mRNA_P-littoralis_Contig863.14.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig863.14.1
Unique NamemRNA_P-littoralis_Contig863.14.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig863.14.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig863contigP-littoralis_Contig863:48222..49986 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size817
Hectar predicted targeting categoryother localisation
Exons2
Cds size459
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791737.9260561-UTR-P-littoralis_Contig863:48221..485761680791737.9260561-UTR-P-littoralis_Contig863:48221..48576Pylaiella littoralis U1_48UTRP-littoralis_Contig863 48222..48576 -
1680791737.9422305-UTR-P-littoralis_Contig863:49526..495271680791737.9422305-UTR-P-littoralis_Contig863:49526..49527Pylaiella littoralis U1_48UTRP-littoralis_Contig863 49527..49527 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791737.9556391-CDS-P-littoralis_Contig863:49527..499861680791737.9556391-CDS-P-littoralis_Contig863:49527..49986Pylaiella littoralis U1_48CDSP-littoralis_Contig863 49528..49986 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig863.14.1prot_P-littoralis_Contig863.14.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig863 49528..49986 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig863.14.1

>prot_P-littoralis_Contig863.14.1 ID=prot_P-littoralis_Contig863.14.1|Name=mRNA_P-littoralis_Contig863.14.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=153bp
NLYDSNTNCLDPTLLLESLSSPGEFSKHACGLPSDVQPLCGTHRTYVWKK
GGCCVAHHIMYVLTCRSSSCMYYCMSCTRLCTAVSVGTSKKVYGQIKRIA
LSSRYHLFLHAVIRPCASPRKKAEGQKNREHKKEKLRSTKVRRNSVHHIK
GK*
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mRNA from alignment at P-littoralis_Contig863:48222..49986-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig863.14.1 ID=mRNA_P-littoralis_Contig863.14.1|Name=mRNA_P-littoralis_Contig863.14.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1765bp|location=Sequence derived from alignment at P-littoralis_Contig863:48222..49986- (Pylaiella littoralis U1_48)
AACCTCTACGACAGTAATACAAACTGCCTAGACCCAACCCTCCTTTTGGA
GTCACTCTCGTCGCCCGGCGAGTTCTCTAAGCATGCTTGCGGGCTTCCCT
CCGATGTACAGCCGCTGTGCGGAACACATCGGACGTACGTGTGGAAAAAA
GGTGGTTGTTGCGTTGCTCATCATATCATGTACGTACTTACTTGTCGCTC
ATCATCATGTATGTACTACTGTATGTCATGTACTCGGTTGTGCACAGCAG
TTAGTGTCGGCACATCTAAGAAAGTTTATGGCCAAATAAAACGCATCGCT
CTCTCCTCCCGATATCATTTATTCTTGCATGCCGTAATTCGCCCTTGCGC
CTCCCCGCGCAAAAAGGCCGAAGGGCAGAAAAACAGAGAACACAAAAAAG
AAAAACTTCGAAGTACAAAAGTACGTCGTAACTCAGTCCACCATATCAAA
GGAAAATGAAGTGAGGGATGATAAATAATACCGCAACAACAGCAGCAGCA
CATGCGAACACCAACCTTTACCACAGTAATACAAACTGCCTAGACCCAAC
CCTCCTTTTGGAGTCACTCTCTTGTCGCCCGGCTAGTTCTCTAAGCATGC
TTGCGGGCTTCCCTCTGATGTACAGCCGCTGTGGGGAACAACAGCCGACG
TACGTGTGGAAAAAAGTGGTACAGGCAGAAGAATTTTTCCAACATACCCC
GCCGTGGATGACACGTCATGTCGAACAGGGATTTACGACCAAAGGAAATT
TCCTGTCAAAAACATTGGCCAATCAGAAAACTGCGGGCACCTTTTCTCTA
TGTCAGCCCCCCCCCTTTATAGACCCCCCGGGGGTCACCTTTTCGGCCTG
GAAGCATGATGTCGTTGTCGTAGCCCTGGGGGGATCGGGTTTTTCGGGGA
AAAAAAAAGATCCCCCCCCCTTCATCATCTCCCCCCGGGGTTTGAGTTTT
TTTTTGTGTGTGAGATCCCCCCGGGGTGGTGCGAATTTCCCCACATTCGC
GGTCAGAACAGGGGCAAGAAGCATCCACCGCAATGAAATGCCATCAGGGC
AAAGCCTGTAATGAAGGAATGCAACGAGACAGGTGAGATAGGTAATTGTA
TACATAGTCACTTCTAAATACGGTAATACTTGAACAACCCACCGTCCACA
GCCCGACAAGCAAATTGAAGAAACGTGCCATACTGGAAGGTGTGTGTGTG
TACGAGGGCAGGCTGTGTGGGTGATTTTTCTGCTTCCCCCCGGGGTATTT
CCCCCCCCCGGGTACCGTTGACAAAAATACAAAAGATCCCCCCCCTGTTG
TCATCTCCCCCCCGGGGAGAGTGATTTGACAAAAAAAAAAAACTCCCCTC
CCTCGGCCCTGACAACGCAGATTACGGTAACTTAGTCCACCATATCAAAG
GAAAATGAAGTCAGGGATGAGAAATAATACCGCAACAACAGCAGCAGCAC
ATGCGAACACCAACCTCTACGACAGTAATACAAACTGCCTAGACCCAACC
CTCCTTTTGGAGTCACTCTCTCGTCGCCCGGCGAGTTCTCTAAGCATGCT
TGCGGGCTTCCCTCCGATGTACAGCCGCTGTGCGGAACACATCGGACGTA
CGTGTGGAAAAAAGGTGGTTGTTGCGTTGCTCATCATATCATGTACGTAC
TTACTTGTCGCTCATCATCATGTATGTACTACTGTATGTCATGTACTCGG
TTGTGCACAGCAGTTAGTGTCGGCACATCTAAGAAAGTTTATGGCCAAAT
AAAACGCATCGCTCT
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Coding sequence (CDS) from alignment at P-littoralis_Contig863:48222..49986-

>mRNA_P-littoralis_Contig863.14.1 ID=mRNA_P-littoralis_Contig863.14.1|Name=mRNA_P-littoralis_Contig863.14.1|organism=Pylaiella littoralis U1_48|type=CDS|length=459bp|location=Sequence derived from alignment at P-littoralis_Contig863:48222..49986- (Pylaiella littoralis U1_48)
AACCTCTACGACAGTAATACAAACTGCCTAGACCCAACCCTCCTTTTGGA
GTCACTCTCGTCGCCCGGCGAGTTCTCTAAGCATGCTTGCGGGCTTCCCT
CCGATGTACAGCCGCTGTGCGGAACACATCGGACGTACGTGTGGAAAAAA
GGTGGTTGTTGCGTTGCTCATCATATCATGTACGTACTTACTTGTCGCTC
ATCATCATGTATGTACTACTGTATGTCATGTACTCGGTTGTGCACAGCAG
TTAGTGTCGGCACATCTAAGAAAGTTTATGGCCAAATAAAACGCATCGCT
CTCTCCTCCCGATATCATTTATTCTTGCATGCCGTAATTCGCCCTTGCGC
CTCCCCGCGCAAAAAGGCCGAAGGGCAGAAAAACAGAGAACACAAAAAAG
AAAAACTTCGAAGTACAAAAGTACGTCGTAACTCAGTCCACCATATCAAA
GGAAAATGA
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