mRNA_P-littoralis_Contig86.160.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig86.160.1 vs. uniprot
Match: A0A6H5L3T1_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3T1_9PHAE) HSP 1 Score: 146 bits (369), Expect = 1.420e-36 Identity = 67/148 (45.27%), Postives = 96/148 (64.86%), Query Frame = 2
Query: 5 MGQLAFTFFTFTFPAVVVAFIVKQTNDCFTFCTTTPIDEADDKREDRHKAKKANNGNARWPEGGINMSTMYSLFGIVLALGLVKLPAMEDHWDVSKFHDFELLRSCMIRDMFALVYCRFFHMPPGGGPKRRKDDTLSAIW---YHIRF 439
+G+LAFTFF+ FPA V+ +V++TN+ F FC +T + +E RH+ +KA G + WP+ GI S M + I+L +GLV+LPAM DHW FHD++L+R+C+ RDMF L+Y RFFHM G P+R + T W +HIR+
Sbjct: 489 LGELAFTFFSIMFPAAVILLLVRKTNEYFNFCRSTKNPKG---QEQRHRDQKARKGKSSWPKKGITKSMMQGVISIILTIGLVQLPAMHDHWSCHSFHDYKLVRACLPRDMFLLIYGRFFHMASSGAPERLQGGTTEPGWDSLHHIRY 633
BLAST of mRNA_P-littoralis_Contig86.160.1 vs. uniprot
Match: A0A6H5JFU5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFU5_9PHAE) HSP 1 Score: 146 bits (369), Expect = 2.960e-36 Identity = 68/148 (45.95%), Postives = 97/148 (65.54%), Query Frame = 2
Query: 5 MGQLAFTFFTFTFPAVVVAFIVKQTNDCFTFCTTTPIDEADDKREDRHKAKKANNGNARWPEGGINMSTMYSLFGIVLALGLVKLPAMEDHWDVSKFHDFELLRSCMIRDMFALVYCRFFHMPPGGGPKRRKDDTLSAIW---YHIRF 439
+G+LAFTFF+ FPA V+ +V++T + F FC +T + ++E RH+ KKA G + WP+ GI M + GI+LA+GLV+LPA+ DHW FHD++L+R+C+ RDM L+Y RFFHM G PKR +D T W +HIR+
Sbjct: 695 LGELAFTFFSIMFPAAVILLLVRKTYEYFNFCRSTKNPK---EQEQRHRDKKARKGKSSWPKKGITKRMMQGVIGIILAIGLVQLPAVHDHWSCHSFHDYKLVRACLPRDMSLLIYGRFFHMASSGAPKRLQDGTTEPGWGSLHHIRY 839
BLAST of mRNA_P-littoralis_Contig86.160.1 vs. uniprot
Match: A0A6H5KUF1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUF1_9PHAE) HSP 1 Score: 90.5 bits (223), Expect = 6.760e-17 Identity = 46/125 (36.80%), Postives = 64/125 (51.20%), Query Frame = 2
Query: 71 KQTNDCFTFCTTTPIDEADDKREDRHKAKKANNGNARWPEGGINMSTMYSLFGIVLALGLVK-------LPAMEDHWDVSKFHDFELLRSCMIRDMFALVYCRFFHMPPGGGPKRRKDDTLSAIW 424
+ N+ F FC +T I + +E RH+ KKA G + WP+ I S M + GI L A+ DH FHD++L+R+C+ RD F L+Y RFFHM G P+R +D T W
Sbjct: 568 EDANEYFNFCRSTKIPKG---QEQRHRDKKARKGKSSWPKKAITKSMMQGVIGIRSDLSAATGGHFQATNAAVHDHLSCHSFHDYKLVRACLPRDTFLLIYGRFFHMASSGAPERLQDGTTEPCW 689
BLAST of mRNA_P-littoralis_Contig86.160.1 vs. uniprot
Match: A0A6H5KIE0_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIE0_9PHAE) HSP 1 Score: 85.1 bits (209), Expect = 1.520e-15 Identity = 49/143 (34.27%), Postives = 65/143 (45.45%), Query Frame = 2
Query: 23 TFFTFTFPAVVVAFIVKQTNDCFTFCTTTPIDEADDKREDRHKAKKANNGNARWPEGGINMSTMYSLFGIVLALGLVKLPAMEDHWDVSKFHDFELLRSCMIRDMFALVYCRFFHMPPGGGPKR--RKDDTLSAIW---YHIR 436
T F FP + V +TN CTT + A D R+ K G PE +Y + GI + +GL K M HW S D+ L+R CM RD+F L+YCRF H G P R +D T + + +HIR
Sbjct: 131 TCFDMMFPDEAIDLFVDKTNKYVNLCTTPSLPGAKDTRKAHQLEKTRTLGMVTLPEPAFERKHIYGMLGITITMGLTKKTHMRKHWSRSLHDDYPLVRECMSRDLFELLYCRFIHCSDGNAPPRWAGEDKTPNPEFDSKWHIR 273
BLAST of mRNA_P-littoralis_Contig86.160.1 vs. uniprot
Match: A0A6H5KNV0_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNV0_9PHAE) HSP 1 Score: 85.5 bits (210), Expect = 3.510e-15 Identity = 49/143 (34.27%), Postives = 65/143 (45.45%), Query Frame = 2
Query: 23 TFFTFTFPAVVVAFIVKQTNDCFTFCTTTPIDEADDKREDRHKAKKANNGNARWPEGGINMSTMYSLFGIVLALGLVKLPAMEDHWDVSKFHDFELLRSCMIRDMFALVYCRFFHMPPGGGPKR--RKDDTLSAIW---YHIR 436
T F FP + V +TN CTT + A D R+ K G PE +Y + GI + +GL K M HW S D+ L+R CM RD+F L+YCRF H G P R +D T + + +HIR
Sbjct: 422 TCFDMMFPDEAIDLFVDKTNKYVNLCTTPSLPGAKDTRKAHQVEKTRTLGMVTLPEPAFERKHIYGMLGITITMGLTKKTRMRKHWSRSLHDDYPLVRECMSRDLFELLYCRFIHCSDGNAPPRWAGEDKTPNPEFDSKWHIR 564
BLAST of mRNA_P-littoralis_Contig86.160.1 vs. uniprot
Match: A0A6H5JW40_9PHAE (HTH La-type RNA-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW40_9PHAE) HSP 1 Score: 85.5 bits (210), Expect = 3.960e-15 Identity = 49/143 (34.27%), Postives = 65/143 (45.45%), Query Frame = 2
Query: 23 TFFTFTFPAVVVAFIVKQTNDCFTFCTTTPIDEADDKREDRHKAKKANNGNARWPEGGINMSTMYSLFGIVLALGLVKLPAMEDHWDVSKFHDFELLRSCMIRDMFALVYCRFFHMPPGGGPKR--RKDDTLSAIW---YHIR 436
T F FP + V +TN CTT + A D R+ K G PE +Y + GI + +GL K M HW S D+ L+R CM RD+F L+YCRF H G P R +D T + + +HIR
Sbjct: 638 TCFDMMFPDEAIDLFVDKTNKYVNLCTTPSLPGAKDTRKAHQVEKTRTLGMVTLPEPAFERKHIYGMLGITITMGLTKKTRMRKHWSRSLHDDYPLVRECMSRDLFELLYCRFIHCSDGNAPPRWAGEDKTPNPEFDSKWHIR 780
BLAST of mRNA_P-littoralis_Contig86.160.1 vs. uniprot
Match: A0A6H5JJP9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJP9_9PHAE) HSP 1 Score: 82.8 bits (203), Expect = 3.230e-14 Identity = 47/128 (36.72%), Postives = 59/128 (46.09%), Query Frame = 2
Query: 14 LAFTFFTFTFPAVVVAFIVKQTNDCFTFCTTTPIDEADDKREDRHKAKKANN-GNARWPEGGINMSTMYSLFGIVLALGLVKLPAMEDHWDVSKFHDFELLRSCMIRDMFALVYCRFFHMPPGGGPKR 394
L T F FP V V +TN CTT P+ A D R+ H+ KK G PE +Y + GI + +GL M HW S D+ L+R CM RD+F L+Y RF H G P R
Sbjct: 530 LMMTCFDMMFPDEAVDLFVDKTNKYVNLCTTPPLPGAKDTRK-AHQVKKTRTLGMVTLPEPAFERKHIYGMLGITITMGLTMKTRMRKHWSRSLHDDYPLVRKCMSRDLFELLYSRFIHCSDGNAPPR 656
BLAST of mRNA_P-littoralis_Contig86.160.1 vs. uniprot
Match: A0A6H5K5H6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5H6_9PHAE) HSP 1 Score: 66.6 bits (161), Expect = 5.300e-9 Identity = 33/90 (36.67%), Postives = 46/90 (51.11%), Query Frame = 2
Query: 200 NMSTMYSLFGIVLALGLVKLPAMEDHWDVSKFHDFELLRSCMIRDMFALVYC-RFFHMPPGGGPKRRKDD-----TLSAIWYHIRFV*FL 451
N +Y + G+ + +GL K M W S+ HD+ L+R+CM RD F L+YC RF H P R DD + W HIR + +L
Sbjct: 147 NEDNIYGMVGLTITMGLTKKTRMRKRWSTSQRHDYPLVRNCMSRDKFELLYCCRFIHCSDANAPSRLLDDGEDDPDYDSKW-HIRIMGYL 235
BLAST of mRNA_P-littoralis_Contig86.160.1 vs. uniprot
Match: A0A6H5K2B4_9PHAE (DDE_Tnp_1_7 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2B4_9PHAE) HSP 1 Score: 63.5 bits (153), Expect = 8.570e-8 Identity = 30/90 (33.33%), Postives = 42/90 (46.67%), Query Frame = 2
Query: 185 PEGGINMSTMYSLFGIVLALGLVKLPAMEDHWDVSKFHDFELLRSCMIRDMFALVYCRFFHMPPGGGPK------RRKDDTLSAIWYHIR 436
PE +Y + GI + +G K + HW S D+ L+R CM RD+F L+YCRF H G P + + + W HIR
Sbjct: 537 PEPAFARKHIYGMLGITITMGFTKKTRIRKHWSRSLHDDYPLVRECMSRDLFELLYCRFIHCSDGNAPPHWTGEDKTPNPEFDSKW-HIR 625 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig86.160.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig86.160.1 >prot_P-littoralis_Contig86.160.1 ID=prot_P-littoralis_Contig86.160.1|Name=mRNA_P-littoralis_Contig86.160.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=147bp MGQLAFTFFTFTFPAVVVAFIVKQTNDCFTFCTTTPIDEADDKREDRHKAback to top mRNA from alignment at P-littoralis_Contig86:569605..571821+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig86.160.1 ID=mRNA_P-littoralis_Contig86.160.1|Name=mRNA_P-littoralis_Contig86.160.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2217bp|location=Sequence derived from alignment at P-littoralis_Contig86:569605..571821+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig86:569605..571821+ >mRNA_P-littoralis_Contig86.160.1 ID=mRNA_P-littoralis_Contig86.160.1|Name=mRNA_P-littoralis_Contig86.160.1|organism=Pylaiella littoralis U1_48|type=CDS|length=441bp|location=Sequence derived from alignment at P-littoralis_Contig86:569605..571821+ (Pylaiella littoralis U1_48)back to top |