mRNA_P-littoralis_Contig86.66.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig86.66.1
Unique NamemRNA_P-littoralis_Contig86.66.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig86.66.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig86contigP-littoralis_Contig86:197685..204298 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1924
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionG-protein gamma-like domain
Ec32 orthologEc-02_005920.1
Cds size216
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791731.7685401-UTR-P-littoralis_Contig86:197684..1989871680791731.7685401-UTR-P-littoralis_Contig86:197684..198987Pylaiella littoralis U1_48UTRP-littoralis_Contig86 197685..198987 -
1680791731.8060985-UTR-P-littoralis_Contig86:200297..2003441680791731.8060985-UTR-P-littoralis_Contig86:200297..200344Pylaiella littoralis U1_48UTRP-littoralis_Contig86 200298..200344 -
1680791731.8160295-UTR-P-littoralis_Contig86:203940..2042981680791731.8160295-UTR-P-littoralis_Contig86:203940..204298Pylaiella littoralis U1_48UTRP-littoralis_Contig86 203941..204298 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791731.783303-CDS-P-littoralis_Contig86:198987..1991221680791731.783303-CDS-P-littoralis_Contig86:198987..199122Pylaiella littoralis U1_48CDSP-littoralis_Contig86 198988..199122 -
1680791731.7937732-CDS-P-littoralis_Contig86:200216..2002971680791731.7937732-CDS-P-littoralis_Contig86:200216..200297Pylaiella littoralis U1_48CDSP-littoralis_Contig86 200217..200297 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig86.66.1prot_P-littoralis_Contig86.66.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig86 198988..200297 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig86.66.1

>prot_P-littoralis_Contig86.66.1 ID=prot_P-littoralis_Contig86.66.1|Name=mRNA_P-littoralis_Contig86.66.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=72bp
MSETTLQKVEVEVQKLTAELESLERAQMYSAAFNNLLGYVSETPEPFSSA
PPEPNSWHANVGSAGPCCSVS*
back to top

mRNA from alignment at P-littoralis_Contig86:197685..204298-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig86.66.1 ID=mRNA_P-littoralis_Contig86.66.1|Name=mRNA_P-littoralis_Contig86.66.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=6614bp|location=Sequence derived from alignment at P-littoralis_Contig86:197685..204298- (Pylaiella littoralis U1_48)
GTCGTGAGGCAACGTGCGCGCGTGCGTCTGTAAATGTATTCTGCGTTTGC
GTCTACACGCCAACACCCAGGCAGGCGGAAAAGGGTAAGGTCGCCGCCGG
TCCGTCGGTGACTCTGTAACCGCTGGGACTTTAAACCGCTGGGACTTTAT
GTAGCGTCGCAGGCATTTATTTTTTTTTGTCTTTCTCTCTCTAGCCATCT
CTCTCTTTCTCTTCCTCTTTTTCTCGGATTTAAACAGACAGAGAGACACC
CGCGCACACACACAAATCTAGACGACCAAAATTTTCGGCAAGGAGCGCGG
GAGAGCTCTCATTTGGCGATACAGAGGCGTGGAGAAGGGACATCTGGCGC
AGACTCAGGTACGCCGGTATACAGCAGGGACATGCGAGATCTTGAATGGC
TGCAATCCCAGCGTCGGAGTAGTGATTTGCCTGTCACCTGGTGTCTATTA
TGCGAAGCCTATTCTCCACCCTCATCGCTCCATCGAGGAGGACATCCCCC
GCCAGGAAGCAGCAGCACTACTAGCCAGCTCCAAGCGGACAGCCGCGCAC
AGGTCCGATTTTCACTGGCAGTAGATATGTGCTGCAGTTTTCATGCAACG
GCTTCCATTGCTTCGCGTGTTGTTGGCGAGGTTTCAGTCGGGCAATTGCG
GGTCGTCTAAATACAACACGTCTGTCGTAGTTGTGTTTGGTCTCGACTCT
CAATTTGCGTCTGTGCGTTAGTGTGCAGCCCGAGGTGTTTGTCCAATCGT
TCGGTTGGGCGCTACCGTTTGAACCAGCATCAACACACGCCCCGCTTTGA
GCTCGGCAGGATGCTTATCGCAGCTGTCGGTGTAAGACCTATGACCTTCA
CCTACCTGTCGATGCATTCACCTTCATCAATCCTGGTATGGTGGTACTCG
TAGTCGGTGCCGGCCTACGGGGGCCCTTGTTGAGAGGTGACTGATGAACT
GGTGGAACGTTTCAGGAGCGATGAAACACAGCACCAGTAAGTAGCGTGTG
TGCGTGCCTTGATTCTTTCGTCTTTCCGGCATCGCTCCTTTCGACTCTCA
TCCCTCATCCCTCTTTCAGCTATAGCTAGCCTCCTTTTTTCCTTTTGCGG
CAGGTCAAGGTTTTCGTCCATGTGACAGAGCGTCCGCGCTGTGATTCCTC
TTTCTTTTCAAAACGAAATAATCCAGCACCTTGGTTTTACATTTCACCTG
ACAAATACTTGCATGCGGGACGGGATCGTTTGTTCATCTGATTTTATTCT
CGATGGCGGTCCCCGTGTCTGTCCCTTTATTACCTTCCTCTGCTGTCTCG
ATGTGTCGATACACAGCAGGAACCGAGAGCAGATGTAATAAGATGAAATT
ATTCCAAACCGCATCATTGCCTACTCTTGTATCAACTAAGTATTTCATGT
AGGTGGCCGAACACCGTCGGAGATCATCACCGATGACCCCGGTGTTGATA
ATAGCGTGTACTGCGCATGTATGATAGCAGCAGCAACAGTAGTACCCACC
CCGACCCACGCCGTCCCCCCTATATTGCCAACAACACGTTCCTAACTAAC
GCACCACACACCCCAGTTTGTGCATATTGTCTACTTCGCAGTTGTCTCGA
GTGGCTCGAATTTTGCTTAATTCAAACACTGGCCTATTTATTCCTTGGAA
AATATCGAATAAAGGGAATAAACTTCGACGAACGCACACACACATCACAA
AATGGAACTAGATTCCTTGGCAAGGCATCTCAAAGCAACGATCACAACGT
CTGTCGGCTAGGACTCCATCTGAACGTATACTTCAAATCGAAATTCACAG
CAACTACTGCTGTGGGTGATCTCCGGTGTTCAATTTCTTTCTTTCGGGAC
AACATAATCGGCAAGTTTGCGGAAATTCCACCGCGGGTGTGTTGTTGTTG
TTGATTCTCACATTAGCTCACTGCCGCCGCAGTCTAGGCCGTGTTCACAA
ACCAGCCACATATCGTGCTAGGAGAAAAAAAAGAGAAAATAAATTGACTA
TCATCACCCACAGTCAAATCAGATAGAGTACGGTTGGGGTACTGTATCAT
CTGTAGTGTCCAAAGCACCAAACAAAGTACAGAAAAAAATAATAGGTTCG
AAAGAAAAAACAAAAATTGGAAAAAATGTATCGTGTGTCACACGAGACGA
CTACCAAATTGTCTTGTTGAGCCTGATAGCCTCAGGGGAGCTGCAACGGT
ATCTCATCTGTTGAGTTGTAGAAACACAAGTAGATTTATTGCTGGATCCT
CGTCTAGGGAGAGGCGAACACACTGATCTCTTGGTAAAAAAAATAAAAAT
CAGTACAAACAAGAGTGTGTCTGCCGTGGTATCTGGGCCAGTACATCTCA
CCCAACAACTGCTGTGTACCCTATTGTACTTGTTATGAGTATCTCCTTGA
AGGGAGTGGCGAACGCATTGATGTACCTACGATAAGAAAATTATTTCCCT
TCCAAGAGAAAAGAGAAACGTTTTCTCTGAATAAGTTCGGGATTCGTTGG
CCAAGCAGGTCGACCAGGTTTTCCTCGCATTGACAAGACAACTCTGTGTC
ATATCATGGGTGTGTCGATTGAAAGGCCGCCGGAGTACAGTAGTACTATC
TACTCCGTACTCCGGAGTACTTCGAAGTATTATCGTACACATCACACGTC
CAAGTACTGCTGTACTGCTGCTGCACGAACACGAGGCATATTCTTCGTAC
TTCGAAGTATTGAGAGAAAGTCGACGAAGGAGCGCCAAAATGAAACTCAG
GAGGAACGCAGACTTGAGAATGGGGCTCAAGGAAGAGTGCTGCAGTCAGT
ATCAAATCATGTGTCATCGATGATATCTAGGGAGTAGACCGAATCACCAT
CGAACCGTCGCTCTTCCCTTTCCGTACTGAATTCTTCTTTCTTCGGCATT
TTTTTCTTCAGAGAAGAAAAGAAAGAAGCCTTTCGAGATCGAGAGGAATT
TTGAGCATCCACCATCTCCCCCGGAGTCACTTAATACTTTATACTCAGTC
CGGTGTGTTGTTGTCCTTACAGATTTTTTCTCGGAGTACATGCTAGGGTT
AACCAAGCCGGCCGGAAGGACATTGTGCGTGATATATCTGAAAAGGGTCG
AAGAATTATATATCTGACAAGGGCGGAAGAATTACTGCTACTGGTGACAT
AAATACATGAAGGGCATTAGCAGTACAAGTGGTGGGAGGTAGGAAGCACA
AGAAACACAGAGATCAATCGTCCGCAAATTCGAAATCGTCAAGTGTTCAG
ATGAGAACATCCAATCGTTGTTTTGACCATGTTTTGAACCATGCTCCCTC
TTTTGTTCCATTTTTGTAGCGTTGTGTGATCTTTCGGGGGCGGTTTTGTT
TGGTTTTGCCGGAGTTTCCTTGTCGTATCATACCTTCAGTGGATTGATGG
GACCCCCCGCGTACTATATACTCCTTTCGGGTGAACACCCCGTGTGACCA
CGGAAATTGTCCATGGAGTACGGGGGAAAGAATATGCCTCTGTGTTCGTT
GCTATTCCACTCGAGATCCTTGTCTCAGTCTTTAGCTTATGAGGAGAGAG
CGATGTCCTCGCGAGAAACAAATGAAATTTGGATCACGCATCGTTCTATT
TTGATTTGTTGCACCCACCGACCAGCTCGGGTTTGTTCTCCATTTCCTCG
TCCGTCGTTGATTCCTCTACGTTGGCATTTTGTTGAGTCTCAGAAAACAC
ACTTATATACATACCAGTATATACGTATGTTCCACTCTCTCGTGAAAAAG
TTGCTTAGACGGCATCTGAATAAAAAGCTTACGCCTGTGGCCTTCGAGTC
CACAATATCGACCTACGATGCTGCTGTACTGAAACCAAGACGGGGTGTCC
GCCCCCCCTTTCCTTTATTTACCCTCATATCTCCTGTTTCATCATCTCTT
TTCCATCGTTCTTCGTGCGGAACGTTTCAATTGGTGTTGCGCGCTCTGAC
GCAGAGGGACGGATTAGGTGTTCTGGGTGATCTGAGGGGTGAGGGCACGT
GATGTCGGAGACCACTCTTCAAAAGGTGGAGGTGGAGGTGCAGAAGCTCA
CGGCGGAATTGGAAAGCTTGGAGCGAGCACAGGTACGGCTTGCTCGATGT
TGTGCATACGCAGGCACTACCGGACTGTTGCTCGGTGCATGTGGTACCGC
AGGTTGCATAAGATATCACACTCTCATAAGATACAACACCCCCCGAAAAG
TCACACAATACCACACTCGTGTGCTACTTTTTTCAATCCCGAAAAAGGCG
CAAGTCTGTCTCAGTCAGTGAAAAGGGTGACAAAATATACCGCACCCCCC
AGTCAAAATTACACAATACGACATCGTTGTGATAATTTTTTTGTACCCAG
AAATGTCATCACACCGGTGTGATATCTTATGCAACCTACGGTACACACAG
GCAAGGTGTGTATGGAAATCGCCGAACGAAAGGACACCCAACGCCGTTTT
GAACCCCGTGGGCAGCAAACCCTTCCAAAACCCGAGGTTTAGTTTTCCGA
AAAAGAATAACGAGAAAAACAAGAATGTTTTGTGCTCCAGCGATGAAACG
TGCTGCACCATGTCTTGGTTTGCAGGAGGCCATGCGAAGCACGAGGCTCA
GGCACTGTTGGGGTTTCTTTTGAGAGAGCCGGCACGTAGTGGGGACGAGG
AAATTCAACATGTCAGAAGCTCGCCGAAGCGTCCCAAACAAATCCAACCG
TTTTCTGACGCTGGTAACGCACCCGCACCTATGCCGGGAACGGAAACCTT
TATGTTGAGTTTTAGGCATGTTTTTGGGGCTAAATTAGCACCCGCGGCAC
CTCAGGTAGCCAACAGCATGCCCTGTGAATTCGGCCACAACCTGGATGCG
TACCGTGAGCATGCACTTAGGTCATTCCTTGCCTTTGTGGCGATAGCGAA
CCCCCGTAAGACGCCCCCGTTTTCGTCTAGTCACTGTTCTAATCGTACTT
GGCTGAACAGGAAGGGTTGGGTCACGCCATCCACTGAAGGACTTGTGTTA
CGTACACGAAAGACGAGGCCGACAAGAACGGCAGTTTGCAATCCTTACAG
CTTTAACCGGTTAATGTACCAGGGCGCCGAACGAGCAATGTGTCATGACC
ACTTTTTCCTTATGCCCTCCGACTGTCCCTGCCTACACTATTCGCTGTCA
CCGTCGGTGTCGTTGCTTTTTCGCAGATGTATTCAGCAGCCTTCAACAAT
CTGTTGGGGTACGTAAGCGAAACCCCCGAACCGTTTTCGTCCGCGCCACC
GGAGCCCAACTCCTGGCACGCCAACGTCGGGAGTGCCGGCCCATGCTGCT
CAGTTTCGTGATTGGAACTCACATCTCATTACACTTCACCGAAGGGGGGA
TGATGAAAGCCCCACAGAGTTCAGTATCATACACGGGGCAGGGGTGCAGG
GGGGTGTCATTTTTGGGAAGGGTCGTGCGTATTTATCTTTTTGTTGTGTG
TGTTACAGCGGGTGTAACAAACGCCTTGCTCGGGTCGGGCTGGCGTGGAT
TTCACTAACCAGCGAGGCTCACAGTAGTACACTTATTAAGGGAGGGAAGC
AGAAAGAGAGGCCGCCAAGGGCGAGTGCGTGGTTGTTGCCGACGATGCCA
CCGCGTTACCTTCGTCTGATGTTGGCGGCAGCAGTTGGATGGCTACTCTA
TCTCGTTTCCAGCGATACGTGGATTCGTTCAAGCAGCGCGTGTGCATTCA
CTGGTGCCAGCGGCGGTGTTTATTATTTGTATTTCGTACAACAGCAGACA
TCGCTGTCTGATTGTTGTGCGTTGAGGGTCAGCAAAGAAACGGCTCCATT
GTGCTACTTGTAGTCGTTTCGGGTCTCTTGTCTATTTGATTGTGCGTTTA
TCCACTCTTTCTCGCAGTGTTTGTGTGCATGTTTCCTTGAAGAGGGAGAA
GGCGGTAAAGCGAAAGAAGAGATGACGATACATGGATGAATGGCTTTTTT
TGGGGGATGCCAGAGAGAAGACAACAGACATGGACAGGCGGTATGTCTCG
AGCTTAGCCTAGTGCGTGTTTGGGACGAAATAGAGAGTGAAGAGGAATCC
CTTTTGTGAGTTCTTGCTTCTATCAAGCGGTCGAAATATCTAAGGCTGGA
TGGGATGGTAATAAAATTTGGTCGTCATTCAGTATGTGTTTCGCTATCGA
TCGGAAAGGATACGGCGACAGGAGTTGCTTTTCCCACACGCCACCCAAAG
TCCTTTGCGGGGTCACCGAGGGCCCCACTTACTCTGGCTTTGCCTTGGTT
TTGTCGCGCAAGAGGCACGCATATTATAGGAGTAGGTTTTTTCCCAATTC
GCCGTCGCGTCGAATTTGAAATTGATGTACTTCGAAGTACTCCGGAGTAT
GTATCAACGATGGGCGTTCAAGCAGGCGTTTTTCCCGTCATAAATACAAT
GATTCGTCGTTATACTACTTCGAAGTCACTGCTGACGGCACTTCTCAGGT
CTTGTTGGCCCTGATGTTGTCAATAGACACGCGTCATTAGACACGCAAAA
ACTATGTATCACTTTTCAAGTCGGAAAATGCTACGTTGGACATGTTGCGT
CCCGGGCATTGGCTTCCCACTCCCTCAAGCTATACCACGTGCCCACTCCT
ACGAAGAACACTGC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig86:197685..204298-

>mRNA_P-littoralis_Contig86.66.1 ID=mRNA_P-littoralis_Contig86.66.1|Name=mRNA_P-littoralis_Contig86.66.1|organism=Pylaiella littoralis U1_48|type=CDS|length=216bp|location=Sequence derived from alignment at P-littoralis_Contig86:197685..204298- (Pylaiella littoralis U1_48)
ATGTCGGAGACCACTCTTCAAAAGGTGGAGGTGGAGGTGCAGAAGCTCAC
GGCGGAATTGGAAAGCTTGGAGCGAGCACAGATGTATTCAGCAGCCTTCA
ACAATCTGTTGGGGTACGTAAGCGAAACCCCCGAACCGTTTTCGTCCGCG
CCACCGGAGCCCAACTCCTGGCACGCCAACGTCGGGAGTGCCGGCCCATG
CTGCTCAGTTTCGTGA
back to top