLKYGIEDAVNKLSLATLREAISLLTSSGRLPTDITGDKLFHVLSDSSDGFKRYTVTFASNFTSELVIRKIAEKGRRSLLDFAGAAIDNEDVARMFGGGSVVGSLFEHAAHQVIGWDRAGE----EPLKMAILIDSGGVLSGTDSLNFSFEKKEGFKGETIYSSFDQGVYYTAVPLNYPAIDSFGMDRRGDTLFFFQMKYAGVKAVIGSAVERYWRTASKGSVSVK-NCVYVYVVPEE 2149
            ++ +  F  AL+ A   ++ L L +GT+F+G    G++++IRSCY+EL   I    +S T   +V+TGTPGIGKS +  Y L+ LR  G TVV+++   +YRFS   V  A ++ AF   G +  P+ W+L DP  +  P     G T+V VSP  ER K FLK   A   +MPVW  +E+ +C++ +F HVP + V++     GGV R V         +  ++ A+ K + A LR  I L        T    DK+ H+ +     F    + +AS +  + +     E  +  L  F  ++      AR+    ++ G +FE   H+++G     E    EP +            G  + NF+F +   F         ++GVYY     N  A DSF +      LF FQ+  A    V  +        A   S+  +   V  +VVP +
Sbjct:   80 RSSVVTFWRALSRASDDDDCLALKDGTWFMGDYVRGNRIYIRSCYRELMDTIKAMVTSGT-RRVVITGTPGIGKSCYALYWLWHLRRAGNTVVYQIGADFYRFSGELVQHADTIGAFKNAGGLWHPDVWFLCDPARDHEPYGGCLGVTLVFVSPSTERYKAFLKEPRATTRYMPVWSQEEVQRCRQLLFDHVPQSRVQDLLEQWGGVPRFVLQFADDDTQQAKLQQAIRKCATAGLRATI-LNAGEDAGSTAALSDKVLHMCTAD---FVHVRLMWASQYAFDALCEAQGEASKGELRAFIASS------ARLPSLATLRGLVFEPYVHRLLGNGSCFEYRVLEPAQ-----------HGVTTFNFAFRRSVTFARLRDIWRIEEGVYYAPRASNLSAGDSFAII--DGVLFIFQITVAAEHGVKKAGTLDIVEAACGMSIGARPEFVLAFVVPPD 511
[Close]
BLAST of mRNA_P-littoralis_Contig87.103.2 vs. uniprot
Match: A0A6H5KCR9_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCR9_9PHAE)

HSP 1 Score: 149 bits (376), Expect = 2.990e-38
Identity = 75/115 (65.22%), Postives = 84/115 (73.04%), Query Frame = 2 
Query:  785 GAVFQPVKAKLADFGAALTGALITNNTLELVNGTFFLGSPSLGSKLFIRSCYKELSALILGGASSDTFHNIVVTGTPGIGKSVFGFYLLYLLRCQGKTVVFELKGKWYRFSYAGV 1129
            G +   V   LADFGA LT A++ +NTLEL +GTFFLG P L SKLFIR CYK+LS LIL G +  T   IVVTGTPGIGKS FGFYL+YLLR QG TVV E KG W+RFS  GV
Sbjct:   11 GCLPVAVPKALADFGAVLTKAVVADNTLELADGTFFLGEPRLRSKLFIRPCYKDLSELILEGVTDGTMDKIVVTGTPGIGKSEFGFYLMYLLRGQGNTVVLERKGCWFRFSDGGV 125
[Close]
BLAST of mRNA_P-littoralis_Contig87.103.2 vs. uniprot
Match: A0A836CEN6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEN6_9STRA)

HSP 1 Score: 150 bits (378), Expect = 1.130e-35
Identity = 95/259 (36.68%), Postives = 133/259 (51.35%), Query Frame = 2 
Query:  824 FGAALTGALI-TNNTLELVNGTFFLGSPSLGSKLFIRSCYKELSALILGGASSDTFHNIVVTGTPGIGKSVFGFYLLYLLRCQGKTVVFELKGKWYRFSYAGVVQASLEAFNERGYMDDPNSWYLSDPEDRPREYFEGTTVVLVSPKYERVKGFLKLADAQQIFMPVWGLDELLKCQRAVFP------HVPSTFVEEAFGVVGGVARAVFNELKYVQLKYGIEDAVNKLSLATLREAISLLTSSGRLPTDITGDKLFHV 1579
            F  AL+ A +  +  L+L  GT+F+G+   GS ++IR CY  L   I    ++     +V+TGTPGIGK+ + FY L+ LR  G+TVV++L   WYRF  A  VQ S +AF   GY+DDP +             F G T+V V+P++ R   FLK   A + FMPVW  +ELL+C   +F        VP   V E F   GGV R V       + +  +  A++  S+  L  AI   T  G   T +  DKL H+
Sbjct:    1 FWRALSSASVDADGCLKLPAGTWFMGNRDFGSAIYIRDCYCNLMEQINKLVAARRVQRVVITGTPGIGKTCYAFYWLWHLRQTGRTVVYQLGPGWYRFCGATAVQGSRKAFLAAGYLDDPAAXXXX----XXXXXFGGITLVFVTPRWVRYHEFLKAPAATKRFMPVWSEEELLRCAELLFSGQDLERDVPQARVRELFRRWGGVPRYVLQYAHDDERQGTLTAAIHHCSVGDLHAAIRS-TGEGTGTTVVLSDKLVHI 254
[Close]
BLAST of mRNA_P-littoralis_Contig87.103.2 vs. uniprot
Match: A0A397UD55_9GLOM (Uncharacterized protein n=1 Tax=Gigaspora rosea TaxID=44941 RepID=A0A397UD55_9GLOM)

HSP 1 Score: 145 bits (365), Expect = 5.440e-33
Identity = 98/339 (28.91%), Postives = 165/339 (48.67%), Query Frame = 2 
Query:  815 LADFGAALTGALITNNTLELVNGTFFLGSPSLGSKLFIRSCYKELSALILGGASSDTFHNIVVTGTPGIGKSVFGFYLLYLLRCQGKTVVFE-------LKGKWYRFSYAGVVQASLEAFNERGYMDDPNSWYLSDPEDRPREYFEGTTVVLVSPKYERVKGFLKLADAQQIFMPVWGLDELLKCQRAVFPHVPSTFVEEAFGVVGGVARAVFNELKYVQLKYGIEDAVNKLS------LATLREAISLLTSSGRLPTDITGDKLFHVLSDSSDGFKRYTVTFASNFTSELVIRKIAEKGRRSLLDFAGAAIDNEDVARMFGGGSVVGSLFEHAAHQVI 1792
            L  F   L  A I NN L+L +GT+FLG    G+ L+IR CY  L+ +I     ++  +   +TG PGIGK+ FG+YLLYLL+ Q KT+V+        L  K Y F    +       FNE  Y+D+ + WY+ D +  P       T++  SP+ +  K F K+      FMP W  +E+ +C+  +F H+    VE+ +   GG+ R VF +      +  +E+A+NK +      +  +  A  +      + T++ G++      D    +    + FAS + +E VI K  +   + L +F  A+  + + +      ++ G +FE  AH+++
Sbjct:   36 LGKFWCFLENAKIDNNFLQLPDGTYFLGDKKQGTILYIRKCYLHLADIIF----NEKINRCRITGNPGIGKTFFGYYLLYLLQKQNKTIVYHKARQYPILFNKQYTFRSDNIFD-----FNE--YLDNTDVWYIVDGQ--PPLEVHAKTILFCSPQKQHYKEFDKMIGTSIRFMPAWSWNEINECRIGIFNHLEIAKVEDLYSRWGGIPRFVFEKALDSSQQNHLEEAINKCNTRLLDFVGEIDHADDISHRIVHIHTNLPGEE--EEKEDEETHYVNKFILFASEWVAEKVIDKFEKSYNQQLKNFVTASSSDNEYS------TLRGVIFEQIAHRIL 353
[Close]
BLAST of mRNA_P-littoralis_Contig87.103.2 vs. uniprot
Match: A0A397UC44_9GLOM (Uncharacterized protein n=1 Tax=Gigaspora rosea TaxID=44941 RepID=A0A397UC44_9GLOM)

HSP 1 Score: 138 bits (348), Expect = 1.230e-30
Identity = 90/332 (27.11%), Postives = 162/332 (48.80%), Query Frame = 2 
Query:  815 LADFGAALTGALITNNTLELVNGTFFLGSPSLGSKLFIRSCYKELSALILGGASSDTFHNIVVTGTPGIGKSVFGFYLLYLLRCQGKTVVFELKGKWYRFSYAGVVQASLEAFNERGYMDDPNSWYLSDPEDRPREYFEGTTVVLVSPKYERVKGFLKLADAQQIFMPVWGLDELLKCQRAVFPHVPSTFVEEAFGVVGGVARAVFNELKYVQLKYGIEDAVNKLS------LATLREAISLLTSSGRLPTDITGDKLFHVLSDSSDGFKRYTVTFASNFTSELVIRKIAEKGRRSLLDFAGAAIDNEDVARMFGGGSVVGSLFEHAAHQVI 1792
            L  F + L  A I NN L+L +GT+FLG    GS L+IR CY  L+ +I      +      +TG PGIGK+ FG+YLLY L  Q KT+V+    ++          +S + F+   Y+++ + WY+ D +  P       T++  SP+ +  K F K+   +  FMP+W  +E+ +C+  +F H+    VE+ +   GG+ R V     Y   +  +E+A++K +      +  +  A  +      + T++ G++  +   D    + +  + FAS + +E V+ K      + L +F  A++   +        ++ G +FE  AH+++
Sbjct:   78 LGKFWSFLKNAKIDNNFLQLPDGTYFLGDKKQGSILYIRKCYLHLADIIF----KEKMRRCRITGNPGIGKTFFGYYLLYFLSKQNKTIVYHKACQFPILFNKQNTFSSDKIFDFYEYLNNRDVWYIVDGQ--PPLEVRAKTILFCSPQKQHYKEFDKMVGTEIRFMPIWSWNEINECRIGMFNHLEIAKVEDLYSCWGGIPRFVLENALYSSQQNQLEEAISKCNNRLLDFVGEINHADDISHRIVHIHTNLPGEEEEN--EDEETHYIKKFLLFASEWVAEKVMDKFERNYNQLLRNFVTASLFENEY------NTLQGVIFERIAHRIL 395
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig87.103.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KFB9_9PHAE1.030e-11142.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G8Q1_ECTSI1.430e-8774.67Uncharacterized protein n=3 Tax=Ectocarpus silicul... [more]
D7FM56_ECTSI3.900e-6878.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LPP1_ECTSI1.180e-4876.51Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G515_ECTSI2.000e-4269.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z6Q5_9STRA4.990e-4129.82Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5KCR9_9PHAE2.990e-3865.22Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A836CEN6_9STRA1.130e-3536.68Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A397UD55_9GLOM5.440e-3328.91Uncharacterized protein n=1 Tax=Gigaspora rosea Ta... [more]
A0A397UC44_9GLOM1.230e-3027.11Uncharacterized protein n=1 Tax=Gigaspora rosea Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig87contigP-littoralis_Contig87:184078..190488 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog4792.ETI30206
Model size3031
Max annot lvl4776|Peronosporales
Hectar predicted targeting categorychloroplast
Exons3
Evalue1.11e-30
EggNOG OGs2CQRH@1|root,2R5I5@2759|Eukaryota,3Q7MI@4776|Peronosporales
DescriptionCrinkler (CRN) family protein
Cds size2115
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791744.0954342-UTR-P-littoralis_Contig87:184077..1848121680791744.0954342-UTR-P-littoralis_Contig87:184077..184812Pylaiella littoralis U1_48UTRP-littoralis_Contig87 184078..184812 -
1680791744.1518104-UTR-P-littoralis_Contig87:190307..1904881680791744.1518104-UTR-P-littoralis_Contig87:190307..190488Pylaiella littoralis U1_48UTRP-littoralis_Contig87 190308..190488 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791744.1100307-CDS-P-littoralis_Contig87:184812..1863051680791744.1100307-CDS-P-littoralis_Contig87:184812..186305Pylaiella littoralis U1_48CDSP-littoralis_Contig87 184813..186305 -
1680791744.1224115-CDS-P-littoralis_Contig87:187219..1872371680791744.1224115-CDS-P-littoralis_Contig87:187219..187237Pylaiella littoralis U1_48CDSP-littoralis_Contig87 187220..187237 -
1680791744.1371198-CDS-P-littoralis_Contig87:189703..1903071680791744.1371198-CDS-P-littoralis_Contig87:189703..190307Pylaiella littoralis U1_48CDSP-littoralis_Contig87 189704..190307 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig87.103.2prot_P-littoralis_Contig87.103.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig87 184813..190307 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig87.103.2

>prot_P-littoralis_Contig87.103.2 ID=prot_P-littoralis_Contig87.103.2|Name=mRNA_P-littoralis_Contig87.103.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=705bp
MSTHCVSVLLLVCIAQACLAFVPSWTATFRSSRSQPPASAPAAATFSLSQ
PSGAICPVFGACGTCGAQYFYPVRGMTSLSAMSEGDEEEGGGDYDAREAA
DGSPAADEIRAVQDEIRGVERKIEDAEEETAEVVKKIDDIEAAIAGGSKY
LGMTDPEALLKQLGRKEEQLRRKEEQLRDLLLKKEDRLSRIEQLRANNSP
AGAVFQPVKAKLADFGAALTGALITNNTLELVNGTFFLGSPSLGSKLFIR
SCYKELSALILGGASSDTFHNIVVTGTPGIGKSVFGFYLLYLLRCQGKTV
VFELKGKWYRFSYAGVVQASLEAFNERGYMDDPNSWYLSDPEDRPREYFE
GTTVVLVSPKYERVKGFLKLADAQQIFMPVWGLDELLKCQRAVFPHVPST
FVEEAFGVVGGVARAVFNELKYVQLKYGIEDAVNKLSLATLREAISLLTS
SGRLPTDITGDKLFHVLSDSSDGFKRYTVTFASNFTSELVIRKIAEKGRR
SLLDFAGAAIDNEDVARMFGGGSVVGSLFEHAAHQVIGWDRAGEEPLKMA
ILIDSGGVLSGTDSLNFSFEKKEGFKGETIYSSFDQGVYYTAVPLNYPAI
DSFGMDRRGDTLFFFQMKYAGVKAVIGSAVERYWRTASKGSVSVKNCVYV
YVVPEEPQWRLQAIKSAGIDEVRKLLSEASDDFLSACAVCVVAIPFRNSS
NDVE*
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mRNA from alignment at P-littoralis_Contig87:184078..190488-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig87.103.2 ID=mRNA_P-littoralis_Contig87.103.2|Name=mRNA_P-littoralis_Contig87.103.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=6411bp|location=Sequence derived from alignment at P-littoralis_Contig87:184078..190488- (Pylaiella littoralis U1_48)
TCAGCCGGCCCGCCCCCGGCGGCAACGGCAGAAGGAAATTAAAACCCCGG
TATCGTCTATCGTCAACAAATAATCCACGGACCCCCTTTCTGGGTCTGGA
AGAGCAAAGAATATACAGGGAAAAGAGCACCGCCGCCGCCGCACCCCTAC
GAAGCGAAGCGAAGAGAGCATTGGTTTCGAGATGTCAACGCATTGTGTGT
CGGTTCTTCTCCTGGTCTGTATCGCACAAGCATGCTTGGCCTTCGTCCCG
AGCTGGACTGCGACGTTCAGGTCGTCACGCTCGCAGCCCCCTGCTTCCGC
TCCTGCGGCGGCGACGTTTTCGCTCTCGCAGCCCTCAGGTGCGATCTGCC
CTGTGTTCGGGGCGTGTGGCACTTGTGGGGCGCAATATTTTTACCCGGTG
CGAGGGATGACGAGCTTGAGCGCGATGAGCGAGGGCGACGAGGAGGAGGG
GGGCGGCGATTATGATGCGCGAGAAGCTGCCGATGGCAGTCCAGCGGCGG
ACGAGATTCGTGCGGTCCAGGATGAGATCCGTGGTGTAGAGCGAAAGATC
GAGGATGCAGAGGAGGAGACGGCAGAGGTTGTCAAGAAGATTGATGATAT
TGAGGCTGCTATTGCGGGGGGCTCCAAGTACCTCGGAATGACCGACCCCG
AAGCCCTGTTGAAGCAACTAGGCAGGAAGGAGGAGCAACTACGCAGGAAG
GAGGAGCAGCTCCGCGACCTCCTTTTGAAGAAGGAGGACCGGCTCTCCAG
GATTGAGCAGCTCCGTGCCAACAACTCCCCCGCAGGTATAGAAGCGTCCC
ATTATGTGTGAAAATCCACAGCAGTGTACAGATTAGGAAATTTTGGCGCT
GACCGACCGTAAGTATTATTACGCGGGCTCCCTCGAGCGCTGAGCGTGAA
GCGGGGGGACTCACCCCTCTTAGATCAAGACGTTTTCTGTGACTTTCCAC
CCTCGGATCCTCGCGGAGTACCGCCCTCGCGAACGCTCAGCGAAAAGTCT
TTCCAGCGCGGCTCCGCTGCCCCCCTGCCGCGGGATCGACGCTGGGCCGG
CGACCCCAACAGCGCAACACTTAAAATCTCCCAAATCTCCACAATTTCCG
TTTCGAACCTTCGCCTCTCACCATGTGTGTCACGCCTCTGAGTTTCATTG
TAAATTTTAAATTTCCACACCGGGACTGTGTCAGCAACAATCACTCGCAC
GCTGCACGATGCTGATCAACTCGGGGTACGTGGACAGCAGTCAGCCGTCT
AGGTTGCGAGACACCTAGAGTGGCGTTGGCTCTCAGACGTACAAGGAGCG
CGCAACCGAAAAAAGCCGCTGAACATGACGAAATTTCCGTCGCGCACGTC
GGCTTTATTACCTCGTCAGGAACTGGATGATGAGCACTCGCACGATTGCA
CGATGCTGAGGACATGCATGTCCACAGCAGTCCGCCGTCCAGGTTGGGAC
ACACCTAGAGTCACGTTGTCTCTGAGTCGTAAGCAGACTCAAGCAAAACC
CGGAGGACACAATCCTCTTCAATTTTTCAAAACCATTTTTTTCGCAAACA
GGCGCTTAACACGCCGGCTCTATTACCGAACATTGCTTAGTTCTCCCCCC
AGGGTAGAGTTCTCCCCCCCCCCCCCCACCTTTTCCGCCTGGAAGCATGC
GTTCTTTGATTTCCCCCCCGGGTATATCGTATATCGCGGGGGAAAAAAAC
ATCCCCCCGGGTTACTCACTCTCCCCCCGGGGTAGCAATTTCCTTGGGGG
ATTGTGATTTTGTGGAGGTCGATTTTTGTTGGAAGAGAAGCGCAAACGTG
AACGTCACAGCAGTGCTTCCATTTTTCTTGCATGGAGCGTTCCTCTGGAA
GCCGTGTTGAACGTACCGAAATCCCGGGATGACCGGCACCTCGCAGAAAA
GGGAGAAAAAATATTCATTTTTCGATGAAATGTTTGTGGACATGAAACAT
TAGGACTTCGAAGCAAACAAAACACATGGTACAGCAGTAAAACCTCACCA
CGAATAAACCTTACACCAACAGCTCTACGTCCTGTGTACCAAAACGACTA
CGGCATCACTTGTGCAAAAGCAGCACGTGGGCTATTCTTCTTCTTGGCAT
CACTAGAGAGACGAGGCAAACTCCCCCAGCTGCTGCTGTTCCCCTCGTCT
TTTTCTTCGTCTTTACACTCCTCCCTCTGTTGTTACTGTTTGAAAGCTTT
CTCGTAAATCTTATTCGTCGCGGGTTCATGTGTTTTCTGTGTGTGGGTGT
GTGGACCACGTTTGTGTGCACAACCCCCCGGGGTAGATTCCCCCCGGGGT
AGGTAGCGTTCACAAGGTAAAGACCGACCCCCCGGGGTACTTGAATCTCC
CTCCGGGGGGATTGATTTCAGAAAAAAAAACGAACCCCTCCCCAGGGGGG
AGAACTAAGCAACGTACGGTAACTACGTCATTCGGTGGATTCAGATACCC
GTCTATCACGTATAGAGGCAACTACAATCAAAATATACTAACTCTTTGGA
TCTAGACGCACGAGCGTGCAGCATTTCACATTTTGGCTCTTCAGATCTCA
GCGAAGCGGCTCATTTTTGACCCCTCTCAGATTAATTCGCTGAGCGTCGC
CCGTCTCCGCGCGTGCGCACGGCACCACACCAGAACTCCCCCCTTCGCGA
GTGAGCCCACGAAAATCTTTCCTATGCGACCGCGCTGCGCACAAGGGCTA
ATTCGTACGCGCTCGGTTCAGGCGAGGTCCGTGAAACCCAGTGAGACCAC
TACCTAACTGGCTGATGGTAATGTCGCTACAAAACTTTCGCTTTCCACGC
CTGCGGCAAAATGCAAAAATTGAAAAATTCGGCAGCGAAGCGTTCACCCT
CTCAGCGCCCCCCGAGACGGCAAGGCAGGCCCTGAAATTCAGTAGTCTGG
GAAACAGCAGTAGTACCAGGAGCTCACAGGACACATACCACAGCGGATGA
GTAGGCAGTATCTCAGCCTAAGAACGTTCAATGTACGTGTCCGTTCAGCA
GCTGTAACGGGTTGAGACCTAAGGCTGAGTCGTGTGTGTTTGCGTGAAGA
AAGCACCTTTTGGCAGTCCTGCGCTGAAGAATCCTCTTCTTTTGAGGCAA
TGAAACAGATTGGATGCTCTTTTTCGTTTTCGCCACTCGCATCAAAGATA
CCGTACTCACCCAGTTACCCTTGGTATGCCGGGTAACAATGACACACATC
CGTATGTTTGCTTTATACCGGTGCTGCACGCATGGCATGCTCGGACATCA
GGCGCTGTTTTCCAACCAGGTATGTTGATACGTAGGTGACAAGCGTTCTC
GACCTCCGTATGAACATGATTTTTTTGCCGCGGATCGATGGTGCACGCGG
AGACGATCATTTTGGTTAAAACACATAATTCTAAATGCGAGATCGAGCAC
TCATATAGTTGAGAACGCACACAGGGAGGAGTAGGTGTCCTTGCTACTTT
TTGTTCCATTCCAATAGACCCGAACAGAGTCCTAACCCTCCACATCTGGG
ATCGAATCGTCTGGTCTTCCCAACGCCCACGAAATAATACCAGATCGTGT
GGAACAGCAGTCGAGGAGTAGTCACCTGGTGGCCGGTAGATACCTGTAGA
ATGTGCGGGGACGAAGACCGATAGTTTTTTGCTGTGCAGTAGCACCTCGA
TTCCACCTTCGACGCGCACTTACACTATGGAGGTGCATCATGTGTGCTGC
CATGATATTCTTCCGTGCACTCTTGGTTCTACTGAAGTGGGCTACAACAG
CAGGGTCCTCGCTCTTCTTTTTTTACGCACGCTACACCCGTGTTGCCTCC
GTTGGAAAGGTCATGTGGTTTCAACAGCGCCGAACTCGCGTGATGGCGGG
TTCGGTCTCACACCATGTCCTGAATTCGACCGAGGGTATTTGTTGCGTTT
GTTGTCGCCCGACATAAGCTTGGTTATGATGCGCCTCTTTTGTATTTCGA
CGAAGAATCTCGCTTCTTCTCCTGTTACCGTGCTTGTTGGAAGCGATTTA
TTTTCCGTCGTCCTAGCATCTCTCGTGCCCGTTTCGTATTTTATTGGATA
CAAACCCCCATGCAGACCCCCGTCTGTGACGTTGTCCCTAGCGCCGATTT
TTGTGCTTCTTCGGCTGAACAAAATATAACACACGTTTCTTCTGTCATGG
ACGGACCTATTTTTTTTCCTCTGCCCGTTGCAGTCAAAGCAAAACTCGCA
GATTTTGGGGCCGCTCTCACCGGAGCCCTGATCACAAACAACACCCTGGA
ACTAGTAAATGGCACCTTCTTCCTCGGCAGCCCTTCGTTGGGATCCAAGT
TATTCATCCGTTCTTGTTACAAAGAGTTGTCAGCGCTGATCTTGGGTGGT
GCTAGCAGCGACACTTTTCACAATATTGTTGTTACAGGCACTCCCGGAAT
CGGCAAGTCAGTGTTTGGTTTCTATCTGCTGTATCTGCTTCGCTGCCAAG
GAAAGACTGTTGTGTTCGAGCTAAAGGGCAAATGGTATCGGTTCAGTTAT
GCTGGGGTGGTTCAAGCAAGTTTGGAAGCTTTTAATGAACGTGGTTATAT
GGATGACCCAAACAGTTGGTATTTGAGTGACCCGGAGGACCGCCCTAGGG
AATATTTTGAAGGTACAACGGTTGTGTTGGTGTCGCCCAAGTATGAAAGA
GTCAAGGGGTTCTTGAAGCTAGCCGATGCCCAGCAGATTTTCATGCCAGT
TTGGGGCTTGGATGAGCTACTGAAATGTCAGCGAGCTGTTTTCCCTCATG
TACCAAGTACCTTCGTGGAGGAAGCTTTTGGTGTAGTTGGAGGTGTGGCG
CGAGCAGTCTTCAACGAATTGAAGTATGTGCAACTCAAATATGGAATAGA
GGATGCGGTGAACAAGTTAAGTTTGGCAACGTTGAGGGAAGCAATTTCGC
TTCTGACTTCGTCGGGCCGCCTCCCAACCGATATCACTGGTGACAAACTC
TTCCATGTCTTGTCAGACTCTAGCGATGGTTTCAAACGTTACACTGTCAC
GTTCGCCAGCAATTTCACGAGTGAGTTGGTTATACGAAAAATTGCGGAGA
AGGGAAGACGTAGTCTACTAGACTTCGCGGGAGCCGCAATCGACAATGAA
GATGTTGCCAGGATGTTTGGGGGAGGAAGTGTTGTGGGGAGCTTGTTTGA
ACACGCTGCACACCAAGTAATTGGTTGGGACCGAGCCGGCGAAGAACCGT
TGAAAATGGCAATCCTCATCGATAGCGGTGGGGTGTTGTCAGGAACGGAT
TCCTTAAACTTTAGTTTCGAAAAGAAGGAAGGATTCAAGGGCGAAACTAT
TTATTCATCGTTTGACCAAGGGGTATACTACACGGCCGTGCCCCTTAATT
ATCCAGCTATCGATTCGTTCGGTATGGATAGGCGTGGTGACACGTTGTTC
TTTTTCCAGATGAAATATGCCGGTGTTAAGGCTGTTATCGGAAGTGCAGT
TGAACGGTACTGGCGCACTGCGTCCAAGGGTTCTGTGTCAGTCAAGAATT
GTGTTTACGTTTACGTGGTCCCAGAGGAACCCCAATGGCGGTTGCAGGCG
ATCAAGTCGGCCGGGATTGACGAGGTCAGGAAATTGCTGTCGGAAGCAAG
TGATGATTTTCTGTCAGCATGTGCTGTATGCGTTGTCGCGATTCCATTCA
GAAATTCTTCGAATGATGTGGAATAGTCCATCTATGTCGCTGAAGCTAAG
GCTGCTGAATACTGTCTTGACGCGCGTTTTCGCGATGGATGATTGTATGA
CATCGATCAAGTCCCGTGTATCGTACATCCGAATCAGCGGGTGTGGGCAA
AAAACGCCGGCTGCGGAATCTAAAACTCTTGTGGAAGTAATTTGGAAGTT
GCCTAGGCAGTCTTCAGCGAGGTTTCGTCGTAGAGCGTCGGAAACAATGT
GTCGTGTGATGAGGGGCGATCCAGATTTGGTCCGAGATATCGAGGGGGGG
TCGAATCATCCAATACGCTTTGCTTAATCCATTCGAGTACAAGGAGGTCG
AGAGGTCGAACGAACATGGTCAAGAAGTCTCTCGTACGTGTCACTCTTGC
CTTTACTGTTCACGGAGGAAAACAAGCGAGAACACCTTCGGGAAAAATCG
ATGTACTCAGCGGTACCGAGGTGATAGAAGTGAAGCGTTGCAGCGAGTAG
AAGCACGGGCTCGGGCAGATCTTCGCTTGCCAGTTATACTTCCCTCTTTA
GACCAAGCGTCTAGACCTCTTCGCATACACAGCCGACGTCGACAAGTGCA
AATATGTTGCGTTAGCCAAGTAACATCGGATTATCCTAATTGAAACGGAT
TTATAGTTGAGAGCGAAAATCACCCGGATGACACAACCCAAGGCAATGCA
CCTAAGCTCTCCAAAGAGCCTTACAACACTCACGATGCACACAACAAAAG
CCTAACTTCCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig87:184078..190488-

>mRNA_P-littoralis_Contig87.103.2 ID=mRNA_P-littoralis_Contig87.103.2|Name=mRNA_P-littoralis_Contig87.103.2|organism=Pylaiella littoralis U1_48|type=CDS|length=2115bp|location=Sequence derived from alignment at P-littoralis_Contig87:184078..190488- (Pylaiella littoralis U1_48)
ATGTCAACGCATTGTGTGTCGGTTCTTCTCCTGGTCTGTATCGCACAAGC
ATGCTTGGCCTTCGTCCCGAGCTGGACTGCGACGTTCAGGTCGTCACGCT
CGCAGCCCCCTGCTTCCGCTCCTGCGGCGGCGACGTTTTCGCTCTCGCAG
CCCTCAGGTGCGATCTGCCCTGTGTTCGGGGCGTGTGGCACTTGTGGGGC
GCAATATTTTTACCCGGTGCGAGGGATGACGAGCTTGAGCGCGATGAGCG
AGGGCGACGAGGAGGAGGGGGGCGGCGATTATGATGCGCGAGAAGCTGCC
GATGGCAGTCCAGCGGCGGACGAGATTCGTGCGGTCCAGGATGAGATCCG
TGGTGTAGAGCGAAAGATCGAGGATGCAGAGGAGGAGACGGCAGAGGTTG
TCAAGAAGATTGATGATATTGAGGCTGCTATTGCGGGGGGCTCCAAGTAC
CTCGGAATGACCGACCCCGAAGCCCTGTTGAAGCAACTAGGCAGGAAGGA
GGAGCAACTACGCAGGAAGGAGGAGCAGCTCCGCGACCTCCTTTTGAAGA
AGGAGGACCGGCTCTCCAGGATTGAGCAGCTCCGTGCCAACAACTCCCCC
GCAGGCGCTGTTTTCCAACCAGTCAAAGCAAAACTCGCAGATTTTGGGGC
CGCTCTCACCGGAGCCCTGATCACAAACAACACCCTGGAACTAGTAAATG
GCACCTTCTTCCTCGGCAGCCCTTCGTTGGGATCCAAGTTATTCATCCGT
TCTTGTTACAAAGAGTTGTCAGCGCTGATCTTGGGTGGTGCTAGCAGCGA
CACTTTTCACAATATTGTTGTTACAGGCACTCCCGGAATCGGCAAGTCAG
TGTTTGGTTTCTATCTGCTGTATCTGCTTCGCTGCCAAGGAAAGACTGTT
GTGTTCGAGCTAAAGGGCAAATGGTATCGGTTCAGTTATGCTGGGGTGGT
TCAAGCAAGTTTGGAAGCTTTTAATGAACGTGGTTATATGGATGACCCAA
ACAGTTGGTATTTGAGTGACCCGGAGGACCGCCCTAGGGAATATTTTGAA
GGTACAACGGTTGTGTTGGTGTCGCCCAAGTATGAAAGAGTCAAGGGGTT
CTTGAAGCTAGCCGATGCCCAGCAGATTTTCATGCCAGTTTGGGGCTTGG
ATGAGCTACTGAAATGTCAGCGAGCTGTTTTCCCTCATGTACCAAGTACC
TTCGTGGAGGAAGCTTTTGGTGTAGTTGGAGGTGTGGCGCGAGCAGTCTT
CAACGAATTGAAGTATGTGCAACTCAAATATGGAATAGAGGATGCGGTGA
ACAAGTTAAGTTTGGCAACGTTGAGGGAAGCAATTTCGCTTCTGACTTCG
TCGGGCCGCCTCCCAACCGATATCACTGGTGACAAACTCTTCCATGTCTT
GTCAGACTCTAGCGATGGTTTCAAACGTTACACTGTCACGTTCGCCAGCA
ATTTCACGAGTGAGTTGGTTATACGAAAAATTGCGGAGAAGGGAAGACGT
AGTCTACTAGACTTCGCGGGAGCCGCAATCGACAATGAAGATGTTGCCAG
GATGTTTGGGGGAGGAAGTGTTGTGGGGAGCTTGTTTGAACACGCTGCAC
ACCAAGTAATTGGTTGGGACCGAGCCGGCGAAGAACCGTTGAAAATGGCA
ATCCTCATCGATAGCGGTGGGGTGTTGTCAGGAACGGATTCCTTAAACTT
TAGTTTCGAAAAGAAGGAAGGATTCAAGGGCGAAACTATTTATTCATCGT
TTGACCAAGGGGTATACTACACGGCCGTGCCCCTTAATTATCCAGCTATC
GATTCGTTCGGTATGGATAGGCGTGGTGACACGTTGTTCTTTTTCCAGAT
GAAATATGCCGGTGTTAAGGCTGTTATCGGAAGTGCAGTTGAACGGTACT
GGCGCACTGCGTCCAAGGGTTCTGTGTCAGTCAAGAATTGTGTTTACGTT
TACGTGGTCCCAGAGGAACCCCAATGGCGGTTGCAGGCGATCAAGTCGGC
CGGGATTGACGAGGTCAGGAAATTGCTGTCGGAAGCAAGTGATGATTTTC
TGTCAGCATGTGCTGTATGCGTTGTCGCGATTCCATTCAGAAATTCTTCG
AATGATGTGGAATAG
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