mRNA_P-littoralis_Contig857.23.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig857.23.2
Unique NamemRNA_P-littoralis_Contig857.23.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig857.23.2 vs. uniprot
Match: A0A6H5JRH9_9PHAE (Peptide-methionine (S)-S-oxide reductase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JRH9_9PHAE)

HSP 1 Score: 342 bits (877), Expect = 3.100e-115
Identity = 199/301 (66.11%), Postives = 220/301 (73.09%), Query Frame = 1 
Query:    4 LATSSRFGRGXXXXXXXVSAFVRSSPAVLLGRGRPSSGA----FSGQRVAAAATAVPRSSAVAAFSHIADSRRNSKRNTMGMLFSNPFKKKEVDYEELEGAAAEAGRAALKGEVPSKSEGGQDIATFAGGCFWGLELAFQRVPGVTGTSVGYTQGDVEKPTYGEVCSGSTGHTEAVQVFYNPSEVTFAELCDVFYGRINPTQVNGQGGDRGTQYRTGIYPHTKEQ-------MNEVRQHSSFLCWVPDCVVVCRCVCRLAVPSSIPLLSQLYHQQYLAKGGRNGMAQSAEKGATETIRCYG 873
            LA S+R   G       VSAF       +LGR RPSS A    F+G+ + AA    PRSS VAAF+  AD  R S RN+MGM+FSNPFKKKEV+YEELEG AAEA RAALKGEVPSKSE G DIATFAGGCFWGLELAFQRVPGV  TSVGYTQG VEKPTYGEVCSGSTGHTEAVQV+YNPSEV+F ELC VF+GRINPTQVNGQG DRGTQYRTGIYPHTKEQ       M+E+R +              + +      + +   ++LYHQQYLAKGGRNGM QSAEKGATETIRCYG
Sbjct:   14 LAASTRGRNG-------VSAFA------VLGRLRPSSAAGASSFAGKALPAAV--APRSSPVAAFT-CADGSRGS-RNSMGMMFSNPFKKKEVNYEELEGGAAEAARAALKGEVPSKSEAGHDIATFAGGCFWGLELAFQRVPGVVATSVGYTQGAVEKPTYGEVCSGSTGHTEAVQVYYNPSEVSFEELCGVFFGRINPTQVNGQGADRGTQYRTGIYPHTKEQSDVALKVMDELRGNYK------------QPIATEIEGAKVYWPAELYHQQYLAKGGRNGMPQSAEKGATETIRCYG 285
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BLAST of mRNA_P-littoralis_Contig857.23.2 vs. uniprot
Match: A0A6T5PGW5_HETAK (Peptide-methionine (S)-S-oxide reductase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5PGW5_HETAK)

HSP 1 Score: 237 bits (604), Expect = 6.490e-74
Identity = 121/200 (60.50%), Postives = 142/200 (71.00%), Query Frame = 1 
Query:  274 YEELEGAAAEAGRAALKGEVPSKSEGGQDIATFAGGCFWGLELAFQRVPGVTGTSVGYTQGDVEKPTYGEVCSGSTGHTEAVQVFYNPSEVTFAELCDVFYGRINPTQVNGQGGDRGTQYRTGIYPHTKEQMNEVRQHSSFLCWVPDCVVVCRCVCRLAVPSSIPLLSQLYHQQYLAKGGRNGMAQSAEKGATETIRCYG 873
            Y  LEGAA E G AA+ GEVP+ S+ G  IATFAGGCFWGLELAFQRVPGV  TSVGYTQG  E+PTY  VCSG+TGHTEAVQV+YNP EV+F +LC+VF+ R NPT VNGQG D GTQYRTG+Y HT +QM E +   + L          + +     P+ +   ++ YHQQYL KGGR    QSAEKG T+TIRCYG
Sbjct:   88 YGVLEGAAREQGEAAIAGEVPATSKAGHAIATFAGGCFWGLELAFQRVPGVVETSVGYTQGAQERPTYSGVCSGATGHTEAVQVYYNPEEVSFTQLCNVFFERTNPTTVNGQGNDFGTQYRTGVYTHTDQQMIEAQAVFTELKGKYS-----KPIATELKPAQVYWPAEKYHQQYLEKGGRFSSPQSAEKGCTDTIRCYG 282
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BLAST of mRNA_P-littoralis_Contig857.23.2 vs. uniprot
Match: A0A835Z6G6_9STRA (Peptide-methionine (S)-S-oxide reductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6G6_9STRA)

HSP 1 Score: 230 bits (586), Expect = 2.400e-71
Identity = 121/224 (54.02%), Postives = 150/224 (66.96%), Query Frame = 1 
Query:  235 MLFSNPFKKKEVDYEELEGAAAEAGRAALKGEVPSKSEGGQDIATFAGGCFWGLELAFQRVPGVTGTSVGYTQGDVEKPTYGEVCSGSTGHTEAVQVFYNPSEVTFAELCDVFYGRINPTQVNGQGGDRGTQYRTGIYPHTKEQMNEVRQHSSFLCWVPDCVVVCRCVCRLAVPSSIPLLSQL-----------YHQQYLAKGGRNGMAQSAEKGATETIRCYG 873
            MLF   F KK +DY  L+G+AAEA +AAL  +VP+KSE G DIATFAGGCFWG EL FQRVPGV  T VGYTQG V++P+Y +VCSGSTGHTE  QV+Y+P +V++  L + F+ R++PTQVNGQG DRGTQYR+G+Y HT EQ    ++                   RLA  +S P+ ++L           YHQQYL+KGGR    QSAEKG T+ IRCYG
Sbjct:   65 MLFG-AFGKKTMDYTGLQGSAAEAAKAALDKKVPAKSEEGWDIATFAGGCFWGSELQFQRVPGVISTHVGYTQGKVDQPSYDDVCSGSTGHTEGFQVYYDPKQVSYKTLVEEFFSRVDPTQVNGQGNDRGTQYRSGVYFHTPEQEAAAKEVFE----------------RLAKENSRPIATELKAAAVFYPAEPYHQQYLSKGGRFNQPQSAEKGCTDKIRCYG 271
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BLAST of mRNA_P-littoralis_Contig857.23.2 vs. uniprot
Match: K8Z531_NANGC (Peptide-methionine (S)-S-oxide reductase n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8Z531_NANGC)

HSP 1 Score: 210 bits (534), Expect = 1.770e-64
Identity = 108/200 (54.00%), Postives = 132/200 (66.00%), Query Frame = 1 
Query:  274 YEELEGAAAEAGRAALKGEVPSKSEGGQDIATFAGGCFWGLELAFQRVPGVTGTSVGYTQGDVEKPTYGEVCSGSTGHTEAVQVFYNPSEVTFAELCDVFYGRINPTQVNGQGGDRGTQYRTGIYPHTKEQMNEVRQHSSFLCWVPDCVVVCRCVCRLAVPSSIPLLSQLYHQQYLAKGGRNGMAQSAEKGATETIRCYG 873
            Y++L G A EA +AAL   VP+ S  G  IATFAGGCFWG+ELAFQRVPGV  T  GYTQG V +P+Y EVCSG+TGHTEA+QV + P+EV++ +L  VF+ RI+P   NGQGGDRGTQYRTGIY HT  Q     Q         +     R +     P+ +   +++ HQ YL KGGR G AQSA KG T+ IRCYG
Sbjct:    6 YQQLSGLALEASKAALADSVPALSVDGHSIATFAGGCFWGIELAFQRVPGVVATGTGYTQGHVAEPSYQEVCSGTTGHTEAIQVHFKPNEVSYEDLLKVFWERIDPLMENGQGGDRGTQYRTGIYTHTDAQHRAALQSREI-----EQKKYSRPIMTEIKPAKVFWPAEVSHQGYLWKGGRFGSAQSAAKGCTDPIRCYG 200
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BLAST of mRNA_P-littoralis_Contig857.23.2 vs. uniprot
Match: A0A7S2BLV3_9STRA (Peptide-methionine (S)-S-oxide reductase n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BLV3_9STRA)

HSP 1 Score: 209 bits (533), Expect = 2.070e-63
Identity = 120/231 (51.95%), Postives = 141/231 (61.04%), Query Frame = 1 
Query:  208 RNSKRNTMGMLFS--NPFKKKEVDYEELEG----AAAEAGRAALKGEVPSKSEGGQDIATFAGGCFWGLELAFQRVPGVTGTSVGYTQGDVEKPTYGEVCSGSTGHTEAVQVFYNPSEVTFAELCDVFYGRINPTQVNGQGGDRGTQYRTGIYPHTKEQMNEVRQHSSFLCWVPDCVVVCRCVCRLAVPSSIPLL---SQLYHQQYLAKGGRNGMAQSAEKGATETIRCYG 873
            R   +  MG L +   P    E+DY  L G    AA EAG+ AL G VP+KSE G  IATFAGGCFWG+ELA+QRVPGV  T VGYTQG+  KPTY EV +GSTGHTEA+QVFY+P  V F  L  +   RINPT++N  G D GTQYR+GIY HT EQ+ +  +      W  D     R    +        L   ++ YHQQYL KGGR G AQSA KG  E IRCYG
Sbjct:   43 RRGPKLAMGFLENIFGPPPSAEIDYGALTGLPDSAALEAGKHALAGAVPAKSEDGYAIATFAGGCFWGIELAYQRVPGVIATCVGYTQGETSKPTYKEVSTGSTGHTEALQVFYDPKAVDFEALVLLLQSRINPTEINRSGADVGTQYRSGIYCHTDEQLTKAEK------WRMDARASGRYKGEIVTEVKRAGLFWPAEEYHQQYLVKGGRMGRAQSAAKGCEEEIRCYG 267
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BLAST of mRNA_P-littoralis_Contig857.23.2 vs. uniprot
Match: A0A7S2RMP4_9STRA (Peptide-methionine (S)-S-oxide reductase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RMP4_9STRA)

HSP 1 Score: 207 bits (526), Expect = 6.290e-62
Identity = 119/239 (49.79%), Postives = 147/239 (61.51%), Query Frame = 1 
Query:  202 SRRNSKRNTMGMLFSNPFKKKE------VDYEELEGAAA----EAGRAALKGEVPSKSEGGQDIATFAGGCFWGLELAFQRVPGVTGTSVGYTQGDVEKPTYGEVCSGSTGHTEAVQVFYNPSEVTFAELCDVFYGRINPTQVNGQGGDRGTQYRTGIYPHTKEQMNEVRQ-----HSSFLCWVPDCVVVCRCVCRLAVPSSIPLLSQLYHQQYLAKGGRNGMAQSAEKGATETIRCYG 873
            S R  +     M F + FK  E      ++Y+ L G  A    EA   A+  E PSKS+ G  I TFAGGCFWGLELA+QRVPGV  T VGYTQG +E+PTY EVCS  +GHTEA+Q+ Y+PS VT+ ELC++ + RI+PT  +  G D G QYR GIYPHT E+M   +Q      S F     +  +V  C  + AV   +   ++ YHQQYL KGGRNG  QSAEKG T TIRCYG
Sbjct:   72 SARQGRAGATRMFFGDLFKAPELGSGPRINYDTLAGLPASFAREAAEYAMAKEAPSKSKDGHSITTFAGGCFWGLELAYQRVPGVVATCVGYTQGHLEQPTYKEVCSAMSGHTEAIQLTYDPSVVTYRELCELLFTRIDPTAKDRVGNDFGPQYRHGIYPHTDEEMAVAQQFIEDNQSKF-----NRPIVTEC--KKAV---VFWPAEEYHQQYLEKGGRNGSPQSAEKGCTSTIRCYG 300
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BLAST of mRNA_P-littoralis_Contig857.23.2 vs. uniprot
Match: A0A7S1TRL3_9STRA (Peptide-methionine (S)-S-oxide reductase n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TRL3_9STRA)

HSP 1 Score: 201 bits (511), Expect = 2.520e-60
Identity = 112/209 (53.59%), Postives = 136/209 (65.07%), Query Frame = 1 
Query:  265 EVDYEEL-EGAAAEAGRAALKGEV-PSKSE----GGQDIATFAGGCFWGLELAFQRVPGVTGTSVGYTQGDVEKPTYGEVCSGSTGHTEAVQVFYNPSEVTFAELCDVFYGRINPTQVNGQGGDRGTQYRTGIYPHTKEQMNEVRQHSSFLCWVPDCVVVCRCVCRLAVPSSIPLLSQLYHQQYLAKGGRNGMAQSAEKGATETIRCYG 873
            E DY  L +G AAEA   A+ G   P  SE    G   +ATFAGGCFWGLELAFQRVPGV  TSVGYTQG   +PTY  VC+G TGHTEAVQV Y+P EV+F+ LCDVF+ R +PT +N QGGD GTQYR+G+Y H+ EQ  +     +      +       V    +P++    +++YHQQYL KGGR    QSAEKG T+TIRCYG
Sbjct:   46 EADYYPLLQGIAAEAADFAMMGMAQPLVSEKCGKGKLHVATFAGGCFWGLELAFQRVPGVEDTSVGYTQGPQRRPTYRGVCTGGTGHTEAVQVLYDPEEVSFSTLCDVFFSRTDPTTLNRQGGDMGTQYRSGVYYHSDEQKADAEAAFAG----QEAKYGKGSVVTELLPAAEYWPAEVYHQQYLEKGGRFNSPQSAEKGCTDTIRCYG 250
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BLAST of mRNA_P-littoralis_Contig857.23.2 vs. uniprot
Match: E1ZF44_CHLVA (Peptide-methionine (S)-S-oxide reductase n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZF44_CHLVA)

HSP 1 Score: 199 bits (505), Expect = 2.700e-60
Identity = 99/180 (55.00%), Postives = 121/180 (67.22%), Query Frame = 1 
Query:  334 PSKSEGGQDIATFAGGCFWGLELAFQRVPGVTGTSVGYTQGDVEKPTYGEVCSGSTGHTEAVQVFYNPSEVTFAELCDVFYGRINPTQVNGQGGDRGTQYRTGIYPHTKEQMNEVRQHSSFLCWVPDCVVVCRCVCRLAVPSSIPLLSQLYHQQYLAKGGRNGMAQSAEKGATETIRCYG 873
            P+  +  + +ATFAGGCFW +ELAFQRVPGV  T+VGY+QG V+ PTY +VCSG TGHTEAVQ+ Y PSEVT+ +LCD F+ +INP Q NGQG D G+QYRTGIY H +EQ    +   +    +P C V        A  S  P  ++ YHQQYL KGGR G  Q A KG T+ IRCYG
Sbjct:   17 PATRQPDEQLATFAGGCFWSVELAFQRVPGVVATAVGYSQGHVDHPTYEQVCSGRTGHTEAVQLTYRPSEVTYDQLCDAFFKKINPMQKNGQGNDHGSQYRTGIYWHNEEQQKVAQARVAA---IPGCAVEAE-----AFKSFWP--AEEYHQQYLEKGGRGGRGQCAAKGCTDPIRCYG 186
[Close]
BLAST of mRNA_P-littoralis_Contig857.23.2 vs. uniprot
Match: A0A5J4XW10_9CHLO (Peptide-methionine (S)-S-oxide reductase n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XW10_9CHLO)

HSP 1 Score: 200 bits (509), Expect = 1.180e-59
Identity = 104/186 (55.91%), Postives = 125/186 (67.20%), Query Frame = 1 
Query:  331 VPSKSEGGQDIATFAGGCFWGLELAFQRVPGVTGTSVGYTQGDVEKPTYGEVCSGSTGHTEAVQVFYNPSEVTFAELCDVFYGRINPTQVNGQGGDRGTQYRTGIYPHTKEQMNEVRQ-----HSSFLCWVPDCVVVCRCVCRLAVPSSIPLLSQLYHQQYLAKGGRNGMAQSAEKGATETIRCYG 873
             P+K+  GQDIATFAGGCFWG+ELAFQRVPGVT TSVGYT G  + PTY  VCSG TGHTEAVQV+Y+P E  + +L D F+  ++PT +N QGGDRGTQYR+GIY H +EQ +   +     +      V   V+    V  L  P+S    ++ YHQQYL KGGR    QSA KGATE IRCYG
Sbjct:   94 APAKAPSGQDIATFAGGCFWGVELAFQRVPGVTKTSVGYTAGHDKAPTYNSVCSGQTGHTEAVQVYYDPKETDYTKLLDCFFQHVDPTTLNQQGGDRGTQYRSGIYYHNEEQKHAAEKAIAEVNKKLKSNVFRRVMGSEVVSELE-PASDYYTAEEYHQQYLEKGGRFSSPQSAAKGATERIRCYG 278
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BLAST of mRNA_P-littoralis_Contig857.23.2 vs. uniprot
Match: A0A7S2JVE8_9STRA (Peptide-methionine (S)-S-oxide reductase n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JVE8_9STRA)

HSP 1 Score: 199 bits (507), Expect = 1.290e-59
Identity = 106/204 (51.96%), Postives = 132/204 (64.71%), Query Frame = 1 
Query:  268 VDYEELEGAAAEAGRAALKGEVPSKSEGGQDIA--TFAGGCFWGLELAFQRVPGVTGTSVGYTQGDVEKPTYGEVCSGSTGHTEAVQVFYNPSEVTFAELCDVFYGRINPTQVNGQGGDRGTQYRTGIYPHTKEQMNEVRQHSSFLCWVPDCVVVCRCVCRLAVPSSIPLLSQLYHQQYLAKGGRNGMAQSAEKGATETIRCYG 873
            + Y+ L   A E G+ A +G V   SE   ++A  TFAGGCFWGLELA+QRV GV  T+VGYTQG   KPTY EVCSG+TGHTEA+ V+YNP E ++  L D F+ R++PT VNGQG DRG QYRTG+Y HT EQM   +       +  +     R +      + +   ++ YHQQYL KGGR G  QS EKG+TETIRCYG
Sbjct:   60 IPYDTLGYPADEMGKLAEEGTVVVNSEKKPNLAAATFAGGCFWGLELAYQRVAGVEYTAVGYTQGPELKPTYNEVCSGATGHTEAICVYYNPEECSYESLLDTFFQRVDPTTVNGQGNDRGPQYRTGVYTHTPEQMEIAKAR-----FEEEKSQYKRPIASELKEAQVFWPAEKYHQQYLEKGGRFGTPQSTEKGSTETIRCYG 258
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig857.23.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JRH9_9PHAE3.100e-11566.11Peptide-methionine (S)-S-oxide reductase n=2 Tax=E... [more]
A0A6T5PGW5_HETAK6.490e-7460.50Peptide-methionine (S)-S-oxide reductase n=1 Tax=H... [more]
A0A835Z6G6_9STRA2.400e-7154.02Peptide-methionine (S)-S-oxide reductase n=1 Tax=T... [more]
K8Z531_NANGC1.770e-6454.00Peptide-methionine (S)-S-oxide reductase n=3 Tax=M... [more]
A0A7S2BLV3_9STRA2.070e-6351.95Peptide-methionine (S)-S-oxide reductase n=1 Tax=F... [more]
A0A7S2RMP4_9STRA6.290e-6249.79Peptide-methionine (S)-S-oxide reductase n=1 Tax=R... [more]
A0A7S1TRL3_9STRA2.520e-6053.59Peptide-methionine (S)-S-oxide reductase n=1 Tax=P... [more]
E1ZF44_CHLVA2.700e-6055.00Peptide-methionine (S)-S-oxide reductase n=1 Tax=C... [more]
A0A5J4XW10_9CHLO1.180e-5955.91Peptide-methionine (S)-S-oxide reductase n=1 Tax=T... [more]
A0A7S2JVE8_9STRA1.290e-5951.96Peptide-methionine (S)-S-oxide reductase n=1 Tax=L... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig857contigP-littoralis_Contig857:98999..104975 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FRP8
Preferred nameMSRA4
PFAMsPMSR
Model size878
Max annot lvl2759|Eukaryota
KEGG koko:K02214,ko:K07304,ko:K14442,ko:K16914
KEGG Pathwayko03018,ko04110,ko04111,ko04113,map03018,map04110,map04111,map04113
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005829,GO:0006464,GO:0006807,GO:0006950,GO:0006970,GO:0006979,GO:0008113,GO:0008150,GO:0008152,GO:0009314,GO:0009416,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009628,GO:0009651,GO:0009719,GO:0009725,GO:0009735,GO:0009941,GO:0009987,GO:0010033,GO:0016491,GO:0016667,GO:0016671,GO:0019538,GO:0031967,GO:0031975,GO:0033554,GO:0033744,GO:0034599,GO:0036211,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0050896,GO:0051716,GO:0055114,GO:0070887,GO:0071704,GO:0080167,GO:1901564
Exons6
Evalue9.1e-112
EggNOG OGsCOG0225@1|root,KOG1635@2759|Eukaryota
Ec32 ortholog descriptionmethionine sulfoxide reductase
Ec32 orthologEc-00_003370.1
EC1.14.11.27,1.8.4.11,2.7.11.1,3.6.4.13
Descriptionpeptide-methionine (S)-S-oxide reductase activity
Cds size876
COG categoryO
BRITEko00000,ko00001,ko01000,ko01001,ko03009,ko03019,ko03032,ko03036
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig857.23.2prot_P-littoralis_Contig857.23.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig857 98999..104975 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791726.27554-CDS-P-littoralis_Contig857:98998..991931680791726.27554-CDS-P-littoralis_Contig857:98998..99193Pylaiella littoralis U1_48CDSP-littoralis_Contig857 98999..99193 -
1680791726.290369-CDS-P-littoralis_Contig857:99887..1000461680791726.290369-CDS-P-littoralis_Contig857:99887..100046Pylaiella littoralis U1_48CDSP-littoralis_Contig857 99888..100046 -
1680791726.3026307-CDS-P-littoralis_Contig857:100995..1011281680791726.3026307-CDS-P-littoralis_Contig857:100995..101128Pylaiella littoralis U1_48CDSP-littoralis_Contig857 100996..101128 -
1680791726.3144078-CDS-P-littoralis_Contig857:101674..1017331680791726.3144078-CDS-P-littoralis_Contig857:101674..101733Pylaiella littoralis U1_48CDSP-littoralis_Contig857 101675..101733 -
1680791726.3279483-CDS-P-littoralis_Contig857:102589..1027321680791726.3279483-CDS-P-littoralis_Contig857:102589..102732Pylaiella littoralis U1_48CDSP-littoralis_Contig857 102590..102732 -
1680791726.3386543-CDS-P-littoralis_Contig857:104788..1049751680791726.3386543-CDS-P-littoralis_Contig857:104788..104975Pylaiella littoralis U1_48CDSP-littoralis_Contig857 104789..104975 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig857.23.2

>prot_P-littoralis_Contig857.23.2 ID=prot_P-littoralis_Contig857.23.2|Name=mRNA_P-littoralis_Contig857.23.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=292bp
VLATSSRFGRGGGGGGGGVSAFVRSSPAVLLGRGRPSSGAFSGQRVAAAA
TAVPRSSAVAAFSHIADSRRNSKRNTMGMLFSNPFKKKEVDYEELEGAAA
EAGRAALKGEVPSKSEGGQDIATFAGGCFWGLELAFQRVPGVTGTSVGYT
QGDVEKPTYGEVCSGSTGHTEAVQVFYNPSEVTFAELCDVFYGRINPTQV
NGQGGDRGTQYRTGIYPHTKEQMNEVRQHSSFLCWVPDCVVVCRCVCRLA
VPSSIPLLSQLYHQQYLAKGGRNGMAQSAEKGATETIRCYG*
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mRNA from alignment at P-littoralis_Contig857:98999..104975-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig857.23.2 ID=mRNA_P-littoralis_Contig857.23.2|Name=mRNA_P-littoralis_Contig857.23.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=5977bp|location=Sequence derived from alignment at P-littoralis_Contig857:98999..104975- (Pylaiella littoralis U1_48)
GTGCTGGCGACGAGCTCGCGTTTCGGGAGAGGAGGAGGAGGAGGAGGAGG
AGGAGTCAGCGCTTTCGTTCGCAGCAGCCCTGCCGTCTTGTTGGGGCGCG
GTCGACCATCGAGTGGTGCTTTCTCTGGCCAGCGCGTAGCAGCAGCAGCA
ACAGCTGTTCCGAGGTCTTCGGCTGTGGCCGCATTCTGTGAGTTTTTTTC
AACCCAGTATGGTATGTATATCGAGACTGAGTACAGTGCGTAGTACTTAC
GGAGTACGGAGTGGTACCGGGGTGATAATCATACAATTCGGATGTGTGTG
TTGTCATCCCATCTATTCTGGGCACCAGTCTATTCATTTCGGTATGAAGT
GGGTGCATCAGCCGGGGTCACACAGAAGGAAGGCCACACACGACCTTTTG
CTCTTTATTTTGTTCTATAGCCGTCACCTTCCTCCTGCGGTACGTGCTTT
GGTGTTTCATGCGAGTCGTGTACAGCAATCCCTTCCCTCTGTTTACTCAC
GAGTAATTCGCTTTCCACTGTAAAGTCGCAAGACACGCTCTCAGAGAGAA
TCGAACCTAAAACCTTACAACTAGTAGGTTAACGAGGGGACCACTAAACT
ACCGGGGCGACCGTACGATTCGGGTTCAAGTATTATATATACTTCGAAAG
TGGGAGGTATACATGCATGGGGTTTTACCTTTGCGGCAGAGTGCTACGGA
GTTGCTGCTTTTACATGAGATAGTTCGCGCACATGACTTGATTGCACACA
ACGTAGATACAAATGCGCCATGCGGCGTTCCGTTGTTGCGTCGCTCTTTC
TCGCTCTCTTTCTCTCTCTTCTCTCTTATCGAATTGAAAAAGGGGAGGGG
GGCAGGGCAATAGAGCGGTGTTGGCAGCGGTAGTTCCAAGGCGCCAGCCG
TTCATTTGTGTGTCGCAAACATCATACGGCATCCAATCCTTTCGCGCACA
GGCAGCAAGCACCGCCGTCTCAAGATCGAATTAGGTGGTCGGCAGACGAG
GGAGAGAGATAGAGAGAAAGAGCTGTTCGCTCGCCCCCGCGGCTTCTTGT
TCTACAAGTCCGCCTACATACCATGTCCATCGAACTCGCACTCGCACTCC
CAGCGATGACAGCAGTAATCGTTGTATTCGCCGACGGATCGGAACCGGCT
GAGAGGGGAGATCGAGCTCGTTCCACGCGCACGATAGACTGCGGTGTGTG
GTGTGGCATCTGGTTGGCCTCACGACCGAAGAACCTCTCGGCCGGCGAAG
ACGGTCATGACGTCGAGGACCCTCGGGTTCCAGGACGGCCTATTGTCCCG
TTAACGAGCTCTTTCACCACCGCCGCCCTGACACGATCCGATGTCAACGG
CAAAGAGCATCTCTATTCGAAAGATGGCACTTTCGTCAAAGACCCTGGCC
TGGTCCCAAGACCGCCACCCCCCCCCCCCCCCCATGCCCTGGCGTGGTGG
ACGATATGATCACACGTCAGAGCGGGGGTTGGTACCTATAGAGGTAGAGG
TTTTGGTCGTGAGGCCACCCACCAAACAAGAAAACGACGTTCTTTTTGTG
CGCGTGAGGAACAAAATCGGGCTGTCCCTCCCTCCCTCCTGCCCTCGGGA
TGTGGTCCGTCGTCGACGAACAAAACTGCCGTAATCGGTATGAGTGCGAG
TCCATCGGGCATGGCATGGTAGTCAGCCTTGGATAAGACGGCGTCGCCAA
GAGGCGTGCGACACTTTTCCCTCTTTCTGTACTGTAGTTTCCCCGCGAGG
GCGTTTTGACCAGTCAGGAAACTGCGTGTCACCTTTCCCTCTTTCTCTCT
GAAGAATATGCACCCTCGTCTGTCCGCGCGACTCTTGTTTTTGATTCCAC
GGCGGCGGTGCCGCCTTGCGTGAGGATTGGACATGCCTTGCAGCAGGACG
ATATTATCATCAGCGCCCAGTAGTTTTCGTGAGCGGCCAGTGATCCAGCA
GGTCTTGTGACATGTCCGCTTCGATGAGCTGCGTTGAGTCGCCAACCACG
CTCACTACTCTGGGTTCAGTCGGCGAACTGGATGCACTGGTAACCTGCCT
CTATGCTACTCCTGTGAGGAATTCACCACGGCTACTACCATCGCGCGAGG
GATTCCCCAAAACCCCGGTAATGGAGTCTCACCTAGTCTCGCTCGAATGC
CGGAGAGATGGCCCACGATGTAATTCTTCGCAATCCCTCTCTCTATTTTT
CTCTCTCTCACCCTCTCTGCTGTGTGACGACAACATATGTCAGCCCACAT
CGCAGACAGCAGACGCAACAGCAAGAGGAACACCATGGGCATGCTGTTCT
CCAACCCTTTCAAGAAGAAGGAGGTCGACTACGAGGAGCTCGAGGGGGCG
GCGGCGGAGGCGGGAAGGGCTGCCCTTAAGGGGGAGGTGAGATAGCACAA
GGACAGACACAGAAGAGAGGCAAGCAGGCAGGCAGGCAGACAGACAGGCC
GATAGCAGACACGGGATCATTTCAATGAACATCTCTGAGACTACCGGCGG
GTATATTGATCGGCTGGATCGATTGTCTGATATTAACAGCCCGGACTTCT
CGCGATCTGGGTTGGATGTCCGCTCTGAACAGCCTGGATCCGTTGCCCTC
ATCGCAATCATCAAAAGTATCCGTAATAAGCTCGATATGCACTGAGCTGT
ACACATCGCGATAGAGAACTGCACACGCAGCTGTGTTGCACAGGCAATGA
CTCATGTGGCGGTTGTGGAAACTAACTGCCCGGTGTTGGCTTTTTCCGAC
AGTCCCGCTGTGTGTACTGTCCCCGTCGATATGCCACACCGTCTTCGTTT
TCACCTATCAAAAGAAACAGAGGCGTTTTGGGTTCGGAGAAACAAAAGAG
GATTGTGTCCTACGGCAGACTTGGTCTTGCGTGCTACTGGAACGTGGTAA
AAGTGAAAAAAAATAACCTTGGTTTAAGTGTTTCTCGGGGAACCCCCCGA
TCCTGTCAGTGTTTCTCGGGGAACCGCGCGATCCAATGTCGTACAGCACA
GGATCAAAGTCGAAAAACCAAAGGTGCGTAAGTTGAAACCTACCAGGTAC
CTGGTAACATTGCTGTAAAGTGTGTATTGCAATCATTCCACAGTAATGAC
GCCCGACAGCTGCTGGATAGTTAGCCCGCGGGAATGGGATTCCCCCTCTG
AGCGACATGGCGGAGTCAATGGTTCAACATTGGATTCGAGCAACCCACGC
ACACACACCGCCGCCGTCAACAATCGCCCTCTAATATGATAGGTGCCTTC
TAAAAGCGAAGGTGGACAGGATATCGCAACTTTCGCCGGCGGGTGCTTCT
GGTGAGCGCGAAAACAAATTACGCTTGAGTTTTTTTCACAACATGTCTGG
TACCATGTGCGTGTGTTTTATTTATTATTTTGTTGTCTGAGGCTTTCTGT
TCAAAACCATGATGTTTTTTTTTAAGGTGAGGTTATACATGCGTGCAGAC
AGCCAAGGGAGGCTGTGAGTCTGTCCTGCCCAAAATGTTGAAGAGCCGCA
CACCGGTGTGAGTGAGGCTTGGCTGGATCCCGCTCCGGCACGTTTGCGAT
ACGTACGTACGCCCGGAAAAATGTCGTCGATTGGTTTTTCATGGCAAAGA
AAAAAAAAACATGTTTTTGTATGGAAGTTAGCGGTTTTTTTTTGTGTCTT
CCGGGGTGCGCGTTTCCCCCGGTTGTTTTGCCGTCAAGAAACTTCCGAAG
TGACTTGCACACGATGCCCCTCCCTTCCCCGCCTCAACCAAGCACCAGCA
CATTGTTTTTTGGCAATTTTTATAAATCTGACGAAAGTTATCATACGCAC
AAAACACACACTTTGCTGTCCCAATTTTTTTTTCAAATGACGTCAAGGGG
TTTGGAATTAGCGTTCCAGCGCGTGCCTGGAGTGACGGGTACTAGCGTCG
GGTACACGCAGGGCGACGTAGAGAAGCCAACGTACGGAGAGGTGTGCAGC
GGCTCTACGGGACACACGGAGGCGGTTCAGGTGCGGATCCGAAACGAGCG
GTGGTGGTCGTGGGGGGGGGGGGGCAGGTGGGGCAGGAATCTTTTGTTTC
TCTCGCCTTTGAACTTGTCTTGGTTGGTATGGTATGGTGTGATGCAGTGC
AGAAGACGACGGGGTACCCGAGTAGTGAGGGTTATTCAATCGCGTACTGT
CTGTGTGTGATGGAAGGCGAGGGGTGCAGGTGGAGGAGGTGGTCTTAATC
TCGCGCGGCCGCCGCTTGCGTTAAGCGGCCCCCACACCCCCTTCCGTCCC
CAGAAAGGGGGGTCGGGTGTAAAGAGGCCGCACACCCATCTGCACAAAGG
CGGGCAACCGTCAAGGAGAAGGGCGGGGGTAGTGGAAGAGGTGGCGCGCC
ACCGTCAGGGGGGGGCGCGGGGGCAGGGAATCGGGCGGCACATATCCGCA
TACCCACGGGTGGGCAACCGTCGAAACTCGCACGTATCATACGTACAAGC
ATGTACTTCTCAAAGCATATGATGGGTGTATCACTACGTGCAGATCGTAC
TCCTGCTGTTCCGTTTTTTTTTTCGCAATGACACGTGAGATGGGGTTGAC
AAGTGACGCACACAACGCAGCAGCACTCAGTGCAAGTGTGAAGTCGTGAT
GATATGAGGAACCGTTTCTCCGGCTCTTCACGCTCGAACCGCTCTTTGGA
GCGATGAAACGCCAACAAATGATCGTAGTAGGTGTGGATGATCTACTCGT
ACCGACAGTTTTGTTTTTGCTCCACCGACAGCTCCGAAGCCGGAGGCTAC
CCGCTCTTGTTGAATTGCAGCGTCACAACACGCACAACACACACACACAC
ACACACGACGCTAAAATTGACGCAGTTTCATCGGTCAGCCGGGTCAGCGC
GGCCTTTTTGCTCGTAAAATGACATACTCGCACACGCGCGCACGCACAAC
ATTGCACACACGTTGTTGTGAAAACGCAGGTTTTTTACAACCCTTCTGAG
GTGACTTTCGCGGAGCTGTGTGACGTGTTCTACGGCCGTATCAACCCCAC
CCAGGTCAACGGGCAGGGGGGAGACCGGGGTACCCAGTACCGAACAGGGA
TCTACCCCCACACCAAGGAGCAGATGAATGAGGTGCGTGTGCCTTTGTTG
TCTCTTTCTTGACTCTTTGTTATTTCTTCCGCTCTCTGTTTGCCTGTCTG
TCTCGTCCAGACGGTAAGTGCCTCGCCTAAAAACCAAGTGGCTTGTAGAC
CGGCACAACCAGCCGATTCAAGCAATTTCCCACCGCGCCCGTGTGTGTTT
TAACCCGCACATTCATGTGCTGGTTCGGTCCATGCATTCATTTCACACAG
CTGCTCCCACTGCTCTTCGTATTGGTTCTGTTGTTGTGTTGTTGTTGTCG
TTGTTGTTCTTCACCCCACCTCTCCTGTTTCTGCTGCTGGTTTGCTCTTC
AATTTTTCTTTGGTCCTACGAACATGTATCGTAGGCGATGAAGGTGACGG
ACGGGCTCAGGGGCAACTACAAACAACCGATTGCCACAGAGTGCAAGGAC
GCTCAGGTCTATTGGCCGGCAGAGGTACGTTGATGAAAAGCCAAGGAGAC
CAGCAAGCAAAACCAAAAACGCTTTAAATCTAAAATGAGAAAATGCTGCT
CTCCCGTGTACATCTTCGACGTTTTCTGTTTTTGTGTACGTAGTACTTCG
CATGTGGTGTCGTAATTCTAATGATGCTGGCAGCGTTTAATGCAGCGAGG
TGGGTAGATTTAATGTGATGCGGTAAAATCTTGCTTCGTCTTTTTTTTCT
AGATATGTGTCCAGCACGTTCACGAAGAAAAGCAACACTCGTCCTTCCTT
TGCTGGGTGCCTGACTGTGTGGTGGTGTGTCGGTGTGTCTGCCGTCTGGC
CGTTCCTTCCTCTATCCCTCTCTTGTCCCAGTTGTACCACCAGCAGTACC
TCGCCAAGGGCGGACGCAACGGCATGGCGCAGAGCGCCGAAAAGGGAGCC
ACGGAAACCATCCGTTGCTACGGCTAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig857:98999..104975-

>mRNA_P-littoralis_Contig857.23.2 ID=mRNA_P-littoralis_Contig857.23.2|Name=mRNA_P-littoralis_Contig857.23.2|organism=Pylaiella littoralis U1_48|type=CDS|length=876bp|location=Sequence derived from alignment at P-littoralis_Contig857:98999..104975- (Pylaiella littoralis U1_48)
GTGCTGGCGACGAGCTCGCGTTTCGGGAGAGGAGGAGGAGGAGGAGGAGG
AGGAGTCAGCGCTTTCGTTCGCAGCAGCCCTGCCGTCTTGTTGGGGCGCG
GTCGACCATCGAGTGGTGCTTTCTCTGGCCAGCGCGTAGCAGCAGCAGCA
ACAGCTGTTCCGAGGTCTTCGGCTGTGGCCGCATTCTCCCACATCGCAGA
CAGCAGACGCAACAGCAAGAGGAACACCATGGGCATGCTGTTCTCCAACC
CTTTCAAGAAGAAGGAGGTCGACTACGAGGAGCTCGAGGGGGCGGCGGCG
GAGGCGGGAAGGGCTGCCCTTAAGGGGGAGGTGCCTTCTAAAAGCGAAGG
TGGACAGGATATCGCAACTTTCGCCGGCGGGTGCTTCTGGGGTTTGGAAT
TAGCGTTCCAGCGCGTGCCTGGAGTGACGGGTACTAGCGTCGGGTACACG
CAGGGCGACGTAGAGAAGCCAACGTACGGAGAGGTGTGCAGCGGCTCTAC
GGGACACACGGAGGCGGTTCAGGTTTTTTACAACCCTTCTGAGGTGACTT
TCGCGGAGCTGTGTGACGTGTTCTACGGCCGTATCAACCCCACCCAGGTC
AACGGGCAGGGGGGAGACCGGGGTACCCAGTACCGAACAGGGATCTACCC
CCACACCAAGGAGCAGATGAATGAGGTGCGTCAACACTCGTCCTTCCTTT
GCTGGGTGCCTGACTGTGTGGTGGTGTGTCGGTGTGTCTGCCGTCTGGCC
GTTCCTTCCTCTATCCCTCTCTTGTCCCAGTTGTACCACCAGCAGTACCT
CGCCAAGGGCGGACGCAACGGCATGGCGCAGAGCGCCGAAAAGGGAGCCA
CGGAAACCATCCGTTGCTACGGCTAA
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