mRNA_P-littoralis_Contig867.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-littoralis_Contig867.1.1
Unique Name	mRNA_P-littoralis_Contig867.1.1
Type	mRNA
Organism	Pylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))

Homology

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BLAST of mRNA_P-littoralis_Contig867.1.1 vs. uniprot
Match: D7FJ68_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ68_ECTSI)

HSP 1 Score: 64.3 bits (155), Expect = 4.420e-10
Identity = 32/67 (47.76%), Postives = 39/67 (58.21%), Query Frame = 2

Query:   14 CDNGVDGVQNSEKTVCCTTSCGYCGGISCSLYSAPDHGAADCCVSHIEDDGDLCSDTRTAPCKMDDV 214
            C NG+ G+Q      CC   CG CGG  C+       GA +CC+S IED G+LCS T TAPC +D V
Sbjct: 2884 CSNGIPGIQTGNA--CCLAECGGCGGTGCAQLGGG-LGADNCCMSEIEDFGELCSATMTAPCIVDSV 2947

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BLAST of mRNA_P-littoralis_Contig867.1.1 vs. uniprot
Match: A0A6H5KHK8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHK8_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 4.040e-7
Identity = 28/65 (43.08%), Postives = 36/65 (55.38%), Query Frame = 2

Query:   14 CDNGVDGVQNSEKTVCCTTSCGYCGGISCSLYSAPDHGAADCCVSHIEDDGDLCSDTRTAPCKMD 208
            CD G+ G+Q S+  VCC+ SCG CGG  C   ++ D G+  CC   +   G  CS T  APC  D
Sbjct:   59 CDGGIVGIQASD--VCCSASCGSCGGSGC---TSRDGGSESCCGGGVRASGRYCSITGEAPCMTD 118

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BLAST of mRNA_P-littoralis_Contig867.1.1 vs. uniprot
Match: A0A6H5JWJ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWJ0_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 5.500e-7
Identity = 29/62 (46.77%), Postives = 35/62 (56.45%), Query Frame = 2

Query:   14 CDNGVDGVQNSEKTVCCTTSCGYCGGISCSLYSAPDHGAADCCVSHIEDDGDLCSDTRTAPC 199
            CD G+ G+Q   K VCC+ SCG CGG+ C   S  D G+  CC   +   G LCS T  APC
Sbjct:  139 CDGGIVGIQ--AKEVCCSASCGSCGGVGC---SGRDGGSDACCGGGVTASGRLCSVTGEAPC 195

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BLAST of mRNA_P-littoralis_Contig867.1.1 vs. uniprot
Match: D7G3U7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3U7_ECTSI)

HSP 1 Score: 55.5 bits (132), Expect = 5.540e-7
Identity = 29/62 (46.77%), Postives = 35/62 (56.45%), Query Frame = 2

Query:   14 CDNGVDGVQNSEKTVCCTTSCGYCGGISCSLYSAPDHGAADCCVSHIEDDGDLCSDTRTAPC 199
            CD G+ G+Q S+  VCC+TSCG CGG  C   S  D G+  CC   +   G  CS T  APC
Sbjct:  270 CDGGIVGIQTSD--VCCSTSCGSCGGTGC---SGRDGGSGACCGGGVRASGRYCSVTGEAPC 326

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BLAST of mRNA_P-littoralis_Contig867.1.1 vs. uniprot
Match: D7G5D5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5D5_ECTSI)

HSP 1 Score: 55.1 bits (131), Expect = 6.410e-7
Identity = 27/67 (40.30%), Postives = 39/67 (58.21%), Query Frame = 2

Query:   14 CDNGVDGVQNSEKTVCCTTSCGYCGGISCSLYSAPDHGAADCCVSHIEDDGDLCSDTRTAPCKMDDV 214
            CD G+ G+Q S+  +CC++SCG CGG  C   ++ D G+  CC   +   G  CS T  APC  ++V
Sbjct:  145 CDGGIVGIQQSD--ICCSSSCGSCGGTGC---TSRDGGSEACCGGGVRASGRYCSVTGEAPCMTNEV 206

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BLAST of mRNA_P-littoralis_Contig867.1.1 vs. uniprot
Match: A0A6H5K5T3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5T3_9PHAE)

HSP 1 Score: 52.0 bits (123), Expect = 6.920e-7
Identity = 27/62 (43.55%), Postives = 35/62 (56.45%), Query Frame = 2

Query:   14 CDNGVDGVQNSEKTVCCTTSCGYCGGISCSLYSAPDHGAADCCVSHIEDDGDLCSDTRTAPC 199
            CD G+ G+Q S+  VCC+ SCG CGG  C   ++ D G+  CC   +   G  CS T  APC
Sbjct:    2 CDGGIVGIQASD--VCCSASCGSCGGSGC---TSRDGGSESCCGGGVRASGRYCSITGEAPC 58

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BLAST of mRNA_P-littoralis_Contig867.1.1 vs. uniprot
Match: D7G4E0_ECTSI (N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4E0_ECTSI)

HSP 1 Score: 54.3 bits (129), Expect = 1.450e-6
Identity = 28/62 (45.16%), Postives = 35/62 (56.45%), Query Frame = 2

Query:   14 CDNGVDGVQNSEKTVCCTTSCGYCGGISCSLYSAPDHGAADCCVSHIEDDGDLCSDTRTAPC 199
            CD G+ G+Q+S+  VCC+ SCG CGG  C   S  D G+  CC   +   G  CS T  APC
Sbjct:  320 CDGGIVGIQSSD--VCCSASCGSCGGSGC---SGRDGGSESCCGGGVRGSGRYCSVTGEAPC 376

[Close]

BLAST of mRNA_P-littoralis_Contig867.1.1 vs. uniprot
Match: A0A6H5JVK3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVK3_9PHAE)

HSP 1 Score: 52.0 bits (123), Expect = 1.690e-6
Identity = 28/62 (45.16%), Postives = 34/62 (54.84%), Query Frame = 2

Query:   14 CDNGVDGVQNSEKTVCCTTSCGYCGGISCSLYSAPDHGAADCCVSHIEDDGDLCSDTRTAPC 199
            CD G+ G+Q S+  VCC+ SCG CGG  C   S  D G+  CC   +   G  CS T  APC
Sbjct:    2 CDGGIVGIQASD--VCCSASCGSCGGSGC---SGRDGGSDACCGGGVRASGRFCSVTGEAPC 58

[Close]

BLAST of mRNA_P-littoralis_Contig867.1.1 vs. uniprot
Match: A0A6H5JVC9_9PHAE (AMOP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVC9_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 1.990e-6
Identity = 28/62 (45.16%), Postives = 35/62 (56.45%), Query Frame = 2

Query:   14 CDNGVDGVQNSEKTVCCTTSCGYCGGISCSLYSAPDHGAADCCVSHIEDDGDLCSDTRTAPC 199
            CD G+ G+Q+S+  VCC+ SCG CGG  C   +  D GA  CC   +   G  CS T  APC
Sbjct:   53 CDGGIVGIQSSD--VCCSLSCGSCGGTGC---TGRDGGADACCGGGVRSSGRFCSVTGEAPC 109

[Close]

BLAST of mRNA_P-littoralis_Contig867.1.1 vs. uniprot
Match: A0A6H5K607_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K607_9PHAE)

HSP 1 Score: 50.1 bits (118), Expect = 2.540e-6
Identity = 26/62 (41.94%), Postives = 34/62 (54.84%), Query Frame = 2

Query:   14 CDNGVDGVQNSEKTVCCTTSCGYCGGISCSLYSAPDHGAADCCVSHIEDDGDLCSDTRTAPC 199
            CD  + G+Q+S+  VCC+ SCG CGG  C   +  D G+  CC   +   G  CS T  APC
Sbjct:    2 CDGDIVGIQSSD--VCCSASCGSCGGSGC---TGRDGGSESCCGGGVRASGRYCSITGEAPC 58

The following BLAST results are available for this feature:

BLAST of mRNA_P-littoralis_Contig867.1.1 vs. uniprot

BLAST of mRNA_P-littoralis_Contig867.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15


Match Name	E-value	Identity	Description
D7FJ68_ECTSI	4.420e-10	47.76	WSC domain-containing protein n=1 Tax=Ectocarpus s...	[more]
A0A6H5KHK8_9PHAE	4.040e-7	43.08	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JWJ0_9PHAE	5.500e-7	46.77	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7G3U7_ECTSI	5.540e-7	46.77	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
D7G5D5_ECTSI	6.410e-7	40.30	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5K5T3_9PHAE	6.920e-7	43.55	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7G4E0_ECTSI	1.450e-6	45.16	N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepI...	[more]
A0A6H5JVK3_9PHAE	1.690e-6	45.16	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JVC9_9PHAE	1.990e-6	45.16	AMOP domain-containing protein n=1 Tax=Ectocarpus ...	[more]
A0A6H5K607_9PHAE	2.540e-6	41.94	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-littoralis_Contig867	contig	P-littoralis_Contig867:342..1172 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Pylaiella littoralis U1_48 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	1
Start	1
Model size	259
Hectar predicted targeting category	signal peptide
Exons	2
Cds size	225

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680791740.4952896-UTR-P-littoralis_Contig867:341..346	1680791740.4952896-UTR-P-littoralis_Contig867:341..346	Pylaiella littoralis U1_48	UTR	P-littoralis_Contig867 342..346 -
1680791740.5348666-UTR-P-littoralis_Contig867:1143..1172	1680791740.5348666-UTR-P-littoralis_Contig867:1143..1172	Pylaiella littoralis U1_48	UTR	P-littoralis_Contig867 1144..1172 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680791740.5093427-CDS-P-littoralis_Contig867:346..450	1680791740.5093427-CDS-P-littoralis_Contig867:346..450	Pylaiella littoralis U1_48	CDS	P-littoralis_Contig867 347..450 -
1680791740.5215158-CDS-P-littoralis_Contig867:1022..1143	1680791740.5215158-CDS-P-littoralis_Contig867:1022..1143	Pylaiella littoralis U1_48	CDS	P-littoralis_Contig867 1023..1143 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-littoralis_Contig867.1.1	prot_P-littoralis_Contig867.1.1	Pylaiella littoralis U1_48	polypeptide	P-littoralis_Contig867 347..1143 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-littoralis_Contig867:342..1172-
coding sequence from alignment at P-littoralis_Contig867:342..1172-

protein sequence of mRNA_P-littoralis_Contig867.1.1

>prot_P-littoralis_Contig867.1.1 ID=prot_P-littoralis_Contig867.1.1|Name=mRNA_P-littoralis_Contig867.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=75bp
MACRTPRRLCVAQPLVGIAVVSPAPFTVPQIMAPPTAALATSKMTGTCAP
TPGLPPAKWTMYDGYTIWHGERRG*

mRNA from alignment at P-littoralis_Contig867:342..1172-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-littoralis_Contig867.1.1 ID=mRNA_P-littoralis_Contig867.1.1|Name=mRNA_P-littoralis_Contig867.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=831bp|location=Sequence derived from alignment at P-littoralis_Contig867:342..1172- (Pylaiella littoralis U1_48)
AGGGAGCGTGTCATGTGATAACGGCGTCGATGGCGTGCAGAACTCCGAGA
AGACTGTGTGTTGCACAACCTCTTGTGGGTATTGCGGTGGTATCTCCTGC
TCCCTTTACAGTGCCCCAGATCATGGCGCCGCCGACTGCTGCGTTAGCCA
GTGAGTTCACACCGTGCCGACGTGACTAGACATGCCGGGGATCATCGAGA
TAACGTTTCCCGCCCACCCCGGTTTCTTTCTACGATAGCCCCACCACAAT
GTATTCACCAAAAATCGCCGGTTTCGAATACCGCTCCTGGCCCTCCAACC
TGAAGTACAGCGTCTCTTGTCCTGTCGACTTTATTTTTTGATAGCCGTTG
GCATACAAACAACTGATATATACTCCGGAGTACCAGGTATATTTTTTTCA
TAGCCCCATTCCTCGTCTCAAAAAGCCATGATACGTAGGTTGAAAAAAAT
CGCGGTGGGGGGGGCCATTCTCGTAGAACGACTCCCAGGTGAATCTCGGT
ACTAGCGTTAGAACGAAGACTTTTGAAACGGTTTCCATGCCCCTCGTTGA
TGCTTTCAAAAGCCTCCTGCATCAAGTGTATTCATCGGTATAACGAAGAG
TGTGAAAACGTTTTCTATGCCCCCTCGTGTTGACTTTTATGAGCTGTAAA
GTGTAGCGCATTCAATGGTTTAACACGTCTCAAATTCCTCCCTCCCTCTT
TCTGATTGACAACCAACCAAAGCATCGAAGATGACGGGGACCTGTGCTCC
GACACCAGGACTGCCCCCTGCAAAATGGACGATGTATGATGGGTATACTA
TCTGGCACGGTGAACGAAGAGGTTAAAGCGC

Coding sequence (CDS) from alignment at P-littoralis_Contig867:342..1172-

>mRNA_P-littoralis_Contig867.1.1 ID=mRNA_P-littoralis_Contig867.1.1|Name=mRNA_P-littoralis_Contig867.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=225bp|location=Sequence derived from alignment at P-littoralis_Contig867:342..1172- (Pylaiella littoralis U1_48)
ATGGCGTGCAGAACTCCGAGAAGACTGTGTGTTGCACAACCTCTTGTGGG
TATTGCGGTGGTATCTCCTGCTCCCTTTACAGTGCCCCAGATCATGGCGC
CGCCGACTGCTGCGTTAGCCACATCGAAGATGACGGGGACCTGTGCTCCG
ACACCAGGACTGCCCCCTGCAAAATGGACGATGTATGATGGGTATACTAT
CTGGCACGGTGAACGAAGAGGTTAA