mRNA_P-littoralis_Contig86.133.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig86.133.1
Unique NamemRNA_P-littoralis_Contig86.133.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig86.133.1 vs. uniprot
Match: D8LTF4_ECTSI (WW domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTF4_ECTSI)

HSP 1 Score: 139 bits (351), Expect = 1.210e-36
Identity = 73/133 (54.89%), Postives = 90/133 (67.67%), Query Frame = 1 
Query:    1 WGSWTSLTDAEGIEFVEFDTNVGWKLFGKEDKLGILSEVSERAAVMGDLAEGIHTLLVFATCGFFFFPLSALWLSN-DGLWSASRETSGKTVSEGKEESTKPSKRNDNPLGLAGDCHRWMFVMAIIYVFAGLW 396
            WG WTSL+DAE ++FVEFDT++GW+ +GK DKLG+LSE+SE  AVMG LA G+H L++   C F     SALWLS  D   S    T    V   + + TKP+ R D+PL LA DCHRWMFVMA  Y+ AGLW
Sbjct:   66 WGRWTSLSDAEDVQFVEFDTHIGWQQYGKVDKLGLLSELSESTAVMGSLAGGMHGLVIIIACVFXXXSSSALWLSYFDFCCSRQTPTHEGKVGPKEGQKTKPAMR-DHPLVLARDCHRWMFVMAASYILAGLW 197
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BLAST of mRNA_P-littoralis_Contig86.133.1 vs. uniprot
Match: A0A835YTM1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTM1_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 1.730e-8
Identity = 41/137 (29.93%), Postives = 66/137 (48.18%), Query Frame = 1 
Query:    1 WGSWTSLTDA--EGIEFVEFDTNVGWKLFGKEDKLGILSEVSERAAVMGDLAEGIHTLLVFATCGFFFFPLSALWLSNDGLWSASRETSGKTVSEGKEESTKPSKR---NDNPLGLAGDCHRWMFVMAIIYVFAGLW 396
            WG W  + D    G+  V FDT +GWK +GK+ K G LS++S + ++ G ++  + T  V     F  + L  ++ S  G   A +    ++V   KEE  +   R     + + +A   H  + +M    VFAGLW
Sbjct:  140 WGVWNEMQDTTPSGLALVSFDTQLGWKGYGKDGKFGSLSDLSSKTSIAGMMSAFMATFTVLFALVFGVWMLVIIFKSEQGRRQAEQRAYEQSVEGFKEEDPEHETRCTTGCHGIEVAVRSHFLLKIMGYWMVFAGLW 276
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig86.133.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LTF4_ECTSI1.210e-3654.89WW domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
A0A835YTM1_9STRA1.730e-829.93Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig86contigP-littoralis_Contig86:483362..483757 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size396
Hectar predicted targeting categoryother localisation
Exons1
Cds size396
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791734.9623573-CDS-P-littoralis_Contig86:483361..4837571680791734.9623573-CDS-P-littoralis_Contig86:483361..483757Pylaiella littoralis U1_48CDSP-littoralis_Contig86 483362..483757 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig86.133.1prot_P-littoralis_Contig86.133.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig86 483362..483757 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig86.133.1

>prot_P-littoralis_Contig86.133.1 ID=prot_P-littoralis_Contig86.133.1|Name=mRNA_P-littoralis_Contig86.133.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=132bp
WGSWTSLTDAEGIEFVEFDTNVGWKLFGKEDKLGILSEVSERAAVMGDLA
EGIHTLLVFATCGFFFFPLSALWLSNDGLWSASRETSGKTVSEGKEESTK
PSKRNDNPLGLAGDCHRWMFVMAIIYVFAGLW
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mRNA from alignment at P-littoralis_Contig86:483362..483757+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig86.133.1 ID=mRNA_P-littoralis_Contig86.133.1|Name=mRNA_P-littoralis_Contig86.133.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=396bp|location=Sequence derived from alignment at P-littoralis_Contig86:483362..483757+ (Pylaiella littoralis U1_48)
TGGGGATCGTGGACCTCCCTTACTGACGCGGAGGGCATCGAGTTTGTCGA
GTTCGACACCAACGTCGGCTGGAAGTTGTTCGGCAAGGAGGATAAACTGG
GGATTCTTTCCGAGGTCAGCGAGCGTGCCGCCGTCATGGGCGACCTGGCT
GAAGGCATACACACCCTTTTGGTCTTCGCCACGTGCGGGTTCTTTTTTTT
TCCCCTGTCCGCGCTCTGGCTGAGCAACGACGGCCTCTGGTCCGCCTCGC
GCGAAACATCGGGGAAGACTGTTAGCGAAGGAAAAGAAGAATCGACTAAG
CCCTCGAAACGCAACGACAACCCTCTCGGACTTGCTGGGGACTGTCACCG
ATGGATGTTCGTGATGGCCATAATTTATGTATTCGCTGGACTGTGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig86:483362..483757+

>mRNA_P-littoralis_Contig86.133.1 ID=mRNA_P-littoralis_Contig86.133.1|Name=mRNA_P-littoralis_Contig86.133.1|organism=Pylaiella littoralis U1_48|type=CDS|length=396bp|location=Sequence derived from alignment at P-littoralis_Contig86:483362..483757+ (Pylaiella littoralis U1_48)
TGGGGATCGTGGACCTCCCTTACTGACGCGGAGGGCATCGAGTTTGTCGA
GTTCGACACCAACGTCGGCTGGAAGTTGTTCGGCAAGGAGGATAAACTGG
GGATTCTTTCCGAGGTCAGCGAGCGTGCCGCCGTCATGGGCGACCTGGCT
GAAGGCATACACACCCTTTTGGTCTTCGCCACGTGCGGGTTCTTTTTTTT
TCCCCTGTCCGCGCTCTGGCTGAGCAACGACGGCCTCTGGTCCGCCTCGC
GCGAAACATCGGGGAAGACTGTTAGCGAAGGAAAAGAAGAATCGACTAAG
CCCTCGAAACGCAACGACAACCCTCTCGGACTTGCTGGGGACTGTCACCG
ATGGATGTTCGTGATGGCCATAATTTATGTATTCGCTGGACTGTGG
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