mRNA_P-littoralis_Contig853.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig853.1.1
Unique NamemRNA_P-littoralis_Contig853.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig853.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig853contigP-littoralis_Contig853:913..1242 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog7425.NV18911-PA
PFAMsDUF4219,RVT_2,Retrotran_gag_2,gag_pre-integrs,rve,zf-CCHC
Model size330
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.07e-07
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3BGB6@33208|Metazoa,3D5G4@33213|Bilateria,41ZUZ@6656|Arthropoda,3SKEY@50557|Insecta
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
Cds size330
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791722.8553848-CDS-P-littoralis_Contig853:912..12421680791722.8553848-CDS-P-littoralis_Contig853:912..1242Pylaiella littoralis U1_48CDSP-littoralis_Contig853 913..1242 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig853.1.1prot_P-littoralis_Contig853.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig853 913..1242 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig853.1.1

>prot_P-littoralis_Contig853.1.1 ID=prot_P-littoralis_Contig853.1.1|Name=mRNA_P-littoralis_Contig853.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=110bp
WESDTGASAFITFNREKMFNVRELGADDEQFVVIGDKGMMKVTAIGSLFL
KFMFLREGDDTVHTVETQIDNVLVVPGIGFNLFSGWRASVEGAGVALHRD
GTHISNGKLI
back to top

mRNA from alignment at P-littoralis_Contig853:913..1242+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig853.1.1 ID=mRNA_P-littoralis_Contig853.1.1|Name=mRNA_P-littoralis_Contig853.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=330bp|location=Sequence derived from alignment at P-littoralis_Contig853:913..1242+ (Pylaiella littoralis U1_48)
TGGGAGTCTGACACGGGTGCCAGTGCTTTCATCACATTTAACAGAGAGAA
GATGTTCAACGTGCGTGAACTAGGAGCAGATGATGAGCAGTTTGTCGTGA
TCGGAGACAAGGGGATGATGAAAGTCACGGCTATCGGAAGTTTGTTCCTG
AAATTCATGTTTCTTCGCGAGGGTGATGACACAGTTCACACGGTTGAGAC
ACAGATAGACAACGTGCTTGTGGTACCAGGGATCGGATTCAATTTGTTTT
CAGGATGGAGGGCTTCTGTAGAGGGGGCAGGTGTTGCGCTTCACAGGGAT
GGTACTCACATCTCAAATGGCAAACTCATC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig853:913..1242+

>mRNA_P-littoralis_Contig853.1.1 ID=mRNA_P-littoralis_Contig853.1.1|Name=mRNA_P-littoralis_Contig853.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=330bp|location=Sequence derived from alignment at P-littoralis_Contig853:913..1242+ (Pylaiella littoralis U1_48)
TGGGAGTCTGACACGGGTGCCAGTGCTTTCATCACATTTAACAGAGAGAA
GATGTTCAACGTGCGTGAACTAGGAGCAGATGATGAGCAGTTTGTCGTGA
TCGGAGACAAGGGGATGATGAAAGTCACGGCTATCGGAAGTTTGTTCCTG
AAATTCATGTTTCTTCGCGAGGGTGATGACACAGTTCACACGGTTGAGAC
ACAGATAGACAACGTGCTTGTGGTACCAGGGATCGGATTCAATTTGTTTT
CAGGATGGAGGGCTTCTGTAGAGGGGGCAGGTGTTGCGCTTCACAGGGAT
GGTACTCACATCTCAAATGGCAAACTCATC
back to top