mRNA_P-littoralis_Contig86.120.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig86.120.1
Unique NamemRNA_P-littoralis_Contig86.120.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig86.120.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig86contigP-littoralis_Contig86:401326..401839 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size514
Hectar predicted targeting categoryother localisation
Exons1
Cds size411
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791729.269199-UTR-P-littoralis_Contig86:401325..4013461680791729.269199-UTR-P-littoralis_Contig86:401325..401346Pylaiella littoralis U1_48UTRP-littoralis_Contig86 401326..401346 +
1680791729.28921-UTR-P-littoralis_Contig86:401757..4018391680791729.28921-UTR-P-littoralis_Contig86:401757..401839Pylaiella littoralis U1_48UTRP-littoralis_Contig86 401758..401839 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791729.279874-CDS-P-littoralis_Contig86:401346..4017571680791729.279874-CDS-P-littoralis_Contig86:401346..401757Pylaiella littoralis U1_48CDSP-littoralis_Contig86 401347..401757 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig86.120.1prot_P-littoralis_Contig86.120.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig86 401347..401757 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig86.120.1

>prot_P-littoralis_Contig86.120.1 ID=prot_P-littoralis_Contig86.120.1|Name=mRNA_P-littoralis_Contig86.120.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=137bp
MDSKCLQICLKSVDGPPTRRRAVGWVNRKNETLVTAAQSILKSGRDLPRA
SARRYLMTKPLYPSKNRSSTRNHMVRNTSKYLICSPVQQPPPAPLRAMIP
RLVCVNSATSQTNTQPCQGQHVRVCAMLLLILTLAH*
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mRNA from alignment at P-littoralis_Contig86:401326..401839+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig86.120.1 ID=mRNA_P-littoralis_Contig86.120.1|Name=mRNA_P-littoralis_Contig86.120.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=514bp|location=Sequence derived from alignment at P-littoralis_Contig86:401326..401839+ (Pylaiella littoralis U1_48)
ACGACCCTCATGTGAGTTGAAATGGACAGTAAATGTTTGCAGATATGCTT
GAAAAGTGTGGATGGCCCGCCAACCCGTCGACGCGCCGTTGGTTGGGTGA
ACAGAAAAAACGAAACTCTGGTGACTGCGGCACAATCAATTCTAAAATCA
GGCCGTGATTTACCTCGAGCGAGTGCGAGACGGTACCTCATGACAAAACC
TCTGTATCCGTCAAAAAATAGGAGCAGTACACGCAATCACATGGTACGAA
ATACTTCGAAGTACTTGATTTGTAGTCCAGTTCAACAGCCACCTCCGGCT
CCTCTGCGAGCGATGATCCCACGCTTGGTGTGCGTAAACTCTGCCACGTC
CCAGACAAATACACAACCTTGCCAGGGACAACACGTACGTGTGTGTGCTA
TGTTGTTGTTGATTCTCACATTAGCTCACTAACGCCGCAGTCTAGCCCGC
GGTCACAAACCAGGCACATATCGTGCTAAAGGAAAAAAATAAAAATAACA
TATATGGACTATGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig86:401326..401839+

>mRNA_P-littoralis_Contig86.120.1 ID=mRNA_P-littoralis_Contig86.120.1|Name=mRNA_P-littoralis_Contig86.120.1|organism=Pylaiella littoralis U1_48|type=CDS|length=411bp|location=Sequence derived from alignment at P-littoralis_Contig86:401326..401839+ (Pylaiella littoralis U1_48)
ATGGACAGTAAATGTTTGCAGATATGCTTGAAAAGTGTGGATGGCCCGCC
AACCCGTCGACGCGCCGTTGGTTGGGTGAACAGAAAAAACGAAACTCTGG
TGACTGCGGCACAATCAATTCTAAAATCAGGCCGTGATTTACCTCGAGCG
AGTGCGAGACGGTACCTCATGACAAAACCTCTGTATCCGTCAAAAAATAG
GAGCAGTACACGCAATCACATGGTACGAAATACTTCGAAGTACTTGATTT
GTAGTCCAGTTCAACAGCCACCTCCGGCTCCTCTGCGAGCGATGATCCCA
CGCTTGGTGTGCGTAAACTCTGCCACGTCCCAGACAAATACACAACCTTG
CCAGGGACAACACGTACGTGTGTGTGCTATGTTGTTGTTGATTCTCACAT
TAGCTCACTAA
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