mRNA_P-littoralis_Contig86.130.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig86.130.1
Unique NamemRNA_P-littoralis_Contig86.130.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig86.130.1 vs. uniprot
Match: D8LTF3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTF3_ECTSI)

HSP 1 Score: 385 bits (990), Expect = 6.800e-122
Identity = 184/298 (61.74%), Postives = 214/298 (71.81%), Query Frame = 3 
Query:  660 MSWVQPGESLLLVDESVPEGASSGDYCCLSAMDNLTTVCGVDGGVAPCRMPQVFEEKEDTCGVDGIVGTAHSGGELCCPLGCDTCGSTGCGEQHISYIYPGDLPWSTTAPDTATTADYCCISAFRDVGVCGEDGVEPPCTIPEVEVTLAPQGDLVDTCGVDGIEGIANGDECCPLGCGQCGGTGCGSIDMGYVTPYLEVDPLT-ATSAEYCCSSAFDTTTPTCGDEGVLPPCYIVPGTPAP-VAAATLPLAVISNLTDTCNLPDMAGILDSTGTRCCPQGCGMCGGAGCGSIDMNLIT 1547
            MSWV PG++ L VD SVP+GA+S DYCC    +   TVCG  G  APCRMPQ FE K DTCGVDGI G A      CCPLGC  C   GCG+QHISY++PG+LPWSTTAP+ + T D+CC SAFRDVG CG DG EPPC IPEV  TL P+    DTCGV GI+G+  GD+CCPLGCGQCG TGCGSIDMGY+TPYL+ +P + ATS  YCC+S+F   +PTCGD GV PPC I           ATL   V S+L D C LPD+ GI+D++GTRCCPQGCGMCGG GCG +DMNL+ 
Sbjct:    1 MSWVMPGDNPLSVDPSVPDGATSADYCCYDIFETTETVCGA-GVEAPCRMPQEFETKVDTCGVDGIEGLAGPA-NTCCPLGCANCVGIGCGDQHISYVFPGELPWSTTAPEGSATQDFCCQSAFRDVGECGVDGAEPPCMIPEVVETLPPRDLPDDTCGVVGIQGVRTGDKCCPLGCGQCGDTGCGSIDMGYITPYLDHEPASNATSTSYCCTSSFTVNSPTCGD-GVSPPCLIAAEDQVTETVTATLAPEVASSLIDNCGLPDIPGIMDTSGTRCCPQGCGMCGGVGCGLVDMNLVA 295
[Close]
BLAST of mRNA_P-littoralis_Contig86.130.1 vs. uniprot
Match: A0A6H5JLD2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLD2_9PHAE)

HSP 1 Score: 173 bits (438), Expect = 4.050e-44
Identity = 112/277 (40.43%), Postives = 138/277 (49.82%), Query Frame = 3 
Query:  630 CGGDSCSSLPMSWVQPGESLLLVDESVPEGASSGDYCCLSAMDNLTTVCGV----DGGVAPCRMP----------QVFEEKEDTCGVDGIVGTAHSGGELCCPLGCDTCGSTGCGEQHISYIYP---GDLPWSTTAPDTATTADYCCISAF--RDVGVCG----EDGVEPPCTIPEVEVTLAPQGDLVDTCGVDGIEGIAN-GDECCPLGCGQCGGTGCGSIDMGYVTPYLEVDPLTATSAEYCCSSAFDTTTPTCGDEGVLPPCYIVPGTPAPVAA 1388
            CGG  C  + M+ V P      V+  VP  A SGDYCC S +D+    CG     D G  PC +P          +V     D CG+  + G   + G  CCP GC  CG  GCG   ++ + P   GD+P        A + DYCC S    RDV  CG    +D   PPC IP   V LA      DTC V+G+EG+++ G  CCPLGCGQCGG GCG+I +  + P     P  AT++ YCC  AF      CGD GV PPC I  GT  P AA
Sbjct:    2 CGGPGCGLVDMNVVAP-----TVEGDVPIDAKSGDYCCTSGVDSRDVTCGTGVGDDEGYPPCFIPVGTVTATLAPEVASSLIDNCGLPDMPGIMDASGTRCCPQGCGMCGGPGCGLVDMNVVAPTVEGDVPID------AKSGDYCCTSGVDSRDV-TCGTGTGDDEGYPPCFIP---VDLAE-----DTCYVEGVEGVSDDGVYCCPLGCGQCGGVGCGAIPVVNIFPDGRELPEDATASSYCCLRAFVEIEVVCGDPGVEPPCVIPEGTSRPPAA 258
[Close]
BLAST of mRNA_P-littoralis_Contig86.130.1 vs. uniprot
Match: A0A6H5JG71_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG71_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 8.180e-23
Identity = 45/67 (67.16%), Postives = 54/67 (80.60%), Query Frame = 3 
Query:  333 SRYPDCKGIQGTGNNADICCAEECLCTCGGTSEENAGKECFITQIRASPPAECDGTQNSTEACALGP 533
            S+   C GIQGTG NADICCA EC+CTCGGTS EN GKECF+T+IRA+PP  C G ++++EACAL P
Sbjct:   40 SQVATCNGIQGTGKNADICCASECVCTCGGTSAENIGKECFLTEIRATPPDWCTGEEDASEACALPP 106
[Close]
BLAST of mRNA_P-littoralis_Contig86.130.1 vs. uniprot
Match: A0A6H5JYT7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYT7_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 2.390e-21
Identity = 112/359 (31.20%), Postives = 140/359 (39.00%), Query Frame = 3 
Query:  570 DGVLSTDDDEMMCCPTGCGTCGGDSCSSLPMSWVQPGESLLLVDESVPEGA--SSGDYCCLSAMDNLTTVCGVDGGVAPCRMPQVFEEKEDT--------------C--GVDGIVGTAHSGGELCCPLGCDTCGSTGCGEQHISYIYPGDLPWSTTAPDTATTADYCCISAFRDVG-VCGEDGVEPPC--TIPEVEVTLAPQGDL------------VDTCGVDGIEGI-ANGDECCPLGCGQCGGTGCGSIDMGYVTPYLEVDPLTATSAEYCCSSAFDTTTPTCGDEGVLPPCYIVPGTPAPVA--------AATLPLAVISNLTDTCNLPDMAGILDSTGTRCCPQGCGMCGGAGC 1520
            DG+   D + ++CCP GCG C G  CS         G +  L   S   G   SSG+YC              D GVAPC    ++    DT              C  G++GI G     G +CCPLGC  C  +GC               S        T+  CC    +  G  C + GV P    + P  +                     V TC  DGIEGI  NG  CCPLGCGQC G+GCG+            + LT++S   CC     ++   C D GV P  Y   G+ AP A                      TC+  D+ GI D  G  CCP GCG CGG+GC
Sbjct:  472 DGIEGIDGNGVVCCPLGCGQCAGSGCSIA-------GAANGLTSSSCCGGGIKSSGNYC-------------DDTGVAPC----IYGSAPDTDXXXXXXXXXXIGTCSDGIEGIDGN----GVVCCPLGCGQCAGSGC---------------SIAGAANGLTSSSCCGGGIKSSGNYCDDTGVAPCIYGSAPNADDXXXXXXXXXXXXXXXXXXXDVGTCS-DGIEGIDGNGVVCCPLGCGQCAGSGCGAAGAA--------NGLTSSS---CCGGGIKSSGNYCDDTGVAPCIY---GS-APNADDDXXXXXXXXXXXXXXXXXATTCS-NDLEGI-DHKGEVCCPLGCGQCGGSGC 769
[Close]
BLAST of mRNA_P-littoralis_Contig86.130.1 vs. uniprot
Match: D7FIS5_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIS5_ECTSI)

HSP 1 Score: 106 bits (264), Expect = 1.260e-20
Identity = 109/361 (30.19%), Postives = 141/361 (39.06%), Query Frame = 3 
Query:  555 PCVVTDGVLSTDDDEMMCCPTGCGTCGGDSCSSLPMSWVQPGESLLLVDESVPEGA--SSGDYCCLSAMDNLTTVCGVDGGVAPCRMPQVFEEKED----------------TC--GVDGIVGTAHSGGELCCPLGCDTCGSTGCGEQHISYIYPGDLPWSTTAPDTATTADYCCISAFRDVG-VCGEDGVEPPC--TIPEV-------EVTLAPQGDLVDTCGVDGIEGI-ANGDECCPLGCGQCGGTGCGSIDMGYVTPYLEVDPLTATSAEYCCSSAFDTTTPTCGDEGVLPPCYIVPGTPAPVA--------AATLPLAVISNLTDTCNLPDMAGILDSTGTRCCPQGCGMCGGAGC 1520
            P   +DG    D + ++CCP GCG C G  CS+        G +  L   S   G   SSG+YC              D GVAPC      +  +D                TC  G++G+ G     G +CCPLGC  C  +GC               ST       T+  CC    +  G  C + GV P    + P+                  V TC  DGIEG+  NG  CCPLGCGQC G+GC +            + LT++S   CC     ++   C D GV P  Y   G+ AP A                     +TC+   + GI D  G  CCP  CG CGG+GC
Sbjct:  267 PGTCSDGTEGLDGNGVVCCPLGCGQCAGSGCSTA-------GAANGLTSSSCCGGGIKSSGNYC-------------DDTGVAPCIYGSAPDAGDDXXXXXXXXXXXXXXVGTCSDGIEGLDGN----GVVCCPLGCGQCAGSGC---------------STAGAANGLTSSSCCGGGIKSSGNYCDDTGVAPCIYGSAPDAGDDXXXXXXXXXXXXXXVGTCS-DGIEGLDGNGVVCCPLGCGQCAGSGCSTAGAA--------NGLTSSS---CCGGRIKSSGNYCDDTGVAPCIY---GS-APNADDXXXXXXXXXXXXXXXXXXENTCS-NGLEGI-DHKGEVCCPLRCGQCGGSGC 570
[Close]
BLAST of mRNA_P-littoralis_Contig86.130.1 vs. uniprot
Match: D7G651_ECTSI (Mannuronan C-5-epimerase C-terminal n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G651_ECTSI)

HSP 1 Score: 102 bits (254), Expect = 2.920e-19
Identity = 79/244 (32.38%), Postives = 105/244 (43.03%), Query Frame = 3 
Query:  534 ETVEGTNPCVVTDGVLSTDDDEMMCCPTGCGTCGGDSCSSLPMSWVQPGESLLLVDESVPEGASSGDYCCLSAMDNLTTVCGVDGGVAPCRM------PQVFEEKED---TC--GVDGIVGTAHSGGELCCPLGCDTCGSTGCGEQHISYIYPGDLPWSTTAPDTATTADYCCISAFRDVGVCGEDGVEPPCTI---PEVEVTLAPQGDLVDTCGVDGIEGI-ANGDECCPLGCGQCGGTGCGS 1220
            E+ + T  C  +DG    D + ++CCP GCG C GD C +        G +  L  ES          CC   + +L   C  D   APC +        V  E  D   TC  G +GI G     G +CCP+GC  C   GCG               T        ++ CC +  + +G+  +D  E PC I   P+ +   +   D   TC  DG EGI  NG  CCP+GCGQC G GCG+
Sbjct:  330 ESADETQTC--SDGTEGIDGNGVVCCPIGCGQCAGDGCGTA-------GSANGLGSES----------CCGGGVKSLGLYCD-DTNEAPCIIGSRPDTDDVDSESADETQTCSDGTEGIDGN----GVVCCPIGCGQCAGDGCG---------------TAGSANGLGSESCCGNGVKSLGLYCDDTNEAPCIIGSRPDTDDVDSESADETQTCS-DGTEGIDGNGVVCCPIGCGQCAGDGCGT 533
[Close]
BLAST of mRNA_P-littoralis_Contig86.130.1 vs. uniprot
Match: D8LDY5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDY5_ECTSI)

HSP 1 Score: 93.2 bits (230), Expect = 1.030e-18
Identity = 55/119 (46.22%), Postives = 70/119 (58.82%), Query Frame = 3 
Query: 1023 SAFRDVGVCGEDGVEPPCTIPEVEVTLAPQGDLV-DTCGVDGIEGIA-NGDECCPLGCGQCGGTGCGSIDMGYV--TPYLEVDPLTATSAEYCCSSAFDTTTPTCGDEGVLPPCYIVPG 1367
            SAFR  GV  E+ +E       + +       L  DTC V+G+EG++ +G  CCPLGCGQCGG GCGS D   +   P  E+ P  A ++ YCC SAFD++T  CGD GV PPC I  G
Sbjct:   33 SAFRGRGVQNEENLELLADAETININWRSLQVLAEDTCHVEGVEGVSGDGVYCCPLGCGQCGGIGCGSRDESLIFRDPRREL-PAGAGTSSYCCLSAFDSSTAVCGDLGVEPPCLIPEG 150
[Close]
BLAST of mRNA_P-littoralis_Contig86.130.1 vs. uniprot
Match: A0A6H5L8H5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8H5_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 5.350e-18
Identity = 89/281 (31.67%), Postives = 114/281 (40.57%), Query Frame = 3 
Query:  570 DGVLSTDDDEMMCCPTGCGTCGGDSCSSLPMSWVQPGESLLLVDESVPEGA--SSGDYCCLSAMDNLTTVCGVDGGVAPCRMPQVFEEKED----------TC--GVDGIVGTAHSGGELCCPLGCDTCGSTGCGEQHISYIYPGDLPWSTTAPDTATTADYCCISAFRDVG-VCGEDGVEPPC--TIPEVE-VTLAPQGDLVDTCGVDGIEGI-ANGDECCPLGCGQCGGTGCGSIDMGYVTPYLEVDPLTATSAEYCCSSAFDTTTPTCGDEGVLPPCY 1355
            DG+   D + ++CCP GCG C G  CS+        G +  L   S   G   SSG+YC              D GVAPC      +              TC  G++GI G     G +CCPLGC  C  +GC               ST       T+  CC    +  G  C + GV P    + P+ +          V TC  DGIEGI  NG  CCPLGCGQC G+GC +            + LT++S   CC     ++   C D GV P  Y
Sbjct:  537 DGIEGIDGNGVVCCPLGCGQCAGSGCSTA-------GAANGLTSSSCCGGGIKSSGNYC-------------DDTGVAPCIYGSAPDADXXXXXXXXXXVGTCNDGIEGIDGN----GVVCCPLGCGQCAGSGC---------------STAGAANGLTSSSCCGGGIKSSGNYCDDTGVAPCIYGSAPDADDXXXXXXXXXVGTCS-DGIEGIDGNGVVCCPLGCGQCVGSGCSTDGAA--------NGLTSSS---CCGGEIKSSGNYCDDTGVAPCIY 766
[Close]
BLAST of mRNA_P-littoralis_Contig86.130.1 vs. uniprot
Match: A0A6H5JC43_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC43_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 4.140e-16
Identity = 77/232 (33.19%), Postives = 98/232 (42.24%), Query Frame = 3 
Query:  837 TC--GVDGIVGTAHSGGELCCPLGCDTCGSTGCGEQHISYIYPGDLPWSTTAPDTATTADYCCISAFRDVGVCGEDGVEPPCTIPEVEVTLAPQGDLVDTC--GVDGIEGIANGDECCPLGCGQCGGTGCGSIDMGYVTPYLEVDPLTATSAEYCCSSAFDTTTPTCGDEGVLPPCYIVPGTPAPVAAATLPLAVISNLTDTCNLPDMAGILDSTGTRCCPQGCGMCGGAGC 1520
            TC  G++GI     + G +CCPL C  CG TGC     ++   G    S        + +YC            ++  E PC I        P     +TC  G++GI+G  NG  CCPLGCGQCGGTGC +                      CC  +   +   C DE    PC I+  +PAP   +  P    SN         + GI D  G  CCP GCG CGGAGC
Sbjct:  192 TCSNGLEGI----DANGVVCCPLACGQCGGTGCNTSGAAFGLDGS---SCCGGGVKASDEYC------------DETNEAPCIIGS---RPTPSPTSANTCSNGLEGIDG--NGVVCCPLGCGQCGGTGCNTSGAA-----------AGLDGSSCCGGSIKASGKYC-DETNDAPC-IIGSSPAP---SPTPSETCSN--------GVEGI-DGNGVVCCPLGCGQCGGAGC 374
[Close]
BLAST of mRNA_P-littoralis_Contig86.130.1 vs. uniprot
Match: A0A6H5K5M2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5M2_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 8.170e-15
Identity = 70/229 (30.57%), Postives = 84/229 (36.68%), Query Frame = 3 
Query:  843 GVDGIVGTAHSGGELCCPLGCDTCGSTGCGEQHISYIYPGDLPWSTTAPDTATTADYCCISAFRDVG-VCGEDGVEPPCTIPEVEVTLAPQGDLVDTCGVDGIEGI-ANGDECCPLGCGQCGGTGCGSIDMGYVTPYLEVDPLTATSAEYCCSSAFDTTTPTCGDEGVLPPCYIVPGTPAPVAAATLPLAVISNLTDTCNLPDMAGILDSTGTRCCPQGCGMCGGAGCG 1523
            G++GI G     G +CCPLGC  C  TGC               ST       ++  CC    +D G  C + GV P C                 TC  DGIEGI  NG  CCPLGCGQCGGTGC S                   +  CC  +  ++   C D G                                  P+    +D  G  CCP GCG CG +GCG
Sbjct:    6 GIEGIDGN----GVVCCPLGCGQCVGTGC---------------STAGAANGLSSGSCCGGEIKDSGNYCDDTGVAP-CIYGSAPEDXXXXX-XXXTCS-DGIEGIDGNGAVCCPLGCGQCGGTGCTSAGAA-----------NGLDSGSCCGGSIKSSGNYCDDTG--------------------------------EAPNDLECIDHKGEICCPLGCGPCGESGCG 169
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig86.130.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
D8LTF3_ECTSI6.800e-12261.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JLD2_9PHAE4.050e-4440.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JG71_9PHAE8.180e-2367.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JYT7_9PHAE2.390e-2131.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FIS5_ECTSI1.260e-2030.19FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
D7G651_ECTSI2.920e-1932.38Mannuronan C-5-epimerase C-terminal n=1 Tax=Ectoca... [more]
D8LDY5_ECTSI1.030e-1846.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L8H5_9PHAE5.350e-1831.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JC43_9PHAE4.140e-1633.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5M2_9PHAE8.170e-1530.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig86contigP-littoralis_Contig86:472573..480719 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FJ68
Preferred nameMTPAP
PFAMsFKBP_C,GOLGA2L5,PAP_assoc
Model size1549
Max annot lvl2759|Eukaryota
KEGG koko:K08342,ko:K16462,ko:K17478,ko:K18060
KEGG Pathwayko04136,ko04138,ko04140,map04136,map04138,map04140
Hectar predicted targeting categorysignal peptide
Exons12
Evalue3.69e-15
EggNOG OGsCOG0086@1|root,KOG4725@1|root,KOG0260@2759|Eukaryota,KOG4725@2759|Eukaryota
EC2.7.7.19
Descriptionimportin-alpha family protein binding
Cds size1332
COG categoryS
BRITEko00000,ko00001,ko01000,ko01002,ko01009,ko03029,ko03036,ko03110,ko04131,ko04812
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig86.130.1prot_P-littoralis_Contig86.130.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig86 472573..480504 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791734.732219-CDS-P-littoralis_Contig86:472572..4726291680791734.732219-CDS-P-littoralis_Contig86:472572..472629Pylaiella littoralis U1_48CDSP-littoralis_Contig86 472573..472629 -
1680791734.747192-CDS-P-littoralis_Contig86:473346..4734711680791734.747192-CDS-P-littoralis_Contig86:473346..473471Pylaiella littoralis U1_48CDSP-littoralis_Contig86 473347..473471 -
1680791734.7605019-CDS-P-littoralis_Contig86:473832..4739151680791734.7605019-CDS-P-littoralis_Contig86:473832..473915Pylaiella littoralis U1_48CDSP-littoralis_Contig86 473833..473915 -
1680791734.7730293-CDS-P-littoralis_Contig86:474214..4743121680791734.7730293-CDS-P-littoralis_Contig86:474214..474312Pylaiella littoralis U1_48CDSP-littoralis_Contig86 474215..474312 -
1680791734.7849007-CDS-P-littoralis_Contig86:474875..4749701680791734.7849007-CDS-P-littoralis_Contig86:474875..474970Pylaiella littoralis U1_48CDSP-littoralis_Contig86 474876..474970 -
1680791734.7950253-CDS-P-littoralis_Contig86:475376..4754581680791734.7950253-CDS-P-littoralis_Contig86:475376..475458Pylaiella littoralis U1_48CDSP-littoralis_Contig86 475377..475458 -
1680791734.8075588-CDS-P-littoralis_Contig86:476242..4763401680791734.8075588-CDS-P-littoralis_Contig86:476242..476340Pylaiella littoralis U1_48CDSP-littoralis_Contig86 476243..476340 -
1680791734.8211074-CDS-P-littoralis_Contig86:477133..4772261680791734.8211074-CDS-P-littoralis_Contig86:477133..477226Pylaiella littoralis U1_48CDSP-littoralis_Contig86 477134..477226 -
1680791734.8336394-CDS-P-littoralis_Contig86:477674..4777581680791734.8336394-CDS-P-littoralis_Contig86:477674..477758Pylaiella littoralis U1_48CDSP-littoralis_Contig86 477675..477758 -
1680791734.849271-CDS-P-littoralis_Contig86:478363..4785611680791734.849271-CDS-P-littoralis_Contig86:478363..478561Pylaiella littoralis U1_48CDSP-littoralis_Contig86 478364..478561 -
1680791734.8606005-CDS-P-littoralis_Contig86:479643..4798591680791734.8606005-CDS-P-littoralis_Contig86:479643..479859Pylaiella littoralis U1_48CDSP-littoralis_Contig86 479644..479859 -
1680791734.8709776-CDS-P-littoralis_Contig86:480401..4805041680791734.8709776-CDS-P-littoralis_Contig86:480401..480504Pylaiella littoralis U1_48CDSP-littoralis_Contig86 480402..480504 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791734.8807058-UTR-P-littoralis_Contig86:480504..4807191680791734.8807058-UTR-P-littoralis_Contig86:480504..480719Pylaiella littoralis U1_48UTRP-littoralis_Contig86 480505..480719 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig86.130.1

>prot_P-littoralis_Contig86.130.1 ID=prot_P-littoralis_Contig86.130.1|Name=mRNA_P-littoralis_Contig86.130.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=444bp
MRPSVFQLLLLGFFHGTSGRELSSTASLDSSVCETSGSSSRYPDCKGIQG
TGNNADICCAEECLCTCGGTSEENAGKECFITQIRASPPAECDGTQNSTE
ACALGPETVEGTNPCVVTDGVLSTDDDEMMCCPTGCGTCGGDSCSSLPMS
WVQPGESLLLVDESVPEGASSGDYCCLSAMDNLTTVCGVDGGVAPCRMPQ
VFEEKEDTCGVDGIVGTAHSGGELCCPLGCDTCGSTGCGEQHISYIYPGD
LPWSTTAPDTATTADYCCISAFRDVGVCGEDGVEPPCTIPEVEVTLAPQG
DLVDTCGVDGIEGIANGDECCPLGCGQCGGTGCGSIDMGYVTPYLEVDPL
TATSAEYCCSSAFDTTTPTCGDEGVLPPCYIVPGTPAPVAAATLPLAVIS
NLTDTCNLPDMAGILDSTGTRCCPQGCGMCGGAGCGSIDMNLIT
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mRNA from alignment at P-littoralis_Contig86:472573..480719-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig86.130.1 ID=mRNA_P-littoralis_Contig86.130.1|Name=mRNA_P-littoralis_Contig86.130.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=8147bp|location=Sequence derived from alignment at P-littoralis_Contig86:472573..480719- (Pylaiella littoralis U1_48)
TTTGCAACTGACCCAGCTCCCTCAACACCTTTACCATACCCGGCACTCCT
CAGTCGTCTTGAAGTGATCATATCGAGGCTCGTGTCACTTCCGCTGCCAT
CTCCCTGCCGATATTTCCATCCTTCGCACCAAGATTGGTGTGGTGTGCGC
GTCCTGTGATTTGTCTCCGATATCGAAGCTCTTCCGTCACTGCGCCGAAA
TTCAAGCTTTAAGACATGAGACCATCCGTGTTCCAGCTGCTCCTGCTAGG
ATTTTTCCACGGCACGTCTGGCCGCGAGCTATCCTCGACGGCCTCGCTAG
ACTCGTCCGTCTGCGAAAGTGAGTGCGCTGCAAGTGTATAGTTGTAGGGG
CCTGTTTGCCCTCTTGCTCGACAAAATGTCACCGAGGAACAACCCACTCG
GTGCAACAAAGTTTGTGTGATTTTGTCCCGCCGCTCCAGCAGCGGTAATG
GCTGTTGGCAGGAACTGATCCGCCGAAGATTGGCTCCGGTAGCCACCGTA
CCTTTGAGTTTGGTGGCAAGCATTTGAGTGCTGCTCCTCTCTGCCGTTCT
GTCAGAGTCAACCGAAGTAGCCTAGACGGGAGGTCATCGCTACATTTTCC
TTTGCGTTGAAGAAACTCGAAACAACGTTGTGTAGTCCACAGACCTGCCG
CTCTGACAAGATCTCGTTGTAATGTGTTTGGACCGTGCTCAAATGCATCA
GCCCCACCAGTACCTTTCACTCTGAACTCGCGAGGGACACTAAGAACGAC
CGTCGACCACCGCCACCACCACGCCCGCCTTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCCCCCCTGCATACAATCATACGGCCACCGTTCTTTCC
TCTCCATCAGCTTCTGGATCCTCATCTCGGTATCCCGATTGCAAGGGCAT
CCAGGGCACCGGAAATAATGCAGACATCTGCTGCGCCGAGGAATGCCTGT
GCACGTGCGGCGGTACTTCCGAGGAGAACGCCGGCAAGGAGTGCTTCATC
ACCCAAATCAGGGCGTCCCCTCCTGCGGAGTGCGATGGGACACAGAATTC
AACCGAGGCATGCGCCCTTGGCCCAGGTACGTGCCGTCGTACGCGTTCAA
CAACTCAAACAGACTTCTATTTTCTTCGCCGCTGAAATTATATTCGGTTT
TCGTCTTCTCTTCGTTTTTACACATGGAATGTTTTTGAAGTTATCGCGGT
TTGAGCCGAGCGAGTTGCCACAATTGCAAAGAGTTGGTACCGTACAGCAG
CTCAGATGTGGCTGCATATAGCAGTTGGAGTGGGGTAGAGGGAGGGAGCT
GAATAGCTCGTGGGCATCAACACGATGTTTCCGTGTCTCGGCACATACCA
GCATGTCTTCATCATATCACTAGTACGTTTCTTCATCGTTTTTTTCGCTT
CTTTCATTCTCTTCTGCCGCCGACAACAACTGAGCCTGCCCGGGCCTAAA
CCATCTCCCCAAGACGTGGAGGTGACCTTCACGAAGGGTGCACTCCCACA
AACGTCTGTCATAACATATCGCTCTCTTCACATTGGCGTCTACGATAAGA
ACTCCGCTCTACTATTGGCTGCGATCCAGGATCGATCCCCGCGACACATA
CCATGAAACTTTCCAAAAAACTTCAAAGAAAAAAGCACAAAGGAAGAAAG
GGCAAAACCACTCGTCGGGGCGACCAAGCAAAGTGCGAATGATTCGAACC
GGATAAACTTTTGATGATGACATCGTGGACTTGGCGAACCCTCACAAACA
CGCGCGAGAGGGAGTGAAGAAAAGGGAATGATTCGAGGCTCACCGGTTGC
CGGTTGGGGTCCGTTTATCTCTGAAAGACTCTTTGTTACAAACACATGAA
TGAACAAAAGCCTCTGAAGGGGGGGGGGTAATGTGGAGGTGACCTTCATA
AACAGATTATTCAAAACGAGGTTGAGCCTTTTGATGAGCTCATCCATCAA
CGCTGACCTCTCCGCGGCTATGGTACCGGAAAGCAAACATTTAATATGGT
AGCTCAGCAAGCCGAAAACCATAACACCAGCATCGTGCATACTCGCAGCA
CCCTTGGTTGGCTCACACACACACACACACACACACACACACACACACAC
ACACACACACACACACACACACACACACACACTTGTTCCCCTCACTCCGC
GCGCACAGAGACCGTCGAGGGCACCAACCCCTGCGTAGTGACCGACGGTG
TTTTGAGTACCGACGACGACGAGATGATGTGCTGCCCCACTGGCTGCGGC
ACGTGCGGTGGTGACTCGTGCAGCTCGTTGCCCATGTCCTGGGTCCAGCC
GGGCGAGAGCCTTCTGTTGGTGGACGAAAGCGTGCCGGAAGGGGCTTCAT
CCGGCGGTGAGCAAGAAATATACGCAAGCCCATCCACCAGAGGGGGTGCA
TACCCTTAATATTTCCGTTTTATTTTTAACCTCATATTGTAACATGCTTG
CGAAAACTGCCAATTTGTTCTAGATCCTCGTGTATACGTATATATCACAC
AGACAGCTGAGTGAGGCGAATGATGAACTAATTTGTGTCCATAAGGTTCT
TGAGACAATTATTCTTACAACATCTGTTTATACAAAAACAGTTTCGACAA
CTTCATGAGACGACATGTATTCTGTGCACAATTGCCTTATCCACACTACT
CTGACGTATGCAGACCGCAAAATTAACCCGGACTGTCTTTCTTTCGACTA
TTTAAGTACGTAGTATCACATTTTTGTAACAAATACTTCGAAGTACAAAC
TAGGAAAGCACTCGCAGAGGGAGCGCGGAATTATTTACTCCGGAGTATGT
ACTTGTACTTCTGTAAAGTAGAAATTGTCTCAAAAATGTTTGCCTACCTG
TGTGTTTGTTCCTTCCCTTTCTGACCACACGACTTACCACGTATTTTTCT
CCTCTCCGTGTGGGACCATATTCCTGCTGCTCCCCTTTTCCCCCCCATCC
AAAAAAAAAAGACTACTGCTGCCTCAGCGCGATGGATAACCTCACCACGG
TTTGCGGCGTCGACGGAGGCGTAGCTCCGTGCCGTATGCCTCAGGGTGAG
AGTAAGATGCTGCCATGATATACCCTTTGACCTACTTGTAGTACTGGTGC
GGCGGAGCGTAGCGGTTTTGACACTGCGTTGGGTGTTGGTCTTGTACTAC
TCTCTGCCTGATCATTTACTTCATTATTTTGATTTGTGTACAGGGGTTGC
GTCTCTTTTCGAAATAAGAAGCATCTCCGCTTTTCCTCGTGTTGCCCACC
GGCCGTGGCGGCTAGTTCTGCGGTATAATTTTTGGTACCAGCGAAGTAGG
GAGTGTAGGGAGTGTTTTACGTTTCATTACAGTCATAAACTCTTCATTTC
TACTCTAAAAACACATACCACATGTACATTTTAAAAAATAATCCGCTCGG
AACACTCACCCTCCTCTCCATACCGCCACTGCTGCTGCTGGTCCTGGTTC
TGGTTCTGGTTCTGGTTCTGGTTCTGGTTCTGCCAACGCCCAGTATTCGA
AGAAAAAGAGGACACGTGCGGTGTGGACGGCATCGTGGGTACTGCTCACT
CTGGCGGGGAGCTGTGCTGCCCCCTAGGCTGCGATAGTAAGTGCCGGTGC
CTTCCCGTGTACCTCCTCGCCAAGAACAAAAAGCAGACTCAGCGATAAGT
GCTCCTTCGCGGTATTGTCTACACAGTGCGATAGGAGTGTCGAGCTTTGT
TTACGGCGTTACATCCATATCCTTCCACGAGAGCATCTTTTTCATCTCCG
TCTCTCTTTCCATCCCTGGTGCAACACATCATCACCGACGTCTTGACGAA
GCTCATCGGTCCCTTCCCCAGCAGCTCGTTGGTTATCTCCTCGAGAAGCA
TCGGTCGTGGATTAGTACCAACAATACAGTTCACGTCGATGAAATACAGA
AATGCGCAAGGAAGGAGAAACAAACAATACCTTCTTTTATTTGCTCTCCT
GCTGCAAGACAAATAATACCACAGCCTGGTTGCCTGACCACGCAAGTATT
ACATCTTGAGGGTCGGACGACTAGGTCGGAATGTGTAGGGGAGATACACA
GGTCTCACAGTCAAAGCATGCGAAGACGGCAGCAGCAGCACGGCCACCAC
CCCGAACACCAAAAAGTTTCAGTACCCACACTACCAACAACCGAAGAACG
GCACCCCCGGACCCGAAATAAAAATAGAGTTGAAAGGACTGTTGACCATG
AAACACACACTTTTTACAACAACAAAAAGAACAACACACCAAGTGGATGC
ACCTGGATCTGTTGTTTTATTTTTGAATTTCGAATGTAAAAGTACTAATT
TGTTGATTTATTCTCTCTCCCCGTTTGTTCCGCTACTCCCCCGAAAATTC
CTTGAAAAACAAAACGCTTGGACCACCAGCATGCGGGTCTACCGGATGCG
GCGAACAGCACATCTCGTACATCTACCCCGGTGACCTCCCATGGAGCACG
ACTGCCCCTGACACTGCAACGACTGCGGTGAGATTTAGCTAGCACGAAGG
ACGCACACAAACGTTGAAGTGAAGTACTCAACGCCTTCGGCGAGGTTGAG
CTAGAGTAGAATGCAGGACGTGTATACACTATTTCAATTCCAAGTGTGTA
TATACGATGCAGGTGTTCTAAAAAAGCGTAGCCACGCCACACTTTCAGCG
TAGAGCTTCGAAGGACTCAGTCGAATGTTTTAGTTCATGCGTGACCACTT
GATCACATAAACCTGCGACTTCGAGGCAATTCGAAACTTCAAGCGCTGAG
GTCGGCACTTTTTAGTTTGCTTGCTCGATCCTGTGCATCCTTTGGTCTGG
CTTTTCGTTCACGTTGGGAGAGCAGCACACAAGGGGCCATTTTGGTTTGT
TGGCACAACGAACTCGGTTTACCCGTTAGGTTATCCACTTGCGCCGGCGT
CGTTACTTTTCGCTCTAGCGCGCGTGGAGAGAGAAAGGAACCGTTGAAGC
TCCGTGCAATTATTTTGACTGCGGAGATCATCACAATACAATCCTCGCCG
CCACCACCACCATGATCACAACCGTAAACAAATGCCGCACGAGTAAGAAG
CCACTAAGAATACACCTATCCACAACGAACGTCGAAGGCCCCTCAAAGAC
TTGGAACATGATTCGCCGACCCCCCCCCCCCCCCATCTTCTCCCTTCCTT
CCTACCAACGCTGTGCCGACCCCGCTGCATGATTGTGATGCTGCTTCCTT
GCCTCTTGGCCGCGTCGCTACTCTTGTCTGCTGACATCGTTATGCTCCTT
CGCCTTCAAAGGACTACTGCTGCATCTCGGCCTTCAGAGACGTCGGCGTC
TGCGGAGAGGACGGCGTCGAACCTCCCTGCACCATTCCCGAGGGTAATTT
TTCACCATCACCACCATGCTCTCTTTTGGGCTAGGGTTCCAGTTCCGGTT
CGGTTCGGTTCGGGTCGCAGTTGCTACGTTCACCGTCGGGCGTGTGTCAT
GTTGCCGTCTGTCCCAGGTTTCCGTGCTGCGCTGGGCTGTGCTATGCAGT
GCCGTTTGCCTTACATGCTGTGGCACTTGCGGTAGACGAAGTTTGTACTT
TTCTGTCCGAAAGAGTGCCGAACGGGTTACCCGGGATCATTCGTGAGTGC
TTATTTTTGTGTGATAATATATGCGGTGTATTTTTCTCGAGGGATCACCT
CGTCCCCTACCTCTCCACCCAGAAGGCACACTTTTTTCCTCTTCCCCTTC
GTCCCCTCCGTCCCCTCCTCCCTCTACCCCCTCCCAAAACAAAATCCAGT
TGAGGTAACCCTAGCCCCTCAAGGCGACCTTGTTGACACCTGCGGCGTGG
ACGGCATTGAGGGGATCGCCAACGGCGACGAGTGCTGCCCCCTGGTAAGT
GTCGGCCTCGTTACTGTATTCTCGTATCCGGTGTTGTTATACGATATATT
TTTTCTTTCCTGCCTTCTCGACCGTTGTATGTATATCCCATGTTGTACTG
TGATGTTATGCTGTGTACCAAACTGACCCAGACCTACATACATACATACA
TACATACATACTTCGAAGTACATGCATATATCGTAACACCTCGGGGGGGG
AGAGAGAGAGAGAGAGAGAGAGGGAACAAATCGCCCCGACAAAACAAAAA
ACATTACAGGTGTGAACAAAAAAATGCACTTGTGAACAGCAGCAACAATA
TTTTAGTGATAGGTGCTCTGTCGTTCCATTTACCACTGTGTCATTGCGTG
TAAACGAATCAAACGAACAACTTTTACTGCTCCCTTTCTCTCTACCCAAC
ACCAAACGAAAACGAAGGGAACCAACCATTTTATTTCTGTTCGGTGGAGC
ACTTCTCTCCTGACCCCCCCCTCCCCCTCCCTCCCCCCCGGGCCCTCCCT
CCCCCCCGCCCCGCCGCCGTCCATTCCGTCGATCAACTCTTCTAATGACT
ACCGTAGGGCTGTGGTCAATGCGGCGGTACCGGGTGCGGGTCGATCGACA
TGGGCTACGTCACGCCGTACCTTGAGGTCGATCCTCTCACCGCCACTTCT
GCCGAGTGAGTGTTCTATGCTTCCGTCCGACGAAGGAAAAGGAAACACAC
GCGATGAAAGTTCGTACAAGCAGTCGACGAGACGTCAGACGTGTGATATC
ATACCGCATTTACAGCATGATTGCTGTCGTTTCAACCCTCCCTTCCTCCC
TCCCTCCCTCCTTTACTTCCTCCTTCCTCCATCCCTTCTCCCGAAATGTG
TGCGCCTCATATGATACCAAAATACAACAACACCACCCGCGAACGATGCT
TTCGTTGCCACCATTAACCGTCGCCACCACCGCCGCCGCCACCATCACCA
CCAGGTACTGCTGTTCTTCAGCGTTCGACACCACGACACCCACCTGCGGA
GATGAAGGGGTGCTTCCCCCGTGCTACATCGTCCCTGGTGGGTGTGAACC
AAGACCCCTTCCCCCCCAAAAAATGCAAATTGGACCTGATTTTCGTTATT
ATTCCTTCCCCATTCAATAAGAATTACCTGGTACTTGTAATATAAACATG
TAGTTACTGCTACATCTGATATGACATGTAAGAACAATCGAATCATATCA
TACTGGCGATTCCTGTCGTCCTGTTGCACTACGCCACCAGAAGTTCCCTT
CTCTGGTAAAGAAACGACATCATCGCCTACGTAGCCTTTCCTTTATTTCC
CCTCCCCTCCCCTCCCCCCCTCTTCTCTCCTCTCCTCTCACAACAACAGC
CCTTCAATATGTCCCCATTGTTCTACCCGCCCCCCGCATGCCCTCCAGGT
ACACCGGCGCCAGTGGCAGCAGCCACCCTTCCCCTCGCCGTCATCTCCAA
CCTGACGGACACCTGCAACCTGCCAGACATGGCTGGTATCCTCGACAGCA
CAGGAACTCGCTGCTGCCCCCAGGTACTGCCATGGTATCATATGGTGTGT
TTTGTTGTCGTCTTTGCTGCCTGCCCCTTTTGTTTGTTTTTTTTTCCTGT
TTTTTTTTTTTTAAGGGGAGGGGGGGGGATAAACACATTCAAAGTAAATC
GAAGTTCATATGTACACCATGTACGACCGGTATTATTAGTAAAGAAAGGC
CAGGTAGTACGGTACAGCAGTAGGCGTTGCCCCCGTTCTCTTGTTTATTT
CCATTTTTTGTTCCACTTATTGTTGCCATTGAGCCACGTAGCACTAAAAA
TACAGTATGAGCAATGTTCACAAGAAGTTTGATGGACAATAAATTGAGTT
ATTTCTTTTTGTTTGTGAAAAATCTGTTGTAAAACGAGCTAAATACGGGA
TCAAAATGGGTGATTGTAGTTGACATGTGTCTCGAATTTTGAACTGACAA
GAGTTCGGACGTTCCTTGTAAAACTGGTGTATTTCAAGAGGTGGGTGTGG
AATGTGCTGTGGGCAACCCTATATGTGTGTCATACAACAAATGATTCTTT
ACTCAATAAATGTGGATATTGAGGCGATATCTTGCTTGTCTGCTGTGCTA
CAAGGCTGTGGCATGTGTGGTGCGTGCCCAACTACATTCATTCGTGAACA
AAATAAGGCATTTTACTTACTGACATGGACGGCATCGAACCAATACCTGG
TACTTCGAAGTAAAAAACTGCATTCTCTGTTGTGTTTCAGGGCTGTGGAA
TGTGCGGCGGTGCCGGGTGCGGATCGATCGACATGAACTTGATAACG
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Coding sequence (CDS) from alignment at P-littoralis_Contig86:472573..480719-

>mRNA_P-littoralis_Contig86.130.1 ID=mRNA_P-littoralis_Contig86.130.1|Name=mRNA_P-littoralis_Contig86.130.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1332bp|location=Sequence derived from alignment at P-littoralis_Contig86:472573..480719- (Pylaiella littoralis U1_48)
ATGAGACCATCCGTGTTCCAGCTGCTCCTGCTAGGATTTTTCCACGGCAC
GTCTGGCCGCGAGCTATCCTCGACGGCCTCGCTAGACTCGTCCGTCTGCG
AAACTTCTGGATCCTCATCTCGGTATCCCGATTGCAAGGGCATCCAGGGC
ACCGGAAATAATGCAGACATCTGCTGCGCCGAGGAATGCCTGTGCACGTG
CGGCGGTACTTCCGAGGAGAACGCCGGCAAGGAGTGCTTCATCACCCAAA
TCAGGGCGTCCCCTCCTGCGGAGTGCGATGGGACACAGAATTCAACCGAG
GCATGCGCCCTTGGCCCAGAGACCGTCGAGGGCACCAACCCCTGCGTAGT
GACCGACGGTGTTTTGAGTACCGACGACGACGAGATGATGTGCTGCCCCA
CTGGCTGCGGCACGTGCGGTGGTGACTCGTGCAGCTCGTTGCCCATGTCC
TGGGTCCAGCCGGGCGAGAGCCTTCTGTTGGTGGACGAAAGCGTGCCGGA
AGGGGCTTCATCCGGCGACTACTGCTGCCTCAGCGCGATGGATAACCTCA
CCACGGTTTGCGGCGTCGACGGAGGCGTAGCTCCGTGCCGTATGCCTCAG
GTATTCGAAGAAAAAGAGGACACGTGCGGTGTGGACGGCATCGTGGGTAC
TGCTCACTCTGGCGGGGAGCTGTGCTGCCCCCTAGGCTGCGATACATGCG
GGTCTACCGGATGCGGCGAACAGCACATCTCGTACATCTACCCCGGTGAC
CTCCCATGGAGCACGACTGCCCCTGACACTGCAACGACTGCGGACTACTG
CTGCATCTCGGCCTTCAGAGACGTCGGCGTCTGCGGAGAGGACGGCGTCG
AACCTCCCTGCACCATTCCCGAGGTTGAGGTAACCCTAGCCCCTCAAGGC
GACCTTGTTGACACCTGCGGCGTGGACGGCATTGAGGGGATCGCCAACGG
CGACGAGTGCTGCCCCCTGGGCTGTGGTCAATGCGGCGGTACCGGGTGCG
GGTCGATCGACATGGGCTACGTCACGCCGTACCTTGAGGTCGATCCTCTC
ACCGCCACTTCTGCCGAGTACTGCTGTTCTTCAGCGTTCGACACCACGAC
ACCCACCTGCGGAGATGAAGGGGTGCTTCCCCCGTGCTACATCGTCCCTG
GTACACCGGCGCCAGTGGCAGCAGCCACCCTTCCCCTCGCCGTCATCTCC
AACCTGACGGACACCTGCAACCTGCCAGACATGGCTGGTATCCTCGACAG
CACAGGAACTCGCTGCTGCCCCCAGGGCTGTGGAATGTGCGGCGGTGCCG
GGTGCGGATCGATCGACATGAACTTGATAACG
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