mRNA_P-littoralis_Contig852.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig852.2.1
Unique NamemRNA_P-littoralis_Contig852.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig852.2.1 vs. uniprot
Match: A0A6H5K201_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K201_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 5.220e-16
Identity = 40/64 (62.50%), Postives = 49/64 (76.56%), Query Frame = 1 
Query:    1 MSRDDVKKRCTTRQLVVLKNAAGIQRGTINSRKEDLLDYLDEYVGGFRCDSGEGAGPNVTDIGL 192
            MSR +++ RCTT+QLVVL  AA I +GT+NSRK DLLDYL+ +V GFR +   GAGPNVT  GL
Sbjct:  421 MSRAEIRDRCTTKQLVVLTKAAEIPKGTVNSRKADLLDYLETFVCGFRQEPVGGAGPNVTGTGL 484
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BLAST of mRNA_P-littoralis_Contig852.2.1 vs. uniprot
Match: A0A6H5K5B1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5B1_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 1.740e-15
Identity = 39/65 (60.00%), Postives = 49/65 (75.38%), Query Frame = 1 
Query:    1 MSRDDVKKRCTTRQLVVLKNAAGIQRGTINSRKEDLLDYLDEYVGGFRCDSGEGAGPNVTDIGLA 195
            MSR D+  RCT RQL++L   AGI++GT+NSR++DLLDYL  YVGGF  +S EGAGP+ T  G A
Sbjct:  250 MSRVDISDRCTVRQLLLLVKDAGIKKGTMNSRQDDLLDYLAAYVGGFGQESVEGAGPSATGSGPA 314
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig852.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K201_9PHAE5.220e-1662.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5B1_9PHAE1.740e-1560.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig852contigP-littoralis_Contig852:1897..2094 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size198
Hectar predicted targeting categoryother localisation
Exons1
Cds size198
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791722.2612095-CDS-P-littoralis_Contig852:1896..20941680791722.2612095-CDS-P-littoralis_Contig852:1896..2094Pylaiella littoralis U1_48CDSP-littoralis_Contig852 1897..2094 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig852.2.1prot_P-littoralis_Contig852.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig852 1897..2094 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig852.2.1

>prot_P-littoralis_Contig852.2.1 ID=prot_P-littoralis_Contig852.2.1|Name=mRNA_P-littoralis_Contig852.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=66bp
MSRDDVKKRCTTRQLVVLKNAAGIQRGTINSRKEDLLDYLDEYVGGFRCD
SGEGAGPNVTDIGLAG
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mRNA from alignment at P-littoralis_Contig852:1897..2094-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig852.2.1 ID=mRNA_P-littoralis_Contig852.2.1|Name=mRNA_P-littoralis_Contig852.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=198bp|location=Sequence derived from alignment at P-littoralis_Contig852:1897..2094- (Pylaiella littoralis U1_48)
ATGTCCAGGGACGACGTTAAGAAAAGATGCACCACAAGACAACTTGTCGT
GCTCAAAAATGCCGCGGGGATTCAGAGGGGCACTATCAACTCGAGGAAGG
AGGATCTACTCGATTACCTCGACGAGTATGTGGGCGGGTTCAGATGTGAC
TCGGGCGAAGGGGCAGGCCCCAACGTGACCGACATCGGGCTAGCAGGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig852:1897..2094-

>mRNA_P-littoralis_Contig852.2.1 ID=mRNA_P-littoralis_Contig852.2.1|Name=mRNA_P-littoralis_Contig852.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=198bp|location=Sequence derived from alignment at P-littoralis_Contig852:1897..2094- (Pylaiella littoralis U1_48)
ATGTCCAGGGACGACGTTAAGAAAAGATGCACCACAAGACAACTTGTCGT
GCTCAAAAATGCCGCGGGGATTCAGAGGGGCACTATCAACTCGAGGAAGG
AGGATCTACTCGATTACCTCGACGAGTATGTGGGCGGGTTCAGATGTGAC
TCGGGCGAAGGGGCAGGCCCCAACGTGACCGACATCGGGCTAGCAGGG
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