mRNA_P-littoralis_Contig867.9.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig867.9.1
Unique NamemRNA_P-littoralis_Contig867.9.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig867.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig867contigP-littoralis_Contig867:65978..68115 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size182
Hectar predicted targeting categoryother localisation
Exons2
Cds size180
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791740.6442268-CDS-P-littoralis_Contig867:65977..660581680791740.6442268-CDS-P-littoralis_Contig867:65977..66058Pylaiella littoralis U1_48CDSP-littoralis_Contig867 65978..66058 +
1680791740.6550531-CDS-P-littoralis_Contig867:68016..681151680791740.6550531-CDS-P-littoralis_Contig867:68016..68115Pylaiella littoralis U1_48CDSP-littoralis_Contig867 68017..68115 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig867.9.1prot_P-littoralis_Contig867.9.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig867 65978..68115 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig867.9.1

>prot_P-littoralis_Contig867.9.1 ID=prot_P-littoralis_Contig867.9.1|Name=mRNA_P-littoralis_Contig867.9.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=60bp
AEAKPLGSPEHCTSGASSPRFSDGRFATWRRKMCETPPKPERLRLKTCRL
FRRDGCSPR*
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mRNA from alignment at P-littoralis_Contig867:65978..68115+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig867.9.1 ID=mRNA_P-littoralis_Contig867.9.1|Name=mRNA_P-littoralis_Contig867.9.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2138bp|location=Sequence derived from alignment at P-littoralis_Contig867:65978..68115+ (Pylaiella littoralis U1_48)
GCGGAGGCGAAACCTCTTGGGTCACCTGAGCATTGCACCAGTGGAGCCTC
GAGTCCAAGGTTCAGCGACGGAAGGTTCGCGGTGAGTGCAAAAATCGTAT
TTTCTAGGGTCTCACAGGCGGCCCCTTCTGACCCCGGCTTCCGACTACCC
TCTCTAGCACGACAGCGTGCTCCTTCCACAGCGGTGGCAAGTGTAGGCTC
GCCCATCCCAGCCGTTCGCCATACTCATGATCTACTCTCGGGAGCAATCC
GCGTGGGAAACGATCGTGTGTGGGCGAAGATATCAACACATACATGGGCA
CATGTCATATTCGGTTAGGGTTACGCCGCACCAACAGGCGCACGCGGTGC
TGTTTTTTGTTTTTGCTTGTATTTTTTTCGAAAGTATGGGCGACCTGGAG
GTAGGCCCTGATGGGTATAATGCTACTATTAATGTACTATGGAGTATGAC
TACAAATTCGCTATAAATTCGCTACACGTATACGATATATAGTCATACTC
CATAGGTGCCAATGTGTCCCCTCTTGTGCCATCTTGTGCGTAAGAGGGGG
TAGTTGTGAGTGTAGGACCCCGTCGTGCATGCTGGGATTTTTCACTTTAG
GGCGGGCCTTGGACATTTTCTCGTGTATAGCACTGCTGCACTAGTCTAGT
CTTGCTGCGGCAGTTCGGCATCAGAAATTGCCCGTCCGTAGGTAGTCGTG
CCCTCAAAGTTTGCCAATTTTTTTCGTGGGTCCAAATCTCGCAGCAGTAC
AGGACGTAAGGCGGTTTCTTGTAGGGCCGGATTTTTTTTTCATTTTTTGA
TAGAATCCGAACGAACTTTTTCCGGCCAACGGTTGCCGATCCGCTGTTCT
TATAGGTAAATAGGAGTTCGGATTTTCGGTGATCCCTTTTTTTGAGTATG
TGGTTGAAGAGTCGGCTCCAGAGTGTATCTGCATCGAAGGACCGCAGGAT
GGTGTTTTTTGCGCTGAAACCCGTTTGCATCGCCGCTCGTAACTTTCGAA
CGAATGAAGACACAGCAATGACGAAGGCATCTTCCGTGAGCTGTGTATAT
GATCCCCCTCGTGTCGTGATCGCTTGGGTTAGGGTTACATCCGTACATTC
GCAACGTAGGTTTGCTCATGGCCAACTCATGCGAAACAAATTGAGAAAGA
TGTATCAGCCGGACTGCTGTACAGCAGCATTATTATATAGTAGTTGTACA
GCAGTAGAGAAAGGAGATGACAGCTCGTGTTCTTTTTACAACACAACAAC
ATGCCACAGCCACGAGCGATGACCATTTTGCGAACATGCCAGTGTAATCC
TCACCCAAACGATTACCACACGAGGGGAGCCATACGCACAGCTCACGAGA
GATGGGCTTGTCATCGCTGTGGCTTCATTCATTGGGGAGTTACGAGCGAA
GATGCAACTTGTGGTCTCCCTCAGAGGAAGCTTTGATACTCCTCCTCCTG
CTGCTGCTGCTGTGCTGATGATGCTGCTGCTACATACGGTTGGTTTTGGT
TGCTGATGAACACGATGGAATGAACGATGACACGGCAAACGCACGCAGAA
AGATGGTGGACACATGTTATGTATGGACAGCAGCAAGCAGTAGTAGCAGC
AGCTCAGCAGGAGCAGCAGCTGCAACAACACAGAAAGTAGTAGCAGAGCT
CTCCTCCTCTGATGCTCTGTTGTGATTAATATCGTTTGTTTTGTCCACAC
ACAAAGAGAGAGATAACTTCACACATTTTTTTGTAATATATTTTCCGATC
GTATTTTCCGAACCGATCCAGCGTTCGGAAAATGTCCGATTTTCCGAACG
TAATCCGATTAAAAGCTGTTCGGAAAATTTTGTTCGGAAAATGTTGTTCG
GAAAAAGGTGTTTTCCGAGCCTTAAGAAGCCTTGACTCTAAAAAAATTCG
GAATCTATCAAAAAATGAATAAAATATCCGGCCCTGCAAGAAACCGCCTA
AGCCCTGAAAAGACTGGCGTGGTATTGCTTCATCACGAAGGTATACTCAT
TCATGCCTAAATATGTACGTCGAACGTTAGATTGTTCAGACATGGAGACG
GAAGATGTGCGAGACGCCGCCGAAGCCGGAGCGGCTGCGGTTGAAGACAT
GTCGCCTGTTCCGGCGAGACGGATGTTCGCCGAGGTAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig867:65978..68115+

>mRNA_P-littoralis_Contig867.9.1 ID=mRNA_P-littoralis_Contig867.9.1|Name=mRNA_P-littoralis_Contig867.9.1|organism=Pylaiella littoralis U1_48|type=CDS|length=180bp|location=Sequence derived from alignment at P-littoralis_Contig867:65978..68115+ (Pylaiella littoralis U1_48)
GCGGAGGCGAAACCTCTTGGGTCACCTGAGCATTGCACCAGTGGAGCCTC
GAGTCCAAGGTTCAGCGACGGAAGGTTCGCGACATGGAGACGGAAGATGT
GCGAGACGCCGCCGAAGCCGGAGCGGCTGCGGTTGAAGACATGTCGCCTG
TTCCGGCGAGACGGATGTTCGCCGAGGTAA
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