mRNA_P-littoralis_Contig868.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig868.1.1
Unique NamemRNA_P-littoralis_Contig868.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig868.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig868contigP-littoralis_Contig868:2247..3045 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size164
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size162
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791740.8750453-CDS-P-littoralis_Contig868:2246..23271680791740.8750453-CDS-P-littoralis_Contig868:2246..2327Pylaiella littoralis U1_48CDSP-littoralis_Contig868 2247..2327 +
1680791740.886021-CDS-P-littoralis_Contig868:2963..30441680791740.886021-CDS-P-littoralis_Contig868:2963..3044Pylaiella littoralis U1_48CDSP-littoralis_Contig868 2964..3044 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig868.1.1prot_P-littoralis_Contig868.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig868 2247..3044 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig868.1.1

>prot_P-littoralis_Contig868.1.1 ID=prot_P-littoralis_Contig868.1.1|Name=mRNA_P-littoralis_Contig868.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=54bp
VDVTDASPVVAIPKSRCQGFGGGSLCEVQQLQQQVRTDRDAGSGSCDENT
VSRT
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mRNA from alignment at P-littoralis_Contig868:2247..3045+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig868.1.1 ID=mRNA_P-littoralis_Contig868.1.1|Name=mRNA_P-littoralis_Contig868.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=799bp|location=Sequence derived from alignment at P-littoralis_Contig868:2247..3045+ (Pylaiella littoralis U1_48)
GTGGATGTCACGGACGCGTCGCCGGTGGTTGCTATCCCGAAAAGTAGGTG
CCAGGGTTTTGGTGGCGGAAGCCTTTGCGAGGTATGTCGGAGGGTGGTGC
AAGCCGGAGTTCGACGCACCCCCCGGGGAAGATTGTTGCTTTTGCATGGG
GTAAAAATGTGCGGGTATGGTCGATACAAACGAAACAATCTCGTTGCAGA
GAGCTTTTTGAAGGTGTGCTTTGTCGCTGTGGTTCCTGATGTAGCAGTAC
AGTATTCTGGTGCCACCCAAAGTAAATACCGGCCATCCGTCCACACCGAT
GTGGCCGATAATTGGGAGAGCTTCCCCCTATTGATCACTCTCGAAATTAT
TTGTCAGGCGCAGGATGTGTTTTGCGGGTAGAAGGTGCCTTTGACGTCGT
GCGTGCAGTGATACACGTTGTTGCTGTTGAGAGTATGTTTTCATATATGC
TGCTCTGGTTGAACGGTCCGTCATCTCAAATTTGTCGTGAGTTTTCACCA
AAAAAAAACAGCACTGCACCTCACCCGGAAAGTTCACCTACAAACAAAAA
CGAGACGTCACCCTGTCCCGACGTGAACTAGGACAGAAACTGCTGCATCA
GCGCTGCGACGTAGGCATTTAAAAAAAACGCCTTTGACGGGGGAACAGTT
TACTACTGTGTGTTTTCTGATCCGTCCCGCTGCTGCCGTCGGATGCAATT
CCTCTCACCTTTGCCAGGTGCAACAGCTGCAACAACAAGTGCGAACAGAC
CGCGACGCGGGCTCTGGGTCGTGTGATGAAAATACCGTTTCTCGGACCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig868:2247..3045+

>mRNA_P-littoralis_Contig868.1.1 ID=mRNA_P-littoralis_Contig868.1.1|Name=mRNA_P-littoralis_Contig868.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=162bp|location=Sequence derived from alignment at P-littoralis_Contig868:2247..3045+ (Pylaiella littoralis U1_48)
GTGGATGTCACGGACGCGTCGCCGGTGGTTGCTATCCCGAAAAGTAGGTG
CCAGGGTTTTGGTGGCGGAAGCCTTTGCGAGGTGCAACAGCTGCAACAAC
AAGTGCGAACAGACCGCGACGCGGGCTCTGGGTCGTGTGATGAAAATACC
GTTTCTCGGACC
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