mRNA_P-littoralis_Contig856.6.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig856.6.1
Unique NamemRNA_P-littoralis_Contig856.6.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig856.6.1 vs. uniprot
Match: D7G541_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G541_ECTSI)

HSP 1 Score: 374 bits (960), Expect = 5.040e-124
Identity = 202/391 (51.66%), Postives = 253/391 (64.71%), Query Frame = 1 
Query:    1 LSAEAERQASQLWGDGIMVELALASDVAEMRHAQPRTVFDNALTEEGFLGFTKDLDLLALPFATHTGFISLFRQYASDVPKGAARQSRAKGLFNYLCKSSDVQRLGNEDIARLLDALGLPSISEKDSIAYTYADGTWDFYAFSRHLHHQNWVHEVDEGDQSVRKSGQKSSSEREDSIIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAHGSTASETFVAMKRDGFEKAMEELACAVRPACESCECEGCRKLRGLEVTLQSFEGSNMANNVERISISVEANVQHISWATIQLYSEVLAPNAERLSAVKASGSQDVFGAAWFSSTSRKALCRNEQMLREIFLALVGRQGDRDALTYPTSTRGGAQNQPDDDGTFLTLKRIRADCMWVISLLS 1173
            + AE ERQA+QLW +G     A+  D  E   + PR VF+NALTEEGFLGF +DLD+LALPFATHTG ISLFR+YAS + KGAA Q+RAKGLF++LCKSS V RLG EDIA+LLD LGLP IS++D++ YTYADG WD+ AF RHLH   W+ EV +GD+SV  SG + S   + +                                   +  ++ FV MK+DGFEKA++ELAC VR   E+CECEGC   R  E  L+  EG+ M   +ER+ I + A   H SWAT++LY E+LAPNA +L A KA+ SQD+FG+ W S TSR  L  N+QML+EIFL LVGRQGDRD+L       GG++NQ +D      LK +RADC WV SL S
Sbjct:   35 VKAEVERQATQLWEEGFTYAPAMNGDDTETPPSAPRVVFENALTEEGFLGFARDLDILALPFATHTGLISLFRRYASKLTKGAALQARAKGLFSWLCKSSGVHRLGKEDIAKLLDGLGLPRISDEDALPYTYADGMWDYNAFCRHLHDNQWITEVADGDESVT-SGNRLSGSADGASADSRQRDSDESSTSSDPSELASAVSDSSVSTDDSTPWADRFVGMKKDGFEKAIQELACTVRLPGEACECEGCSTRRVREAKLEHQEGTTMDKEMERLRIKMHAKELHTSWATVRLYFEILAPNAAKLFAAKANASQDIFGSPWSSPTSRNLLFDNDQMLQEIFLTLVGRQGDRDSLN---DREGGSRNQLEDT---TVLKGLRADCRWVFSLSS 418
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig856.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G541_ECTSI5.040e-12451.66Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig856contigP-littoralis_Contig856:66467..71745 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1173
Hectar predicted targeting categoryother localisation
Exons9
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-00_008410.1
Cds size1173
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig856.6.1prot_P-littoralis_Contig856.6.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig856 66467..71745 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791725.0810454-CDS-P-littoralis_Contig856:66466..665511680791725.0810454-CDS-P-littoralis_Contig856:66466..66551Pylaiella littoralis U1_48CDSP-littoralis_Contig856 66467..66551 +
1680791725.0922515-CDS-P-littoralis_Contig856:67313..674731680791725.0922515-CDS-P-littoralis_Contig856:67313..67473Pylaiella littoralis U1_48CDSP-littoralis_Contig856 67314..67473 +
1680791725.10407-CDS-P-littoralis_Contig856:67842..679801680791725.10407-CDS-P-littoralis_Contig856:67842..67980Pylaiella littoralis U1_48CDSP-littoralis_Contig856 67843..67980 +
1680791725.120865-CDS-P-littoralis_Contig856:68904..690121680791725.120865-CDS-P-littoralis_Contig856:68904..69012Pylaiella littoralis U1_48CDSP-littoralis_Contig856 68905..69012 +
1680791725.135714-CDS-P-littoralis_Contig856:69582..697841680791725.135714-CDS-P-littoralis_Contig856:69582..69784Pylaiella littoralis U1_48CDSP-littoralis_Contig856 69583..69784 +
1680791725.147603-CDS-P-littoralis_Contig856:70163..702861680791725.147603-CDS-P-littoralis_Contig856:70163..70286Pylaiella littoralis U1_48CDSP-littoralis_Contig856 70164..70286 +
1680791725.1598983-CDS-P-littoralis_Contig856:70631..707391680791725.1598983-CDS-P-littoralis_Contig856:70631..70739Pylaiella littoralis U1_48CDSP-littoralis_Contig856 70632..70739 +
1680791725.174575-CDS-P-littoralis_Contig856:71087..711651680791725.174575-CDS-P-littoralis_Contig856:71087..71165Pylaiella littoralis U1_48CDSP-littoralis_Contig856 71088..71165 +
1680791725.1847198-CDS-P-littoralis_Contig856:71574..717451680791725.1847198-CDS-P-littoralis_Contig856:71574..71745Pylaiella littoralis U1_48CDSP-littoralis_Contig856 71575..71745 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig856.6.1

>prot_P-littoralis_Contig856.6.1 ID=prot_P-littoralis_Contig856.6.1|Name=mRNA_P-littoralis_Contig856.6.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=391bp
LSAEAERQASQLWGDGIMVELALASDVAEMRHAQPRTVFDNALTEEGFLG
FTKDLDLLALPFATHTGFISLFRQYASDVPKGAARQSRAKGLFNYLCKSS
DVQRLGNEDIARLLDALGLPSISEKDSIAYTYADGTWDFYAFSRHLHHQN
WVHEVDEGDQSVRKSGQKSSSEREDSIISSSDTSSSSSDSSDQGSSTSVV
SSAGSSASAHGSTASETFVAMKRDGFEKAMEELACAVRPACESCECEGCR
KLRGLEVTLQSFEGSNMANNVERISISVEANVQHISWATIQLYSEVLAPN
AERLSAVKASGSQDVFGAAWFSSTSRKALCRNEQMLREIFLALVGRQGDR
DALTYPTSTRGGAQNQPDDDGTFLTLKRIRADCMWVISLLS
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mRNA from alignment at P-littoralis_Contig856:66467..71745+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig856.6.1 ID=mRNA_P-littoralis_Contig856.6.1|Name=mRNA_P-littoralis_Contig856.6.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=5279bp|location=Sequence derived from alignment at P-littoralis_Contig856:66467..71745+ (Pylaiella littoralis U1_48)
CTCAGTGCGGAGGCTGAAAGGCAAGCGTCACAGCTGTGGGGAGACGGGAT
CATGGTTGAACTAGCATTGGCTAGCGATGTCGCAGGTACGCGGGCCAACT
TTGGATGTAGACTGTGTACGTGTTACAATATTCTAGCTTGTGTCGGTAGT
CCTCAGTAAAGCGACAAGCTCAAGGCACATGTCAGACCAATACACGATTC
GGCCCGATAGGAGTATTCCACTCCTTGATATTCAGTGTGGTAATGCTCAT
CCTCGTGGTATGTGTAGCCCGAGGCAATGCCAAGGTGACTTTACATTAAA
ACTGTGCTCTAACCCTACAGCACGGCTCTTTCAAGATGGAAAGCAGTTAC
TATAGGGTGGGACTCTCTTGGCGCACGACTCGCCACTAGACACAATATTT
TGACCTCACATCGTATTTGGAGCAGGCTACTAGCCCGGGGCTTGCCCAGC
ATGAATTTTCGGCCGAAAGTTTTCGGCGCCTACCCTGAAATAGCGCCTGT
GAGGAATCTATCATTATGAGTGACATACTGCATCCGTGCTTCGTACTGCA
TGCCGATCCCACAGAATCGAAATCACACGTAGGTAAGCATGTAAATATTC
AGACAGCAGATCCCGAGGGTGCCTGTGCACTCACCGCGTGAATCTAGATC
GTAGAAGAAGTGCACACGGCAGCAGGCCGCAGCCAGCACCGATTTCAACA
ACATACATCGTAGGCCTTTGAGTGCAAGCAAACGCCCTTCATTCAGAAAG
TACAGCCCGTAGTTGATCGTAAGCGTGCTGCTCTTGATACAATTCATTCC
GTTCTTTGCTCCGCATCCGCTTCCTTGATGTGTACAATTTTTTGCAGAAA
TGCGTCATGCCCAACCGCGTACTGTGTTCGATAACGCTCTTACGGAAGAA
GGCTTCCTCGGATTCACCAAAGATTTGGATCTACTAGCATTGCCGTTTGC
CACACACACTGGCTTCATCTCTCTTTTCCGACAGTATGCCTCTGATGTGC
CGAAAGGGTGAGTGGGCTTTCGGAGCGGTTGTGTGCCATATCGTCGCGGA
AAAATGCTTCTAGGCACACGGGTCAGAAGTGGACCATCACGTTGTGCTCG
AAAGCATTAGACATATAATATGGACTGATCAGCGTCGTATTGCGGTATTC
TTGTCCTCCACGTTGACATATTTTCTCCTAAAGTGCTGGCTTGTCCGAGC
TTCCGCGGTCGGCTCCTATACTCTAGTCTTACCCTGCATAACGGCAAGAC
GAGTTGTTGAGGAGGATGTAGAATCTTTTAACAAGATGTGCATCAAAAGA
AGTGGTAGCTTTCACCGTTGTGCGGTTGGCAAGTGTTGTCTGGTAGCCGT
CACCATTTTTTGTTTGTTTGTCGCAGCGCTGCCCGTCAATCGAGGGCAAA
GGGCCTATTCAACTACTTGTGCAAGTCGTCTGACGTTCAACGGCTGGGAA
ATGAGGACATTGCGAGACTACTGGATGCCTTGGGGCTGCCAAGCATCTCT
GAGAAGGACTCAATGTGAGGGCTATTTGCATCATCTGCAAAGCGAGAGGA
GGAGAGGTTGGTACTCAGTTGTTGCTTGACTGGGCCATGTGACCATTGAC
CATACATCCAGGACTGAGTACCATTCCTACTCCAAATGAGTCACCACCAG
CGTTTAGGCGCTCTTCACGTTGTTTTATGCACGTTCCGTAAATCGACGTG
CTTCTCTCATCTCCTCTCCGTGTAGGCTGTTGTGAACACCTTTGTCACTA
CAGTTTTCGCGCTATCATCCAATGCCTTACTTTCCATGTCACACCCATGT
ATTTCCTCACCTCCCCCATAAGGCCTCCTCTTTCCGTCGTGTAAGTTTCG
CGCTCTGCAACTACATATCCTACCGCCTCCTTCCTCCTCCTTCCTACTAC
AGTACAGCACTGAAATAGCTTTTCTTCCTTCTTTGCAAGTCCCAGTCTGC
CGCTTGAAAATGCCAATTCAGCTTGTTGGCAAAGCATGTCGAGCCGTTGA
GACACATTTTACGTATTCGTCAACTATCCTAAACGGTAAGTGGGAGGGGG
CAGAAGTACAAACTAGAGGACACGGGTTGCGTTGTATAGTGGCAGGCAGA
TGGGAGTTAGGTACGAGAAGGAGCTTGCAGCTAGTAGGCGGAGCTATGGC
ATTATCCTGGGAGGGGGTGCAACAGAGCACGTCCTTTCGTTCACGACCAG
AGCCGATTCGAGTTCTAAGATTTGTGCCTCACGATACACATGTCCAGTCA
CTTTCCGGAAACTATCCGAGATTGACTGTTCATCCGTAGATATGCAACAG
GGTGGCACAAACCTCGACGTGAGAAGTGTGGAGACTTAAATACAAACAAC
GAGGTCGAGTAAATCGAAATCATCGTCTCTCCTCTGTCCTTCCCCCGCTG
CTCACGCCTACCTCTGTGTTGCATTGCGACTACCGCAGTGCATACACGTA
TGCTGACGGAACATGGGACTTCTACGCGTTCTCTAGGCACCTACATCACC
AGAACTGGGTCCACGAAGTCGATGAAGGTGACCAGTCGGTGAGAAAGTAC
TAGGCTTCTACAAGTGTCTCCCTTTCAGCAACCTCAGTAAAAAGTTCTAA
GAGCAACATGACTACGACAGGGATACATAGATCGAGCGTAGCATTCAAAG
ACGACACCTCGACCTTTTCGAGTAGGCCTTTAGGCAACGATGACTCTTAC
CTACCCCAACCTGTCGAAGAAATGCTGCTTGCCATCGTCACGATCCTCAT
CGATTTTTGGAGAAGGTGCACGTCAGCTTCCCATGAGCCTGTCGCTCGAT
AAGCGATCACACCCCGCTGTCACTATGTGCCACGTACCGTACGGTCTATC
AGTGGACCACACCCCGGATGGACGTGTATGTTGTCGGTGACAAGACAAAT
AATTCCGTTTTATCCGTTTAGTATCAACACACGGCGCTGTTTTAATTTGT
TGGTACAGGCTGTTCGTGCGAAAAAGTACAGCCCAGCTTTGCTCCTCTGA
GAATTTTTCGCCGATCAGGTCTGTCCCAAAAGGGTGTTTTGGTCACGAAA
AACCGCCTGCCTCTACATGATAGATTCAAGTATTTCACACCACATACATA
CGTGCACATAGGAAAGGTCGGGGCAAAAATCGTCGAGTGAAAGGGAGGAC
TCAATTATTTCGTCATCGGACACCAGTAGCTCGTCGTCCGATAGTAGCGA
TCAGGGGTCGTCGACGTCGGTGGTGTCTTCTGCCGGATCGTCGGCTTCGG
CACATGGTTCGACAGCTTCAGAAACGTTTGTCGCTATGAAAAGAGACGGC
TTCGAGAAGGCCATGGAGGTGAGGGATACCATCCATGGAAGCTTGAGGAT
GCGAATGCAGATAGTCGTGGCAACATCATTTGAGGGCAGCCACAGCACGT
GCAAAACAAATACGGAGTATATGTATTTTAATCCGGGGACGTACTGTGCC
TTAGAAAGCGCATGAAACGTCGTCGAAAGGGAACAAGCGAACCGCATGCG
CAGCGGCGTTTCCTCCCCAAAACTATGCCATGTCCTTGTTGATGGGAGGT
GCCACGGAATGCACTCAGGAAGGACCCGATACATCGAAACCTGGCGGATT
TGTCCTCTCGATGTATTCCTTTCCCTCCCGCTTCTTTTCGAGGAGCCATG
GTCGGTGGTCCACACTCAATCGTGATCGGTACTCGCTATTCACCCAGGAG
CTGGCGTGCGCAGTGCGGCCGGCCTGCGAGTCGTGCGAGTGCGAGGGTTG
TAGGAAATTGCGGGGTTTGGAGGTCACACTCCAGAGTTTCGAGGGAAGCA
ACATGGCCAATAATGTTGAGGTGTGTTATTTGAATACCAACAGACATGGG
CTCGGAATCGCACGGCATTACTCCGCATCGCCGTTCGTACATACGATTTG
ACATAAAACATTACCGGCACCAGTCTATGCATGCACATATGGTACATTCG
TGGTGGTATTCGCGCCTTTTTCGCCGTTTTCACCTGGCGTTCTGTCAAAA
GTCTTGTCAGTACCGTGATGGACAGACTGCTAGTGGTGGCACACTTCGGC
ATGTTACATACCTTGCTGCACGCAGCATGCTGTAAATTTGTAATGTTTTT
GGTTTTTCCATGCCCCGACCTATGCGCAAGACGTTGTCACTGTGTTGTTG
TTCGTGTTTGTTCAGCGCATCAGTATTTCTGTGGAAGCAAATGTTCAGCA
CATTTCGTGGGCGACCATCCAGCTGTATTCTGAAGTCTTGGCGCCAAACG
CTGAGAGGCTCTCTGCCGTCAAGGTATCTAAAAAAGAACCAATAGCCCCC
TGATTGGCTATAGTAGTACCCTTTGCAAGGACAAACACAACTAAATCAAC
CTTTCGGCGCAATGCATCGAAAAAATTCCGTTGGTTACACCATATACATA
TCAACACGAGCAAGCAACCACAAAAATAATCAAAACGGTCATCGGTTCGA
AACTTCCCCACTACCTTTACGTGTTGAGGCAGGCGCATCCCCACGATGCC
GCACAACCCTTGCTGTCGTCAATGCCATCAACGGCACGCACTTGACCCGA
CCAAAAATGACGACGGATGATCACGAACCGTCAATGCTACGCCGGCACCA
TTGCGTGACTATGCAACTCAGGCTAGCGGTTCACAAGACGTCTTCGGTGC
CGCATGGTTCAGCTCCACTTCACGGAAGGCTCTTTGCCGAAACGAACAGG
TTTGCTTTATGTTAGGGCCTTTATTTAATGTAGGTGCATACCTACGGAAA
CACGTCATTTCTTGGGTTTGGCTCTGCCGCCCTCGTTTTTGCCTTGTTTG
CTTTGGGTCATGAGCGCGGGCCCTGGGCTATTTCGCCTATATCTTAGATG
TTGTACCAAGAGCCCTCTGAGTCCTCTCTGCCCTCGTAGTGAAAACCTTC
CCTTTGACTCTCGAGGTAAAACGTAGACGTCGTTCTCACCGTATATGTAA
ATTCGGGGAAGCTCAATGGCCGTCTCGTTCTCGTCTTCTGCTGTGCCTCA
CATTTGGGTTGGTTTTATACTTCGTCTGCTCGACGTTTGACAGAACCACA
CCCCGTAAAACCTTTTCGCATGCCATCGCCTGCCTCGCGAATGTCGGCGT
GTCTGCAGATGCTGCGGGAGATATTCCTGGCGCTTGTTGGAAGGCAGGGG
GACAGAGATGCCCTGACGTATCCCACCTCTACGCGAGGGGGAGCTCAAAA
CCAACCAGACGATGACGGCACCTTCTTAACTCTGAAGAGGATAAGAGCAG
ACTGCATGTGGGTCATCTCACTACTCTCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig856:66467..71745+

>mRNA_P-littoralis_Contig856.6.1 ID=mRNA_P-littoralis_Contig856.6.1|Name=mRNA_P-littoralis_Contig856.6.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1173bp|location=Sequence derived from alignment at P-littoralis_Contig856:66467..71745+ (Pylaiella littoralis U1_48)
CTCAGTGCGGAGGCTGAAAGGCAAGCGTCACAGCTGTGGGGAGACGGGAT
CATGGTTGAACTAGCATTGGCTAGCGATGTCGCAGAAATGCGTCATGCCC
AACCGCGTACTGTGTTCGATAACGCTCTTACGGAAGAAGGCTTCCTCGGA
TTCACCAAAGATTTGGATCTACTAGCATTGCCGTTTGCCACACACACTGG
CTTCATCTCTCTTTTCCGACAGTATGCCTCTGATGTGCCGAAAGGCGCTG
CCCGTCAATCGAGGGCAAAGGGCCTATTCAACTACTTGTGCAAGTCGTCT
GACGTTCAACGGCTGGGAAATGAGGACATTGCGAGACTACTGGATGCCTT
GGGGCTGCCAAGCATCTCTGAGAAGGACTCAATTGCATACACGTATGCTG
ACGGAACATGGGACTTCTACGCGTTCTCTAGGCACCTACATCACCAGAAC
TGGGTCCACGAAGTCGATGAAGGTGACCAGTCGGTGAGAAAGTCGGGGCA
AAAATCGTCGAGTGAAAGGGAGGACTCAATTATTTCGTCATCGGACACCA
GTAGCTCGTCGTCCGATAGTAGCGATCAGGGGTCGTCGACGTCGGTGGTG
TCTTCTGCCGGATCGTCGGCTTCGGCACATGGTTCGACAGCTTCAGAAAC
GTTTGTCGCTATGAAAAGAGACGGCTTCGAGAAGGCCATGGAGGAGCTGG
CGTGCGCAGTGCGGCCGGCCTGCGAGTCGTGCGAGTGCGAGGGTTGTAGG
AAATTGCGGGGTTTGGAGGTCACACTCCAGAGTTTCGAGGGAAGCAACAT
GGCCAATAATGTTGAGCGCATCAGTATTTCTGTGGAAGCAAATGTTCAGC
ACATTTCGTGGGCGACCATCCAGCTGTATTCTGAAGTCTTGGCGCCAAAC
GCTGAGAGGCTCTCTGCCGTCAAGGCTAGCGGTTCACAAGACGTCTTCGG
TGCCGCATGGTTCAGCTCCACTTCACGGAAGGCTCTTTGCCGAAACGAAC
AGATGCTGCGGGAGATATTCCTGGCGCTTGTTGGAAGGCAGGGGGACAGA
GATGCCCTGACGTATCCCACCTCTACGCGAGGGGGAGCTCAAAACCAACC
AGACGATGACGGCACCTTCTTAACTCTGAAGAGGATAAGAGCAGACTGCA
TGTGGGTCATCTCACTACTCTCG
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