mRNA_P-littoralis_Contig86.9.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig86.9.1
Unique NamemRNA_P-littoralis_Contig86.9.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig86.9.1 vs. uniprot
Match: D8LTE8_ECTSI (2Fe-2S ferredoxin-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTE8_ECTSI)

HSP 1 Score: 135 bits (340), Expect = 6.030e-38
Identity = 67/72 (93.06%), Postives = 70/72 (97.22%), Query Frame = 1 
Query:    4 ADVVVEFTTSKKTVNAVVGSPLSTLCAKNGIKVKYNCKQGDCATCSINIDGRNVKACQGKVPASRRIVKIKA 219
            A+VVVEFT SKKTVNAVVGSPLS LCAKNGIKVKY+CKQGDCATCSINIDGRNVKACQG+VPASRRIVKIKA
Sbjct:    2 ANVVVEFTNSKKTVNAVVGSPLSQLCAKNGIKVKYSCKQGDCATCSINIDGRNVKACQGRVPASRRIVKIKA 73
[Close]
BLAST of mRNA_P-littoralis_Contig86.9.1 vs. uniprot
Match: A0A835Z7N4_9STRA (2Fe-2S ferredoxin-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7N4_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 6.620e-14
Identity = 38/68 (55.88%), Postives = 48/68 (70.59%), Query Frame = 1 
Query:   16 VEFTTSKKTVNAVVGSPLSTLCAKNGIKVKYNCKQGDCATCSINIDGRNVKACQGKV-PASRRIVKIK 216
            V FT S K + A  G+ LS + AK G+KV+YNCK G CATC +N+DGR  KAC  K+ P +RR+VKIK
Sbjct:   50 VHFTVSDKKITAEGGTLLSQVAAKAGVKVRYNCKAGTCATCVLNVDGRMQKACVTKLDPFTRRVVKIK 117
[Close]
BLAST of mRNA_P-littoralis_Contig86.9.1 vs. uniprot
Match: A0A7S2SLY0_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2SLY0_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 3.570e-11
Identity = 28/67 (41.79%), Postives = 46/67 (68.66%), Query Frame = 1 
Query:   19 EFTTSKKTVNAVVGSPLSTLCAKNGIKVKYNCKQGDCATCSINIDGRNVKACQGKVPASRRIVKIKA 219
            + T + K +    GSP+ + CAK G+K +Y+CK+GDCA+C+I++ G  +K C GKVP + R+  ++A
Sbjct:   42 KLTYNGKAIEFKEGSPMKSACAKLGMKPRYSCKKGDCASCTISVGGTRIKPCVGKVPPAPRLKSLQA 108
[Close]
BLAST of mRNA_P-littoralis_Contig86.9.1 vs. uniprot
Match: A0A7S2D671_9STRA (Hypothetical protein n=2 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D671_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 1.090e-10
Identity = 27/59 (45.76%), Postives = 40/59 (67.80%), Query Frame = 1 
Query:   37 KTVNAVVGSPLSTLCAKNGIKVKYNCKQGDCATCSINIDGRNVKACQGKVPASRRIVKI 213
            K ++   GS +   C K GIKV  NCK+GDC TC++N+ G+N+KAC GKVP + ++  +
Sbjct:   65 KKISVPEGSSMMAACKKLGIKVPTNCKKGDCGTCTVNVGGKNIKACVGKVPPAPKLKSV 123
[Close]
BLAST of mRNA_P-littoralis_Contig86.9.1 vs. uniprot
Match: A0A7S3NPX4_9STRA (Hypothetical protein n=2 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NPX4_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 1.340e-9
Identity = 26/59 (44.07%), Postives = 39/59 (66.10%), Query Frame = 1 
Query:   37 KTVNAVVGSPLSTLCAKNGIKVKYNCKQGDCATCSINIDGRNVKACQGKVPASRRIVKI 213
            K +    GS L   C+K GIKV YNCK+GDC TCS+++ G+ ++AC  KVP + ++  +
Sbjct:   43 KKITVPEGSNLGAACSKLGIKVPYNCKKGDCGTCSVSVGGKILRACTAKVPPAPKLKSV 101
[Close]
BLAST of mRNA_P-littoralis_Contig86.9.1 vs. uniprot
Match: A0A7S0B0B1_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0B0B1_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 1.710e-9
Identity = 28/59 (47.46%), Postives = 38/59 (64.41%), Query Frame = 1 
Query:   37 KTVNAVVGSPLSTLCAKNGIKVKYNCKQGDCATCSINIDGRNVKACQGKVPASRRIVKI 213
            K VNAVVG  +S + A   +K+ Y+CK GDC TC + I+GRN KACQ  VP  +  + +
Sbjct:   94 KPVNAVVGQKISQVAASARVKIPYSCKNGDCGTCVVKINGRNQKACQATVPNGKCQISV 152
[Close]
BLAST of mRNA_P-littoralis_Contig86.9.1 vs. uniprot
Match: A0A7S2U7E3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U7E3_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 7.250e-9
Identity = 26/58 (44.83%), Postives = 38/58 (65.52%), Query Frame = 1 
Query:   19 EFTTSKKTVNAVVGSPLSTLCAKNGIKVKYNCKQGDCATCSINIDGRNVKACQGKVPA 192
            + T + K+V A+VG  +S + A   +K+ YNCK GDC TC I ++GR  KACQ  +P+
Sbjct:   83 KVTINGKSVKAIVGQKVSVVAAAARVKIPYNCKNGDCGTCMIKVNGRKAKACQMNIPS 140
[Close]
BLAST of mRNA_P-littoralis_Contig86.9.1 vs. uniprot
Match: A0A7R9VKD2_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VKD2_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 1.230e-8
Identity = 25/52 (48.08%), Postives = 36/52 (69.23%), Query Frame = 1 
Query:   37 KTVNAVVGSPLSTLCAKNGIKVKYNCKQGDCATCSINIDGRNVKACQGKVPA 192
            K V+AVVG  +S + A   +K+ YNC+ GDC TC++ ++ R VKACQ  +PA
Sbjct:   78 KAVSAVVGQKVSVVAAAARVKIPYNCRNGDCGTCTVKMNNRKVKACQATIPA 129
[Close]
BLAST of mRNA_P-littoralis_Contig86.9.1 vs. uniprot
Match: A0A8J5X503_DIALT (2Fe-2S ferredoxin-type domain-containing protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5X503_DIALT)

HSP 1 Score: 62.0 bits (149), Expect = 1.700e-8
Identity = 26/51 (50.98%), Postives = 37/51 (72.55%), Query Frame = 1 
Query:   37 KTVNAVVGSPLSTLCAKNGIKVKYNCKQGDCATCSINIDGRNVKACQGKVP 189
            +TVNAV G  LS +    G K++Y+CK GDC TC++ ++GR+V+AC  KVP
Sbjct:   79 RTVNAVPGQGLSDVARAAGSKIQYDCKNGDCGTCTVKLNGRSVRACVAKVP 129
[Close]
BLAST of mRNA_P-littoralis_Contig86.9.1 vs. uniprot
Match: A0A7S2USA5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2USA5_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 5.020e-8
Identity = 28/71 (39.44%), Postives = 42/71 (59.15%), Query Frame = 1 
Query:    1 QADVVVEFTTSKKTVNAVVGSPLSTLCAKNGIKVKYNCKQGDCATCSINIDGRNVKACQGKVPASRRIVKI 213
            + DV V F   KK V A  G P+  +  + G K+KY+C++G+CA CS+ +DG   K C   VP  ++ V+I
Sbjct:   85 KGDVEVNFVRQKKIVKASAGEPMREVAKRAGAKIKYSCEKGNCAVCSVWMDGCERKVCVATVPKGQKKVEI 155
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig86.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
D8LTE8_ECTSI6.030e-3893.062Fe-2S ferredoxin-type domain-containing protein n... [more]
A0A835Z7N4_9STRA6.620e-1455.882Fe-2S ferredoxin-type domain-containing protein n... [more]
A0A7S2SLY0_9STRA3.570e-1141.79Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7S2D671_9STRA1.090e-1045.76Hypothetical protein n=2 Tax=Florenciella parvula ... [more]
A0A7S3NPX4_9STRA1.340e-944.07Hypothetical protein n=2 Tax=Aureoumbra lagunensis... [more]
A0A7S0B0B1_9STRA1.710e-947.46Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A7S2U7E3_9STRA7.250e-944.83Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
A0A7R9VKD2_9STRA1.230e-848.08Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A8J5X503_DIALT1.700e-850.982Fe-2S ferredoxin-type domain-containing protein n... [more]
A0A7S2USA5_9STRA5.020e-839.44Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig86contigP-littoralis_Contig86:24491..25744 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog35128.Thaps22712
PFAMsFer2
Model size652
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categoryother localisation
Exons2
Evalue5.28e-09
EggNOG OGs2EAS1@1|root,2SGYY@2759|Eukaryota,2XDS1@2836|Bacillariophyta
Ec32 ortholog descriptionBeta-grasp domain
Ec32 orthologEc-02_006080.1
Description2Fe-2S iron-sulfur cluster binding domain
Cds size222
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791729.6214607-UTR-P-littoralis_Contig86:24490..249201680791729.6214607-UTR-P-littoralis_Contig86:24490..24920Pylaiella littoralis U1_48UTRP-littoralis_Contig86 24491..24920 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791729.6368382-CDS-P-littoralis_Contig86:24920..250431680791729.6368382-CDS-P-littoralis_Contig86:24920..25043Pylaiella littoralis U1_48CDSP-littoralis_Contig86 24921..25043 -
1680791729.6471589-CDS-P-littoralis_Contig86:25645..257441680791729.6471589-CDS-P-littoralis_Contig86:25645..25744Pylaiella littoralis U1_48CDSP-littoralis_Contig86 25646..25744 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig86.9.1prot_P-littoralis_Contig86.9.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig86 24921..25744 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig86.9.1

>prot_P-littoralis_Contig86.9.1 ID=prot_P-littoralis_Contig86.9.1|Name=mRNA_P-littoralis_Contig86.9.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=74bp
QADVVVEFTTSKKTVNAVVGSPLSTLCAKNGIKVKYNCKQGDCATCSINI
DGRNVKACQGKVPASRRIVKIKA*
back to top

mRNA from alignment at P-littoralis_Contig86:24491..25744-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig86.9.1 ID=mRNA_P-littoralis_Contig86.9.1|Name=mRNA_P-littoralis_Contig86.9.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1254bp|location=Sequence derived from alignment at P-littoralis_Contig86:24491..25744- (Pylaiella littoralis U1_48)
CAGGCAGACGTGGTGGTTGAGTTCACGACAAGCAAAAAGACGGTCAACGC
CGTCGTGGGCTCGCCTCTGTCGACATTGTGCGCCAAAAACGGTATCAAGG
TGAGCTCTGACAGAGTCTCGCTTCTGCTATCTGTTGTACATTTCGTTCGG
TGCTCAGGTAAGACTATGCCATCCTGGATTGGAGTGACTGGCGTTTGCAG
CAAAACGTGAACGTCTTCAGCCCGCCGTATACTGGTGCTTCAGGTAGTTG
GTAGTTGACGGTAGTTGGTCGTGTGCTTTTGTTGTCTCCGTCCTCTACTA
AATACAAAACCGCGGGCACCTTTTCTCTCTCTCTCGTAAATATGCTCCTG
CTTGATCGTATCTGCAGCAGCCGGAGCCGGTCTTCTTGCACGTCTGATAT
GCCTTGTTGATGCTCACCCGATGGTTCAAATACCATATATGCGAAACTAT
CACGGTGTTGATGCGTGTCCGGCCGTTATCCGACAGCGCAAATGCCATAC
ATGCACCACTGCTTTCCCACCTTAGCAACGCCTTGTCGGTGGCCGAATAG
CCCGTCCCACAATCATGTCACCGGGCTCTCTCTCTCTCTCTCTCTCTCTT
CTCTCTCCTGTAAATCTGACATGCGGTCGTGTCTCGTCGCGCACATACAT
GCATGCGGTGCGGGTAATGATCCGATGCGCCACCGCCGAACGTTTTTTCA
GGTCAAATATAACTGCAAACAGGGGGACTGCGCGACGTGTTCGATCAACA
TCGACGGGAGAAACGTCAAGGCCTGCCAGGGAAAGGTACCGGCGTCTCGC
CGCATCGTCAAGATCAAGGCGTGAGAGCTGACTGACCTTCAAAGCTCACA
GCTGAGACGGGGCGATCGGCGGTGATGAAGGATAGAGCGTGCAGGGGATC
ATGCACTGGCGCCTTCGTCGCACGGACGGAGTTCATCGGGGGGGTGTAGA
GGATTAGGGCACCACTGCTGCTGCAAAATGTCACGAGTGCCGTTGTGTAT
AGCACGTTGTCTACCGTAGAGAGCAAGAGGTGCCAGTGAGGATTTGGGGG
AAACGCGTCAAAATATTTTACTTCGTATGATATTTTGGGTCGCAGGGGTT
TTATGGTCAGCCGCCCACATCTAGCGAAAAGGTGTGGTGTAGAATGGCGC
CAAGAATAGATGGGATGCCAACACACACGAACAAAAGCTGTGGAATCAGT
AACTGTTTTTACGTACTTGTTTTGTATTTTCGGTGAACGCGGAGGTCAGG
GCGA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig86:24491..25744-

>mRNA_P-littoralis_Contig86.9.1 ID=mRNA_P-littoralis_Contig86.9.1|Name=mRNA_P-littoralis_Contig86.9.1|organism=Pylaiella littoralis U1_48|type=CDS|length=222bp|location=Sequence derived from alignment at P-littoralis_Contig86:24491..25744- (Pylaiella littoralis U1_48)
CAGGCAGACGTGGTGGTTGAGTTCACGACAAGCAAAAAGACGGTCAACGC
CGTCGTGGGCTCGCCTCTGTCGACATTGTGCGCCAAAAACGGTATCAAGG
TCAAATATAACTGCAAACAGGGGGACTGCGCGACGTGTTCGATCAACATC
GACGGGAGAAACGTCAAGGCCTGCCAGGGAAAGGTACCGGCGTCTCGCCG
CATCGTCAAGATCAAGGCGTGA
back to top