mRNA_P-littoralis_Contig869.22.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig869.22.1
Unique NamemRNA_P-littoralis_Contig869.22.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig869.22.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig869contigP-littoralis_Contig869:28886..30686 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size354
Hectar predicted targeting categoryother localisation
Exons3
Cds size225
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791741.588466-UTR-P-littoralis_Contig869:28885..289611680791741.588466-UTR-P-littoralis_Contig869:28885..28961Pylaiella littoralis U1_48UTRP-littoralis_Contig869 28886..28961 -
1680791741.6381705-UTR-P-littoralis_Contig869:30633..306861680791741.6381705-UTR-P-littoralis_Contig869:30633..30686Pylaiella littoralis U1_48UTRP-littoralis_Contig869 30634..30686 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791741.601768-CDS-P-littoralis_Contig869:28961..290191680791741.601768-CDS-P-littoralis_Contig869:28961..29019Pylaiella littoralis U1_48CDSP-littoralis_Contig869 28962..29019 -
1680791741.6120157-CDS-P-littoralis_Contig869:29572..297081680791741.6120157-CDS-P-littoralis_Contig869:29572..29708Pylaiella littoralis U1_48CDSP-littoralis_Contig869 29573..29708 -
1680791741.624775-CDS-P-littoralis_Contig869:30602..306331680791741.624775-CDS-P-littoralis_Contig869:30602..30633Pylaiella littoralis U1_48CDSP-littoralis_Contig869 30603..30633 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig869.22.1prot_P-littoralis_Contig869.22.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig869 28962..30633 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig869.22.1

>prot_P-littoralis_Contig869.22.1 ID=prot_P-littoralis_Contig869.22.1|Name=mRNA_P-littoralis_Contig869.22.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=75bp
MGHRALGTSVGPGDARPVQDASAPPAAAPPVHPGDLVSTTKTMGPRRSIR
PWGSQRTLHASPRPCRMRTSPRTS*
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mRNA from alignment at P-littoralis_Contig869:28886..30686-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig869.22.1 ID=mRNA_P-littoralis_Contig869.22.1|Name=mRNA_P-littoralis_Contig869.22.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1801bp|location=Sequence derived from alignment at P-littoralis_Contig869:28886..30686- (Pylaiella littoralis U1_48)
CCCAATGTACGTGTGCTGCTAAGAGAGTTACACCTCCGACCTCCCGTCAC
ACGATGGGACATCGAGCTCTTGGTACTTCTGTTGGTGAGTGATTTCCTGC
TGTGTAATCGGTCATGCGAGATAATGCACACTTTTCTTCAACGGCACATC
TCTGACTCTCTTATCCTGTGCGACGTATCATAGCCGCCCGCTTGCTCAAG
CATTATCGTATCGTATGTATACAACAGTGTGCTGCTGTACAGCAGCACAT
CAGTATACCAGATGCGTGGAGCAGAGAGCATGCGGCCATGCAGTGTGGTC
GAGAGTGTGTGGACTTGATAGCAAACGGGGTGTATTGTACTTTGATCTCA
GGCCAGCGTGTGTGTGTGTGTGTGTGTGTGTTTTTTTTTCGCGTATGATC
TAACTACACTGCTGTCGTACCGCAGTTACAGCAGTCAGTCTAGGAGGGTG
CGCACAAACAGCCCGTCACAGCACGAGATCATACTCGTACTCTGTACGGG
TAGTTTCGTCTTGCACCAGCAGAACCTTGCCCCTCGTTGTATACTTTTGT
GCTCGGTGTTGGGGATTGTCGCAAGATATGTACCACCGGTGTATGTATAG
TAGGTTCATCATGAGCCCATGCGTAGTTCAACCTACTGTAAACGACACAA
GTGTGCAGAGGAGGGATGCGACTTGTTGCTTCCCTGGTAGTGATGAACTG
CTGCCACACCGTTGTTGTGATTCGAATACCGCTCCCCCGATTTAGAGATG
GAGGCGTTTTGGGTAGGATCAAGTTGAGCTCTGATCTTGGTACCCACGTG
GAGGCGTTTTCTGTTCAAATTCGGACCACAATTGAGCTCCCGTTTCCCCG
TTTCCTCCCCCACCACAATCACTCGCTGCTCATCTTGTCCTCTGCCCAAA
TAAATTTGCCAACTTCGTTCTCATCATGTCCGCCCAACTTCGTGACCTTG
GTCTAACAAACCGCAGCAACACCAGCAGGGCCGGGCGACGCACGTCCAGT
TCAGGACGCAAGCGCACCACCAGCAGCAGCTCCGCCGGTTCATCCCGGCG
ACCTCGTCTCAACGACGAAAACGATGGGTCCACGTCGCAGCATCCGGCCC
TGGGGCTCGCAAAGGTAAGTAACGGGTGTTTGGGAGTGATACTGCCGTAT
TTGTAGGGACTAGGAATGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGCACATCACGAGCATGCATGAGACCCCAAAGAGGCTA
GATTGATCTGTCGTGGCGAAGAACAGCCTGCGAATGTGGAGAGGCTAGAT
TGTGTTTTGGATGGCGTAGACCAGTCTGCGGGTGTGCTGTAGAGGTGGCA
GTTTTTTTTGGGTGGCTGACAGCAGTCTGCCACTGTTTGTGGGGTGGTGA
AAGCATGCAAGGGTAACCGTGTCGGGGGTGTGTGCTGTGGTGTCACCTAT
TCTGGGCGTGGTAGTGTTTGTCTCAACATAACCCTGAGACGGATGATCAC
TCTTTGAACCCTCTTGGAGTACCGGCAAACTCGCCACACCTCATGTGCTT
GTAACCCCGCTTACACAAAACGTGTGTCACCATTGATTTCGTACTTTAAG
TCAACAGAACACGCCTCCACACCGAACGCAAACCTCTACTGCCCCCCTCC
TCCCTTGGTGCTACTAGGACATTGCACGCAAGTCCAAGACCATGCCGAAT
GAGGACGTCGCCGCGTACTTCATGAAAGAAGTGGGGCAGACGTGGTCTCC
GGCGCTCAAGACGTTGATCGCCGTCAGCCTCCTCAAGGAGTCAGGGCTAC
C
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Coding sequence (CDS) from alignment at P-littoralis_Contig869:28886..30686-

>mRNA_P-littoralis_Contig869.22.1 ID=mRNA_P-littoralis_Contig869.22.1|Name=mRNA_P-littoralis_Contig869.22.1|organism=Pylaiella littoralis U1_48|type=CDS|length=225bp|location=Sequence derived from alignment at P-littoralis_Contig869:28886..30686- (Pylaiella littoralis U1_48)
ATGGGACATCGAGCTCTTGGTACTTCTGTTGGGCCGGGCGACGCACGTCC
AGTTCAGGACGCAAGCGCACCACCAGCAGCAGCTCCGCCGGTTCATCCCG
GCGACCTCGTCTCAACGACGAAAACGATGGGTCCACGTCGCAGCATCCGG
CCCTGGGGCTCGCAAAGGACATTGCACGCAAGTCCAAGACCATGCCGAAT
GAGGACGTCGCCGCGTACTTCATGA
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