mRNA_P-littoralis_Contig86.165.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig86.165.1
Unique NamemRNA_P-littoralis_Contig86.165.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig86.165.1 vs. uniprot
Match: A0A6H5L2E9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2E9_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 1.030e-9
Identity = 27/58 (46.55%), Postives = 37/58 (63.79%), Query Frame = 1 
Query:  319 TYKAFRNQACYDAARSLNVQGMGVQVRRGKCFEKACQALWPGEAPVAQWCAAAFSEDN 492
            T+  FRNQ C+DAA+ L   GMGVQ+ R +CF +A +A++PG     QW    FS +N
Sbjct:  107 TFNVFRNQCCFDAAKKLRADGMGVQLARKECFTQAFRAVFPGNGTPDQWVETTFSAEN 164
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig86.165.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L2E9_9PHAE1.030e-946.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig86contigP-littoralis_Contig86:581034..583368 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size758
Hectar predicted targeting categoryother localisation
Exons2
Cds size354
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791736.1521585-UTR-P-littoralis_Contig86:581033..5812401680791736.1521585-UTR-P-littoralis_Contig86:581033..581240Pylaiella littoralis U1_48UTRP-littoralis_Contig86 581034..581240 +
1680791736.1892204-UTR-P-littoralis_Contig86:583171..5833681680791736.1892204-UTR-P-littoralis_Contig86:583171..583368Pylaiella littoralis U1_48UTRP-littoralis_Contig86 583172..583368 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791736.162723-CDS-P-littoralis_Contig86:581240..5813751680791736.162723-CDS-P-littoralis_Contig86:581240..581375Pylaiella littoralis U1_48CDSP-littoralis_Contig86 581241..581375 +
1680791736.1762202-CDS-P-littoralis_Contig86:582952..5831711680791736.1762202-CDS-P-littoralis_Contig86:582952..583171Pylaiella littoralis U1_48CDSP-littoralis_Contig86 582953..583171 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig86.165.1prot_P-littoralis_Contig86.165.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig86 581241..583171 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig86.165.1

>prot_P-littoralis_Contig86.165.1 ID=prot_P-littoralis_Contig86.165.1|Name=mRNA_P-littoralis_Contig86.165.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=118bp
MQGGEGPPGHLRRAPSGAHSCCLDGVCEGNSREARECTYKAFRNQACYDA
ARSLNVQGMGVQVRRGKCFEKACQALWPGEAPVAQWCAAAFSEDNIQAES
DTEGDGDDVSQEPSPEG*
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mRNA from alignment at P-littoralis_Contig86:581034..583368+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig86.165.1 ID=mRNA_P-littoralis_Contig86.165.1|Name=mRNA_P-littoralis_Contig86.165.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2335bp|location=Sequence derived from alignment at P-littoralis_Contig86:581034..583368+ (Pylaiella littoralis U1_48)
ATACCCGACCAAGGTGTTAGTGGAGAGCCTCAATCTTCCAGGTGGTGATC
GAGTTGTACACGAGCAGCTCAAGTTTGTGGCAGAACATCACACGGCTCGG
ACCAGGGCGTTCGCTACAACTGCAAGCCGCCTTGTGGGCCGGCTACACTG
CTCTCACGGCGTGGAGAAGCCCGAGCCTCTCCCTGTCATCAAAAACCGGG
ATGAGCGATGCAAGGCGGCGAGGGACCACCCGGGCACCTGCGGCGTGCAC
CAAGCGGAGCTCATAGCTGCTGTCTCGATGGAGTCTGTGAAGGCAACAGC
CGAGAAGCGCGGGAGTGTACGTACAAGGCCTTCCGCAACCAGGTGTGTGA
AACAGCTGAGAAATCGAGTGCGTCGGATCATCATGATGTGCAGCGTTAGC
CGCAGCACATGCATGCACAAAAGCAGAGATCAGCAGCAGTACTGCTACAA
CACTCGAAGTACTTCACGAATCGTGCGCTCCTGTCTGTGTTGACCATTCT
CTTGTGTTACCCCGCCTGGTGCTCTCTCAGAACACTTCGTACAGCAGCAT
ACAACGGCAGTAGCTTCGCGTCTGAGACATATGGGACTACAACACGCATC
ATACCTGGTAACAAAGACACACCCACACATGAACCACAAAAAACACACCC
AGACACTAAACGCGGTATGATACAAGTACTGCTGTAGCAGTGCTGTATGC
GGTGTGCTGACTGCGGCGTTGTGTGCGTGCACGCCGTACTCTCTCCCTTT
TCTTCTCTACCTTCACCTGACTCTGGGATTGCACGCTCCAGTTTTGAGTA
TGCATATACTCTACTACCTGTCTTGCAGTCTCTGTTGCTGCCGTACGTTT
GTTGTGCTTTGTGCGGTAATGTGTGCTCGGCCCTCGCATGGTGTTCTCGA
TCGCTTTCTCTCTCTTTATATTCATTTCGTGTGCTGTTTGTCTGCCGTAG
CAGTATATCTGCTGCCGAGAGAGACAGGGAGAGAGAGAGAGCGAGGGCAT
ACCTGTGTGCGTGATTGGCATCAATGTTGTGTGCTGGTCGCTACAACAGT
ACGTACTGCGACTCGCTGTGTATTCGTGTTTGCTTTCGACTGATGCCGCT
GTCCTGCGCTCTGCCTGTGTGCTGCTTCGGTACTGCGGCCCGATGGGCCC
CTATAAACCTATAAATCTACGTCTGTGCCTGCTGTCTTGTTTGCCGTTGA
CCTTATCCCTTTGTTACTTGTGCTGTGTGTCCAAAGAAGTGGTCGGCAGG
CATTATTGCAGGATTTCTGGTGTAGTTGCCAAGGCGTTATGGCAGGTGCA
GCAAGTGCAGATAGGGGCTGCCTAAAAATACATCTTCTGCCAAGCCATTT
CAAACCTTCACGCCTGTGGGTGCACCCTACTTGTCTCTGCGCGAAAAGTA
TCGTGATGGAACAGCGTAACCTCAAATAGCCTCTACCCCACGACGGCGTT
CCGAAGAAATTAAGTTGTGAAACTTGATGCCCCCCCCCCTCTTCAGCTAA
AGCTAAGGTGCAAGCGGTACCCCTGGTAACCAACCGCCTGCAGCCAACGC
GGCGCACTTTTCACTGGCGGCAGGTCGTTAATTCGGTGATTATTATGTTT
CCTGCTTCCACATGCACCATGACCAAGATTCGTTATCGGGGACGACACCA
CGGTCTCCTCCACTTTGTACGAATTTCGATACGCCTCCACTACCAATAAT
CCACCAGCAATTTCCCTCTGAATGTAACATTTTTGAATCATTGTTAAATA
CGAATTAGGTTTGTGATGAATCCCCCGCATGATGTCAATTTATAGTACTT
ATTTTTGTCAGAGGATGTTTTGCGCAAGATTTAATCATTTTGCGCTGACG
GCCTGCACTTCAAAGCCGCGCCCTACCACAACACCCCACACTATCTTCAC
CCTGCATGATTTTAAACAGGCGTGCTACGATGCGGCGCGTTCTCTGAATG
TCCAAGGCATGGGTGTACAAGTTCGTCGCGGTAAATGCTTCGAAAAGGCA
TGCCAGGCACTTTGGCCCGGAGAAGCTCCAGTAGCCCAGTGGTGTGCGGC
GGCGTTCTCGGAGGATAATATTCAGGCAGAGTCCGACACGGAAGGGGACG
GCGACGACGTATCACAGGAACCCAGCCCCGAAGGCTGACATCTGGCGAAC
TTGGGATGCTTATTAATATTGATGTTTGCTTTACAAGAGGCCTAAGGAGG
AGCAAGTATTGCGCGTCGCCCAAATTTGCTGTCATGTTACCTGCAACATG
TTTTCTTACGCTAGCATCGCAGCGTGGATTATCATGCGGGGAATCGCGCC
GTCGCCACTTGTGGAGATGTTGGGCTCGAGATGCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig86:581034..583368+

>mRNA_P-littoralis_Contig86.165.1 ID=mRNA_P-littoralis_Contig86.165.1|Name=mRNA_P-littoralis_Contig86.165.1|organism=Pylaiella littoralis U1_48|type=CDS|length=354bp|location=Sequence derived from alignment at P-littoralis_Contig86:581034..583368+ (Pylaiella littoralis U1_48)
ATGCAAGGCGGCGAGGGACCACCCGGGCACCTGCGGCGTGCACCAAGCGG
AGCTCATAGCTGCTGTCTCGATGGAGTCTGTGAAGGCAACAGCCGAGAAG
CGCGGGAGTGTACGTACAAGGCCTTCCGCAACCAGGCGTGCTACGATGCG
GCGCGTTCTCTGAATGTCCAAGGCATGGGTGTACAAGTTCGTCGCGGTAA
ATGCTTCGAAAAGGCATGCCAGGCACTTTGGCCCGGAGAAGCTCCAGTAG
CCCAGTGGTGTGCGGCGGCGTTCTCGGAGGATAATATTCAGGCAGAGTCC
GACACGGAAGGGGACGGCGACGACGTATCACAGGAACCCAGCCCCGAAGG
CTGA
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