mRNA_P-littoralis_Contig859.9.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig859.9.1
Unique NamemRNA_P-littoralis_Contig859.9.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig859.9.1 vs. uniprot
Match: D8LLZ8_ECTSI (4Fe-4S ferredoxin, iron-sulfur binding n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLZ8_ECTSI)

HSP 1 Score: 137 bits (344), Expect = 3.050e-35
Identity = 79/136 (58.09%), Postives = 88/136 (64.71%), Query Frame = 1 
Query:    7 ALPFGEGQHFVQLAGGTNDRTAEKLREVGLIGGDGGPGRLLVEGKG------------------DHGGDE-------QQQQKRVGGVAYGGYARKVVGRALDRLPSDGAGHVEDYPDVLSAALKEASLLVGGLKRP 339
            ALPFGEGQHFVQLAGGTNDRTA +LRE+GLIG D   G                          DH           Q+ ++RVGGVAYGGYARK VGRALDRLP  GAG VED+P+VLSAAL+EASLLV GLK+P
Sbjct:  406 ALPFGEGQHFVQLAGGTNDRTAHRLREMGLIGHDYDGGXXXXXXXXXXXXXXXSSDCRSQNRSQDHXXXXXXXXXXWQESRRRVGGVAYGGYARKTVGRALDRLPGKGAGRVEDHPEVLSAALREASLLVRGLKQP 541
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BLAST of mRNA_P-littoralis_Contig859.9.1 vs. uniprot
Match: A0A843WFQ0_COLES (LdpA_C domain-containing protein n=1 Tax=Colocasia esculenta TaxID=4460 RepID=A0A843WFQ0_COLES)

HSP 1 Score: 80.9 bits (198), Expect = 7.080e-16
Identity = 50/102 (49.02%), Postives = 63/102 (61.76%), Query Frame = 1 
Query:   34 FVQLAGGTNDRTAEKLREVGLIGGDGGPGRLLVEGKGDHGGDEQQQQKRVGGVAYGGYARKVVGRALDRLPSD-GAGHVEDYPDVLSAALKEASLLVGGLKR 336
            F+QLAGGTN  T + L++VGL      P R   EGK          Q  +GGVAYGGYARKVVG+ L++L +  G   +EDYP+ L  AL+EA  LVG +KR
Sbjct:  137 FLQLAGGTNSHTVDCLKKVGLFQTWAIPDR--TEGKASFTASNGSLQALIGGVAYGGYARKVVGQVLNQLSTQHGRIQIEDYPEHLLQALREALSLVGPVKR 236
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BLAST of mRNA_P-littoralis_Contig859.9.1 vs. uniprot
Match: UPI0018ADD872 (uncharacterized protein LOC120263025 isoform X1 n=4 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI0018ADD872)

HSP 1 Score: 81.3 bits (199), Expect = 2.500e-15
Identity = 46/101 (45.54%), Postives = 59/101 (58.42%), Query Frame = 1 
Query:   34 FVQLAGGTNDRTAEKLREVGLIGGDGGPGRLLVEGKGDHGGDEQQQQKRVGGVAYGGYARKVVGRALDRLPSD-GAGHVEDYPDVLSAALKEASLLVGGLK 333
            F QLAGGTN  T + LR+VGL              K D           +GG+AYGGYARK++GR L R+PS  G  H+EDYP+++  A+KEA  LVG +K
Sbjct:  318 FYQLAGGTNAHTIDSLRKVGLF-----------RAKND----PADSNALIGGIAYGGYARKIIGRVLRRIPSKHGHAHIEDYPELMLDAIKEAFNLVGPVK 403
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BLAST of mRNA_P-littoralis_Contig859.9.1 vs. uniprot
Match: UPI00077554B4 (uncharacterized protein LOC4337868 isoform X2 n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=UPI00077554B4)

HSP 1 Score: 79.7 bits (195), Expect = 6.980e-15
Identity = 47/101 (46.53%), Postives = 59/101 (58.42%), Query Frame = 1 
Query:   34 FVQLAGGTNDRTAEKLREVGLIGGDGGPGRLLVEGKGDHGGDEQQQQKRVGGVAYGGYARKVVGRALDRLPSD-GAGHVEDYPDVLSAALKEASLLVGGLK 333
            F QLAGGTN  T E L++ GL      PG           G    QQ  +GG+AYGGYARK+VGR L ++P+  G   +ED+PD L  AL+EA  LVG +K
Sbjct:  256 FYQLAGGTNSYTIESLKKAGLFQSTTFPGAATS-------GVTDCQQAFIGGIAYGGYARKIVGRVLRKIPAQFGHARIEDHPDYLLEALQEALSLVGPVK 349
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BLAST of mRNA_P-littoralis_Contig859.9.1 vs. uniprot
Match: Q75M00_ORYSJ (Os05g0157300 protein n=13 Tax=Oryza TaxID=4527 RepID=Q75M00_ORYSJ)

HSP 1 Score: 79.7 bits (195), Expect = 9.140e-15
Identity = 47/101 (46.53%), Postives = 59/101 (58.42%), Query Frame = 1 
Query:   34 FVQLAGGTNDRTAEKLREVGLIGGDGGPGRLLVEGKGDHGGDEQQQQKRVGGVAYGGYARKVVGRALDRLPSD-GAGHVEDYPDVLSAALKEASLLVGGLK 333
            F QLAGGTN  T E L++ GL      PG           G    QQ  +GG+AYGGYARK+VGR L ++P+  G   +ED+PD L  AL+EA  LVG +K
Sbjct:  311 FYQLAGGTNSYTIESLKKAGLFQSTTFPGAATS-------GVTDCQQAFIGGIAYGGYARKIVGRVLRKIPAQFGHARIEDHPDYLLEALQEALSLVGPVK 404
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BLAST of mRNA_P-littoralis_Contig859.9.1 vs. uniprot
Match: A0A1U8AU29_NELNU (uncharacterized protein LOC104606445 n=2 Tax=Nelumbo nucifera TaxID=4432 RepID=A0A1U8AU29_NELNU)

HSP 1 Score: 79.0 bits (193), Expect = 1.790e-14
Identity = 47/104 (45.19%), Postives = 60/104 (57.69%), Query Frame = 1 
Query:   34 FVQLAGGTNDRTAEKLREVGLIGGDGGPGRLLVEGKGDHGGDE---QQQQKRVGGVAYGGYARKVVGRALDRLPSD-GAGHVEDYPDVLSAALKEASLLVGGLK 333
            F+Q+AGGTN  T   L++ GL               G+  G+      QQ  +GGVAYGGYARK+VGR L  + S  G  H+EDYP+ +  ALKEA LLVG +K
Sbjct:  321 FLQIAGGTNSHTVSGLKKAGLF--------QTTSISGNWRGEMFTVNSQQALIGGVAYGGYARKIVGRVLAEMQSHHGLAHIEDYPNYVFKALKEALLLVGTVK 416
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BLAST of mRNA_P-littoralis_Contig859.9.1 vs. uniprot
Match: A0A368S1U1_SETIT (Uncharacterized protein n=2 Tax=Setaria italica TaxID=4555 RepID=A0A368S1U1_SETIT)

HSP 1 Score: 78.6 bits (192), Expect = 1.820e-14
Identity = 45/101 (44.55%), Postives = 60/101 (59.41%), Query Frame = 1 
Query:   34 FVQLAGGTNDRTAEKLREVGLIGGDGGPGRLLVEGKGDHGGDEQQQQKRVGGVAYGGYARKVVGRALDRLPSD-GAGHVEDYPDVLSAALKEASLLVGGLK 333
            F QLAGGTN  T + L++ GL      PG    E           QQ  +GG+AYGGYARK++GR L ++P+  G  H+ED+PD L  AL++A  LVG +K
Sbjct:  254 FYQLAGGTNSYTIDCLKKAGLFQSMTFPGTTTSE-------TISSQQALIGGIAYGGYARKIIGRTLRKIPAQFGRVHIEDHPDHLLEALQDALSLVGPVK 347
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BLAST of mRNA_P-littoralis_Contig859.9.1 vs. uniprot
Match: K3Y7L9_SETIT (Uncharacterized protein n=5 Tax=Setaria TaxID=4554 RepID=K3Y7L9_SETIT)

HSP 1 Score: 78.6 bits (192), Expect = 2.400e-14
Identity = 45/101 (44.55%), Postives = 60/101 (59.41%), Query Frame = 1 
Query:   34 FVQLAGGTNDRTAEKLREVGLIGGDGGPGRLLVEGKGDHGGDEQQQQKRVGGVAYGGYARKVVGRALDRLPSD-GAGHVEDYPDVLSAALKEASLLVGGLK 333
            F QLAGGTN  T + L++ GL      PG    E           QQ  +GG+AYGGYARK++GR L ++P+  G  H+ED+PD L  AL++A  LVG +K
Sbjct:  316 FYQLAGGTNSYTIDCLKKAGLFQSMTFPGTTTSE-------TISSQQALIGGIAYGGYARKIIGRTLRKIPAQFGRVHIEDHPDHLLEALQDALSLVGPVK 409
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BLAST of mRNA_P-littoralis_Contig859.9.1 vs. uniprot
Match: A0A5P1FKA3_ASPOF (Uncharacterized protein n=3 Tax=Asparagus officinalis TaxID=4686 RepID=A0A5P1FKA3_ASPOF)

HSP 1 Score: 77.8 bits (190), Expect = 3.240e-14
Identity = 46/101 (45.54%), Postives = 61/101 (60.40%), Query Frame = 1 
Query:   34 FVQLAGGTNDRTAEKLREVGLIGGDGGPGRLLVEGKGDHGGDEQQQQKRVGGVAYGGYARKVVGRALDRLPSD-GAGHVEDYPDVLSAALKEASLLVGGLK 333
            F QLAGGTN +T + L+ +GL      PG L   G+         QQ  +GG+AYGGYARK+VGR L R+ +  G   +ED+P+ L  AL+EA  LVG +K
Sbjct:  242 FYQLAGGTNSQTVDSLKSMGLFKAMTIPGHL--RGQAAVATSASSQQALIGGIAYGGYARKIVGRVLSRMVTKHGLLQIEDHPEFLLKALREALKLVGPVK 340
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BLAST of mRNA_P-littoralis_Contig859.9.1 vs. uniprot
Match: A0A4S8IF99_MUSBA (LdpA_C domain-containing protein n=1 Tax=Musa balbisiana TaxID=52838 RepID=A0A4S8IF99_MUSBA)

HSP 1 Score: 73.6 bits (179), Expect = 3.270e-14
Identity = 42/108 (38.89%), Postives = 63/108 (58.33%), Query Frame = 1 
Query:   25 GQHFVQLAGGTNDRTAEKLREVGLIGGDGGPGRLLVEGKGDHGGDEQQQ----QKRVGGVAYGGYARKVVGRALDRLPSD-GAGHVEDYPDVLSAALKEASLLVGGLK 333
            G  F QLAGG+N  T + L++ GL         + ++G      +E +Q    Q  +GG+AYGGYARK+VG+ L ++P+  G   +ED+PD L  A+K A  L+G +K
Sbjct:    7 GLGFYQLAGGSNAFTVKSLKKQGLF------QSMTIDGNSLEKSNEDKQARPEQPYIGGIAYGGYARKIVGKILHKMPTQHGHASIEDHPDYLMEAIKAALTLIGPVK 108
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig859.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLZ8_ECTSI3.050e-3558.094Fe-4S ferredoxin, iron-sulfur binding n=1 Tax=Ect... [more]
A0A843WFQ0_COLES7.080e-1649.02LdpA_C domain-containing protein n=1 Tax=Colocasia... [more]
UPI0018ADD8722.500e-1545.54uncharacterized protein LOC120263025 isoform X1 n=... [more]
UPI00077554B46.980e-1546.53uncharacterized protein LOC4337868 isoform X2 n=1 ... [more]
Q75M00_ORYSJ9.140e-1546.53Os05g0157300 protein n=13 Tax=Oryza TaxID=4527 Rep... [more]
A0A1U8AU29_NELNU1.790e-1445.19uncharacterized protein LOC104606445 n=2 Tax=Nelum... [more]
A0A368S1U1_SETIT1.820e-1444.55Uncharacterized protein n=2 Tax=Setaria italica Ta... [more]
K3Y7L9_SETIT2.400e-1444.55Uncharacterized protein n=5 Tax=Setaria TaxID=4554... [more]
A0A5P1FKA3_ASPOF3.240e-1445.54Uncharacterized protein n=3 Tax=Asparagus officina... [more]
A0A4S8IF99_MUSBA3.270e-1438.89LdpA_C domain-containing protein n=1 Tax=Musa balb... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig859contigP-littoralis_Contig859:28229..31165 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LLZ8
PFAMsFer4,Fer4_9,LdpA_C
Model size422
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.66e-36
EggNOG OGsCOG1142@1|root,2QU4W@2759|Eukaryota
DescriptionIron-Sulfur binding protein C terminal
Cds size345
COG categoryC
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791728.0931957-UTR-P-littoralis_Contig859:28228..283051680791728.0931957-UTR-P-littoralis_Contig859:28228..28305Pylaiella littoralis U1_48UTRP-littoralis_Contig859 28229..28305 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791728.1075575-CDS-P-littoralis_Contig859:28305..285151680791728.1075575-CDS-P-littoralis_Contig859:28305..28515Pylaiella littoralis U1_48CDSP-littoralis_Contig859 28306..28515 -
1680791728.1217835-CDS-P-littoralis_Contig859:31030..311651680791728.1217835-CDS-P-littoralis_Contig859:31030..31165Pylaiella littoralis U1_48CDSP-littoralis_Contig859 31031..31165 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig859.9.1prot_P-littoralis_Contig859.9.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig859 28306..31165 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig859.9.1

>prot_P-littoralis_Contig859.9.1 ID=prot_P-littoralis_Contig859.9.1|Name=mRNA_P-littoralis_Contig859.9.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=115bp
VTALPFGEGQHFVQLAGGTNDRTAEKLREVGLIGGDGGPGRLLVEGKGDH
GGDEQQQQKRVGGVAYGGYARKVVGRALDRLPSDGAGHVEDYPDVLSAAL
KEASLLVGGLKRPL*
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mRNA from alignment at P-littoralis_Contig859:28229..31165-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig859.9.1 ID=mRNA_P-littoralis_Contig859.9.1|Name=mRNA_P-littoralis_Contig859.9.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2937bp|location=Sequence derived from alignment at P-littoralis_Contig859:28229..31165- (Pylaiella littoralis U1_48)
GTGACAGCCCTGCCCTTCGGCGAAGGCCAGCACTTCGTCCAACTGGCCGG
GGGCACCAACGATCGGACGGCCGAGAAGCTGCGGGAGGTCGGCCTCATCG
GGGGAGACGGCGGACCTGGCCGACTACTCGTGGAGGTGAGCCGTATATTT
GTCTGTCACCCCCTGGTGTGTTGGTACAAGCATGCGCGCCGAGACCGTGT
CCTGCTGGCTGCTGCACTGGTGATATGTATGCCATATGAGAGACATGCTG
ACGACGAGGCTCATAACCTGCTGGTACTTTGGGTCTGCCTACTCAACTCT
GAGGTACTGCAGATGTGGCAGCTGGTTCCTTTTCGCCTTGTTCTTGGTGT
TTGTTGCGTTTGCTCTCCGAGGGCCAACGGCGTGTTGCCCATGTTGGCAT
CGTGGAGTGATTTACAACAAGGCAAGCCTCGTATCGTAAGCTGCTGAAAA
ATTCGGGGAATGCTTCGCAGCTCTGTCGATGTGGCGTCAGCTATGTGTGT
GTGGCAGAAGCTCTCATGTTTACGTGGCTGAAAATATACCAGGTACACGT
GAGTATGTGTGTGTTTCATCCCGTTTATTCTGGGCACCGGTCTACACCTT
TCGTTCTGAAGTGGGTGCACCAGCCGGGGTCACACAGAAGGGACAGGTCA
CGCCCGAGCTTTTTTTTTTTATTTTGTTTGTTTTTATTGCCCACGCCTTT
CCTCCTGCGGTACTTGCGTTTGGTTTTTTATGCGAGTCGGGTTCAGCAAT
CCCTCCCCTCCGTCTGCTGCTCACGAATGAATTGCTTTTGTTGACATGGA
AAATATAATGGTTTTAGTATTGGCGCTCCCCTGTGGGTGGTCGAAATACC
CATACTAGGACATTTCAACAGAGAAGATGCCCTTTGAATCCTTTCGAGCA
GCGGGCAGGAGACTCTTGGGGGTGTCCCGAAGAACTTCGAGGGGGAGGGT
GGGGTCCGCCAGTCCCGAAATACGTTGGGCGAGTGAGAGAAGGGAGACCA
GCGTCATTTCGGGGTTGCCAATGAATATTGACCGCGATGGCGACTCGAGT
TAAAACGACATATCATACGATACTCTTATCGCGGGTGGGGTGGAGAACCT
CGGCTGCGCTCGAGGGTTCATCTCGATCGTGTGTTTCTGATCAGGCAACC
ACTGATGCATTTTATGCAGACGTTAGTACGCCCACCCGTGGCTTGCCTCT
AGAGGTCTACACCTTTCGGCGTGTGCGGGCGCACCACTAGCCGGGGTCAT
GCAGAGGGGCAAGGTCAACGCAAGAGTTTCTTATTTTTTACGAAGTATTT
GTTTCCTTGCTTCTTCTTCGTTCTTCTGCGGTGCTTGCCGTCCCTTATAA
GCCCTCGTGGATTTTTTTTTTTATTATCCCCAAGACAAATTTCGTTAACT
CTATTCACCAAAAATTCTCGCTACTCCATTCCTTGGGTTTGCGTGAGAAA
ACCCGGATCGGCTTTCGGTCTTGCGACCTGCTTCGTGGGTGTTATTTGGC
TTCGAGGTTACCCACTGAACGAACCACTGGGCGGAAACGATGCACCTTTA
AACGATAGTTCCTGGTTTCATGCCAACAGTACTAACGAGGTATGGCACAA
GGTACCGAAGTTCGTCCGCCCCCCGTCAAGCGACGGGTCTTGAGATAGAA
ACCTTATTTAAAAACAACCCTCCGTGCAACTCGCTTGGCGCCTGGCGTTG
CAGCACACCAGGTACTTCGTATATGATACGCCTGCGTTGTCGGGAAAGGC
CCCCAAAGTACTTCGTCCCCGCTGTGTATGTTTTTTTTCGGGGGGGGAGG
GGGGATGCGAGGGTCGACGCGTAGTATTCGCAACTATGTATTTACATACG
GCCATGCATTTTCATGTTGTCGCTTGTTGTTCCTTCTCACACACCATGAG
CTCGCCGCCAAAGCTCGGCAATCGGTCTCACAAACACAAAATCAGGCACA
TGCCCGTGCTAGGAGGACGGTTGAATTCAAAGCGAGATAAAAGAAAGGTC
ACGAACGCAAAAGGGAAAATTGAAGAACAGGGGATAGATGTCATACCGCC
CAACGGGGCGGGGGAGTGTCTCCTGTTGTGTGGCCAAAACACGACAAAAT
ATGGAAATTCAGATCCGAAAAAAATTAAGAACAAAACAAATTATGTGCTC
GAGAGATGAAAAAAAAACAGGTCTCGAAGAAAGGAGATATGGCGGCAGTG
TGTGTGTGTTGTCATCCCTTTAATTGGACGCCACTCTACACCTTTCGGGT
AGGTAGACGCTCCAACCGGGGTCACACAGTAGGAAGTCATCACATAATTT
TTTTTTAATTTATTTATTTTCTTTTTTTCTCGCGAGAAAGGGTACAGCCA
TCCCTTTCCCTCGTCGACACTTCGAATTTTGTTTACTCACGAATTAATCG
TTTTCCTCCCTCACGCATGACATGAGAAGAGTTACGGATCGTGTTACTGC
ACCGGGATTCGACCTCAAGAGTAAGTGTCAGAGGATTTCGGGGATAATCA
ACTGAACCACCGGGACGACCGGTTGTACGATAAAAAAAAGAAAACGAAAA
ATAGATTGAAAGACATAATACGAAAAAATATCAGGTATGTAACGTTGACC
CCCCGCCCCGCCCCCGCGCGCGCTCGCTCGCTCGCTGTTGCTCTTCACAG
GGCAAGGGGGATCACGGTGGTGACGAGCAACAACAACAGAAACGGGTAGG
AGGTGTAGCGTACGGGGGGTATGCGCGGAAGGTCGTGGGCCGCGCGCTGG
ACCGTCTCCCCAGCGACGGCGCTGGGCACGTGGAGGACTACCCGGATGTT
TTGTCGGCGGCGTTGAAGGAGGCTTCCCTTCTCGTGGGAGGTCTGAAACG
GCCTTTGTAGTTGCTTGGAATATGGGTATCATATGACAGTTTATTCTTAC
GCATATATACAGTGAACGTTCAGATCGAGGGAGAGGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig859:28229..31165-

>mRNA_P-littoralis_Contig859.9.1 ID=mRNA_P-littoralis_Contig859.9.1|Name=mRNA_P-littoralis_Contig859.9.1|organism=Pylaiella littoralis U1_48|type=CDS|length=345bp|location=Sequence derived from alignment at P-littoralis_Contig859:28229..31165- (Pylaiella littoralis U1_48)
GTGACAGCCCTGCCCTTCGGCGAAGGCCAGCACTTCGTCCAACTGGCCGG
GGGCACCAACGATCGGACGGCCGAGAAGCTGCGGGAGGTCGGCCTCATCG
GGGGAGACGGCGGACCTGGCCGACTACTCGTGGAGGGCAAGGGGGATCAC
GGTGGTGACGAGCAACAACAACAGAAACGGGTAGGAGGTGTAGCGTACGG
GGGGTATGCGCGGAAGGTCGTGGGCCGCGCGCTGGACCGTCTCCCCAGCG
ACGGCGCTGGGCACGTGGAGGACTACCCGGATGTTTTGTCGGCGGCGTTG
AAGGAGGCTTCCCTTCTCGTGGGAGGTCTGAAACGGCCTTTGTAG
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