mRNA_P-littoralis_Contig858.4.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig858.4.1
Unique NamemRNA_P-littoralis_Contig858.4.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig858.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig858contigP-littoralis_Contig858:4980..7748 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2580
Hectar predicted targeting categoryother localisation
Exons2
Cds size369
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791726.5016463-UTR-P-littoralis_Contig858:4979..67081680791726.5016463-UTR-P-littoralis_Contig858:4979..6708Pylaiella littoralis U1_48UTRP-littoralis_Contig858 4980..6708 -
1680791726.5259807-UTR-P-littoralis_Contig858:7077..74941680791726.5259807-UTR-P-littoralis_Contig858:7077..7494Pylaiella littoralis U1_48UTRP-littoralis_Contig858 7078..7494 -
1680791726.5377703-UTR-P-littoralis_Contig858:7683..77481680791726.5377703-UTR-P-littoralis_Contig858:7683..7748Pylaiella littoralis U1_48UTRP-littoralis_Contig858 7684..7748 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791726.514424-CDS-P-littoralis_Contig858:6708..70771680791726.514424-CDS-P-littoralis_Contig858:6708..7077Pylaiella littoralis U1_48CDSP-littoralis_Contig858 6709..7077 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig858.4.1prot_P-littoralis_Contig858.4.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig858 6709..7077 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig858.4.1

>prot_P-littoralis_Contig858.4.1 ID=prot_P-littoralis_Contig858.4.1|Name=mRNA_P-littoralis_Contig858.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=123bp
MDGERPENVKEGIEPERFECFCARRDCMYEAVKKVLKQCEQQAPIVCTIC
GKGKSKTSMMRLPCSFLHACRVWFSRRDSLNPSAAPLGGTLEAGSPLCQA
CYMKGHTFSTSEDYAAERMRHQ*
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mRNA from alignment at P-littoralis_Contig858:4980..7748-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig858.4.1 ID=mRNA_P-littoralis_Contig858.4.1|Name=mRNA_P-littoralis_Contig858.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2769bp|location=Sequence derived from alignment at P-littoralis_Contig858:4980..7748- (Pylaiella littoralis U1_48)
CGGGAAAGCTCAACGAGGAGGGCGTGAAACACTATCGGACCTGCAGGGCT
GCTTAGAATAGAAAGGTGAGAGTTCTAACTTTTTTTTTAAATCAATCAGC
AGTCCCCCGACTAAAATGCACTGACTGCAGCACGAGAGACCACAGACACA
CCGCAGCCCCCGCAGCATTTTGTAATCAACATGATGCTATGATCATGTGA
CCACATCCATGCGTTCCGTATTCCGTAAACATTGGCTTTGGTTCATGTGT
GCAGGAGCCCGTGGCAACGACTCGTCTCCTTGTGCTCGTGGCGGTGCGGT
GGCGGAGTCCGGCATAAACGGCTGTGACAAATGGAAGTGGAAGTAGCCCC
GGCAGGTGGGGAGGGTGGGGGTGGTGAGAACACGCAGACATCTCGAGACT
CTTTGCCTGAAACGTCGGCGAGATTCAACACGAAGCGGCAAGTCTTTTCG
CCCCACTTAGCCGAGGCGCAGGCGAACCCAAACCCAAAAAAGCAAAAACA
CGTAGGGCTAGCTGTGAAAAGCTGAAATGCGGAATTCGAAGTGGTGGTGG
CCCTGAACCCACGTGCTACGCGTGGGACCGAGAACCCACGACTCAACCAT
CGAGGGGTAGCGTTTGGAGGCACTACCAGAATGACGAGGAAGTAACAGGG
GCGAGAGGTACCTGGGATGGAATGGACGGTGAACGACCCGAAAATGTGAA
AGAAGGGATCGAGCCGGAGCGATTCGAGTGCTTCTGTGCGAGGCGGGATT
GCATGTACGAGGCGGTGAAAAAAGTTCTCAAGCAGTGTGAACAGCAAGCC
CCAATAGTTTGCACTATTTGTGGAAAAGGCAAGAGTAAAACGTCCATGAT
GAGGCTTCCTTGTAGTTTCCTTCATGCATGTCGGGTTTGGTTTTCGCGAA
GAGACTCGCTCAATCCTTCTGCAGCCCCCCTGGGTGGCACGTTAGAAGCC
GGGAGCCCGTTGTGTCAAGCATGCTACATGAAGGGCCACACTTTCAGCAC
CTCCGAGGACTACGCAGCCGAGAGAATGCGGCATCAGTAACAGCAGGAAG
AGTATGCGGCCACACCTCTACCTCTACCCGTGGGATAGGGCGATGCGAGT
TGCATTGACGGCCCTTTGAGAAGAAAGGGGGGGGGGTCAGCAACAACAAC
AGCAGAGGGCCAATTCGAACAGCTGGACTACCAGAACGTAAAGCAGGGCG
GTGGGACGAACGGGATTCGGAGCATTCAGGAGTGGGACGCTAGGAGCTCA
CACTGGACGTTTGTAAGGGCTCCTCTCTACTGTATTTCTGGAGCGCTGCG
TCAAGCCAAACGAAAGATTGACGCCCCGCATCTTCTTGTCGGTGAAAAAC
CGACGTCACCTTTTCCCGGCTGACATCGATGGATGCATCCATGAAGCATA
ACTTTGATGTGCGACGGTCGAGCCTTCGGCATCATCAGCAATCGCCGTGC
ATGACCCAGAGAACCCCCCCCGCCCCCTCGCCGCGGGCACGGGACAGGAG
CAGCACCAGCAGCTCCGGCAGCCGCGACCCCCTCTTTACAACTATCATCA
CGGAGCCGATAGGTCGACTTTTGGGGAACATGCATACCCTGCCCTTTTCT
ATCGTCGCGACATAGTGAGCGATCGTCTTGGACCGATTCGGCCTTTCATA
CTTCGCACTTCGTATTTTTTAGGGCCGATGCGCCGCAGCAGCCCGAGAGC
ACGGAACTTCTCTAATGAACGATCCCATGTTTTTTTCGTTCGTTGTGTGG
CTGTATTTTCAGTGGTGGGCTATACGAACTTGGGGGCCCATCCAATGAAA
CCATGACTTCGGAGCGACTCGGCTTCATATGATGTAACGCTGATGTGTCA
CACGTGCGTGACTTTTATACATACTTTTATACATACCCTTCAAATTTCCA
TGAAGCACAGAAAAGGCTCGAGAATGGGTCACAGCAGTGGCATGGTGCGG
AAGAAACTGCCGAGATCGCTCGAGAGTACTCAAAAATTAAAATAGCATCC
CGTTATCATTACATCACTATTATACTCACGTTCCTGTATGTGAGATTTAC
ACGAAATGCAAGTTAAAACTCGTGAACTCAATACACATTTTTGAGTGGAT
TGTGAAGGGAAATGAAAGCATATGACTTGAAATGGTTTGCCTCCGGCCGC
GCTTCCAGCGGGGCCCCCTCACCAGCCGGGGGGGGGGCGAAGAAGATCGC
CTGTGTTCGCCAAGGTGGACAAGTGGAATGGAGATGGCACAAGAGGAAAT
TATGGGATGTACCCGAAGTACTCTAGCGAAAAGGAGATGAAAAGAGTCAA
AGGTTTTGCGGTTGAGCTGTCGAGAGCTGTTTGACGATCGGTGGGCTTGG
TGTGGGGTGAGGGCATCCGAACGTAAAAAAAATGATGCCATGTCGATGAG
TTCATGAGAGAGGAGGAAGCGGACATCTGGACATCATCTACTTCGTGTGC
TTTTTTTCCCCATTTTTTCCTGTCTCTTGGTTCCGGTTTTCTGTTTTCTG
CCGCTGGTGCGGGTGGATACTTGATGGCGCCGCCATTGTTTAATTATTTC
GTATCCGTTCGGCTGCAACCCGTGGAGTGCCTGCCTGGCAAGCGTTGCAT
GCACGGACCATCACAAAGTCACGGAGAGGTTACACATCCTGTTCTTCATT
TTTTCAAGATTTTTTGCGTTTATATATATTGTGAGATTTACACGGAATGC
AAGTCCAACTAATGAACTCAACACATCATTTTTGAGTGGACTGTGAAGGT
TAACGCACCCATATGACGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig858:4980..7748-

>mRNA_P-littoralis_Contig858.4.1 ID=mRNA_P-littoralis_Contig858.4.1|Name=mRNA_P-littoralis_Contig858.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=369bp|location=Sequence derived from alignment at P-littoralis_Contig858:4980..7748- (Pylaiella littoralis U1_48)
ATGGACGGTGAACGACCCGAAAATGTGAAAGAAGGGATCGAGCCGGAGCG
ATTCGAGTGCTTCTGTGCGAGGCGGGATTGCATGTACGAGGCGGTGAAAA
AAGTTCTCAAGCAGTGTGAACAGCAAGCCCCAATAGTTTGCACTATTTGT
GGAAAAGGCAAGAGTAAAACGTCCATGATGAGGCTTCCTTGTAGTTTCCT
TCATGCATGTCGGGTTTGGTTTTCGCGAAGAGACTCGCTCAATCCTTCTG
CAGCCCCCCTGGGTGGCACGTTAGAAGCCGGGAGCCCGTTGTGTCAAGCA
TGCTACATGAAGGGCCACACTTTCAGCACCTCCGAGGACTACGCAGCCGA
GAGAATGCGGCATCAGTAA
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