mRNA_P-littoralis_Contig869.17.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig869.17.1
Unique NamemRNA_P-littoralis_Contig869.17.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig869.17.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig869contigP-littoralis_Contig869:27103..28126 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size540
Hectar predicted targeting categoryother localisation
Exons2
Cds size312
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791741.455874-CDS-P-littoralis_Contig869:27102..272611680791741.455874-CDS-P-littoralis_Contig869:27102..27261Pylaiella littoralis U1_48CDSP-littoralis_Contig869 27103..27261 -
1680791741.472281-CDS-P-littoralis_Contig869:27747..279001680791741.472281-CDS-P-littoralis_Contig869:27747..27900Pylaiella littoralis U1_48CDSP-littoralis_Contig869 27748..27900 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791741.484256-UTR-P-littoralis_Contig869:27900..281261680791741.484256-UTR-P-littoralis_Contig869:27900..28126Pylaiella littoralis U1_48UTRP-littoralis_Contig869 27901..28126 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig869.17.1prot_P-littoralis_Contig869.17.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig869 27103..27900 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig869.17.1

>prot_P-littoralis_Contig869.17.1 ID=prot_P-littoralis_Contig869.17.1|Name=mRNA_P-littoralis_Contig869.17.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=104bp
MKSTLNHDFHEVLGNNTKGAVRKGAENLLKAGEPITSETIFPAARRVFRN
QHSKVEEMVGNMVMERTVNPARHCRGTPARSPEDRVPMRTIEVFGCAPSS
FFNF
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mRNA from alignment at P-littoralis_Contig869:27103..28126-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig869.17.1 ID=mRNA_P-littoralis_Contig869.17.1|Name=mRNA_P-littoralis_Contig869.17.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1024bp|location=Sequence derived from alignment at P-littoralis_Contig869:27103..28126- (Pylaiella littoralis U1_48)
GGATTTCGCAGAGGGTGTTTGGGTGAACTCACAAATTTGGAGGTTTGCTT
TTTTTTTTTTTTCAACCCATCAATCGGTCGCCCCTGTATTACTTCGCACA
GCCGCTTTCAGTAAGTAAGAGTAGTGATTTCGTTTGTCTGTTTAATGCTC
ATTTGCCGCTATTGCCCCTTTCTATGCGTCGCGTGCAACCCATCTCGTAG
AGCGCTTGGTTCGCTCGGTAATTCCCATGAAGTCCACCCTAAATCACGAT
TTCCACGAGGTGTTGGGTAACAACACCAAGGGCGCCGTCCGCAAGGGGGC
GGAGAACCTTCTGAAGGCGGGGGAGCCTATCACGAGCGAGACCATCTTCC
CTGCCGCCCGTCGAGTGTTTCGGAACCAGGTTTGTCAAGGGGCACCCTGA
TGGGAGTTTTACAAATCATTGACATGCCGTCGGCTATCCCCCCCCCCCCC
TCCACTAGAGCAGAAGATAATGCAGGGGGAGTTTGTTATTTTTGTTTCCC
TCCCCCCCCCCTCCCATCTTCCTGTGTTTTGCTACATACGTGTTCTCATG
TTCGATCAAAGCATAACGACTCATTTTGAATCCACGGCCACTGGTGCCGT
ATATTTCATGTATTTCATCTCTCAGGTAGTCTGGTACATTAGGGATTCCT
CTTGTAACACATTTGTTAAAGTTTTGTCTGTTTGTTGTGTTGCACGCGAA
CAGCGGCCTCGAGCTGTGGTGTTGACGCGTTCGTGTGGTGGAGCGGCACA
AATAATGTTGAGCCCAAAAGAAAAAACATCGCATAACGCTTGCTGATTGG
TACGTTGACCCTGGTCTTGCTTGAAATGTTTACACATTGCTCTTCTCTCT
GTTCCCCCATGCCAGCACTCTAAGGTGGAGGAGATGGTTGGCAACATGGT
CATGGAGCGCACGGTGAACCCGGCAAGGCACTGCCGGGGAACCCCCGCAA
GGTCGCCTGAAGACCGCGTCCCGATGCGCACGATCGAGGTGTTTGGCTGC
GCCCCATCCTCATTCTTCAACTTC
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Coding sequence (CDS) from alignment at P-littoralis_Contig869:27103..28126-

>mRNA_P-littoralis_Contig869.17.1 ID=mRNA_P-littoralis_Contig869.17.1|Name=mRNA_P-littoralis_Contig869.17.1|organism=Pylaiella littoralis U1_48|type=CDS|length=312bp|location=Sequence derived from alignment at P-littoralis_Contig869:27103..28126- (Pylaiella littoralis U1_48)
ATGAAGTCCACCCTAAATCACGATTTCCACGAGGTGTTGGGTAACAACAC
CAAGGGCGCCGTCCGCAAGGGGGCGGAGAACCTTCTGAAGGCGGGGGAGC
CTATCACGAGCGAGACCATCTTCCCTGCCGCCCGTCGAGTGTTTCGGAAC
CAGCACTCTAAGGTGGAGGAGATGGTTGGCAACATGGTCATGGAGCGCAC
GGTGAACCCGGCAAGGCACTGCCGGGGAACCCCCGCAAGGTCGCCTGAAG
ACCGCGTCCCGATGCGCACGATCGAGGTGTTTGGCTGCGCCCCATCCTCA
TTCTTCAACTTC
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